Array 1 692337-691268 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NYCC01000001.1 Listeria monocytogenes strain CFSAN044804 CFSAN044804_contig_0000001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    692336	    29	 100.0	    37	.............................	CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC	
    692270	    29	 100.0	    36	.............................	ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 	
    692205	    29	 100.0	    35	.............................	ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG  	
    692141	    29	 100.0	    37	.............................	TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG	
    692075	    29	 100.0	    36	.............................	TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC 	ATC [692066]
    692007	    29	 100.0	    36	.............................	CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 	
    691942	    29	 100.0	    36	.............................	GTCCACATCGACAATAAAAAACACATTGTATCACTT 	
    691877	    29	 100.0	    36	.............................	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 	
    691812	    29	 100.0	    34	.............................	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG   	
    691749	    29	 100.0	    34	.............................	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC   	
    691686	    29	 100.0	    37	.............................	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC	
    691620	    29	 100.0	    34	.............................	AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA   	
    691557	    29	 100.0	    36	.............................	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 	
    691492	    29	 100.0	    37	.............................	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG	
    691426	    29	 100.0	    36	.............................	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 	
    691361	    29	 100.0	    35	.............................	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT  	
    691297	    29	  93.1	     0	.......................C....C	|                                    	A [691272]
==========	======	======	======	=============================	=====================================	==================
        17	    29	  99.6	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                     	       

# Left flank :   CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG
# Right flank :  GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [3-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//