Array 1 63732-62863 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISY01000073.1 Hafnia paralvei strain PCM_1188 1112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63731 28 100.0 33 ............................ TTTGCTAAAGAAATACCGATTCCTGCGTTAACT 63670 28 100.0 32 ............................ GCGTTAAAGTGATTGCGCACATCTTCGAGCAC 63610 28 100.0 32 ............................ AGCAGCGAAAGCCGTTATGTGTCTTCTACCAG 63550 28 100.0 32 ............................ GATTTCAGCTTACTGCACGGCGACTGGCGAAA 63490 28 100.0 32 ............................ TTGCTGGGATTCTCTGCAATCTCCTTAAATCC 63430 28 100.0 32 ............................ AAACAATGATTTCTCAGCTCATCGTAGAAACT 63370 28 100.0 32 ............................ AGAACAAAATAAATTCCGAGATCTGTCACAAC 63310 28 100.0 32 ............................ TAACCATTCCATCTGGCATTGGGGTTGGAGCT 63250 28 100.0 32 ............................ GAGAAGCTAAACATTAGCCGCTGCACAGTAAG 63190 28 100.0 32 ............................ CGGGATTGCTTAAGCTGCTAAAAGAACGATAC 63130 28 100.0 32 ............................ TCCATCGCCCGCTGAGCCATCCACTTGTGTGG 63070 28 100.0 32 ............................ ATACCCGACTGTCAACACTCCCAACAATGATC 63010 28 100.0 32 ............................ TATCAAAATTAACGCCTGCATTACCGCAATTA 62950 28 100.0 32 ............................ AACTTGTAAGGCTCGCTTACAGGTTGTGCTGT 62890 28 75.0 0 ............G.......TA.C.TTT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATTCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAACGCACTTCACTGCCCTTTATTTCGTTGAAAAGCCTATCCACTGGACAAATGTTTCCGCTGTTTATCCGCCAAGGGAAAGCGCAGTCTCATCCTCAGACGGGAACCTTCAGTAGCTACGGCTTAAGCTCAACCGCCACTGTGCCGTGGTTTTAGTTTTGTTGGTTTTCAGCGCCCGCCTGAAACTAGACGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTTAATCATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACGGGCTATTATTTTGATTTATAAAACCTTTCTCCAGTTATTCTACA # Right flank : AGGCTACGAACTCACGGCCGTTCTTTTGCCGATTTAGCCTATCTCAGTCAGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGTTGGATTTGCAAAAACTTCAGCGCAGTTTCCGTGCTCAATCACTTTTCCGTTTCGCATCACCATCACCTGATGGCACAGTGACCGCACTACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGTTGGTGGCGTTGCTGAAGCGTTTTCAGCAGCGTTAAAATCTGCGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAATGCGCGGGCAATCGCAATACGCTGACGCTGACCGCCGGAAAACTCGGTGGGATAGCGATAACGAGTTTCTGGATCGAGCCCAACTTCGTTCATGGCACTGATTACCCGCTCTTCCCGTTGCTGTTCGCTCAGCTTTTGGTGTACCTGCAAGCCCTCGGCGATGATTTGCAAAACGTTCAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 73656-73267 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISY01000073.1 Hafnia paralvei strain PCM_1188 1112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73655 28 100.0 32 ............................ ACGTCAAAAACTATCAAACGCTGGGTACAAGA 73595 28 100.0 32 ............................ TGAGCGAGCGCGCCGAGTTGTTGCAGGGTGGC 73535 28 100.0 33 ............................ CTCTCTTGATTCGTCAATAGCCGCTTGAGTTAA 73474 28 100.0 32 ............................ TTGGAACCGTGTCAATAACTGCATTTTGAACA 73414 28 96.4 32 ...C........................ ATTGGCCGCCGGACGACGTGACTGTCCAAAGT 73354 28 96.4 32 ...C........................ GCCTTTTGTGGTTCGTTTAATGCAATTGGTAT 73294 28 92.9 0 ...C.......C................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGTGCAGTGGTAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCTTATGCATTTTCGCCGCAATGATGTTGTTCCTGTACGCTTCTAGACCTTCCAAGAGTAGCCGCGTAGAACCTGTCTGAGCTTGACCGCTCGTCTCCCCGTCGCTGAAAGAGGCGGGGAGGCCGACGACTGGGCGTTCGGAGATATCTGCGGCAACCGTGTGTTGACCATATCACACAGCTTTAGCATCAGATACGCAGATGCTTTCAGCCACGCACTCACCTGATCCAAACTCTTCTACGGGATTTGAACCCCATTCTCCAGTGATTCACTTAGAAATGAAAATCCGTGGCGCAAAACCCTTTTTTCTCACCCACACGTAACGTATTGATTTTATGTGTGGTGCCGAGCCAGAAATAAAAAAGGTCTTTTAACCAAAAATGAGCTACCGCTCTGATTAGTCAAACCTTTTTGCTATTATTCTACA # Right flank : ATATAATCGTGCTAACTATTTTCAGTTTTTGGCATGGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGACAAAACATTAAAGTTATTTAGCATTCGTTGTGCTTTTTATTTTCCATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACGAAAATGGTTGTGGTAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGCGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //