Array 1 700652-699872 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBB01000008.1 Leptospira ryugenii strain YH101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================== ================== 700651 36 100.0 26 .................................... CTAAAGACAAACAACGTATCCGAACA 700589 36 100.0 26 .................................... CTAGGCGCTCTTTCGAATTCGTATGT 700527 36 100.0 26 .................................... GTCCAGTGTCTGTCGTAAAGTAAAAG 700465 36 100.0 27 .................................... CCGAAAATGCGTCCAGACCAGTATTTT 700402 36 100.0 25 .................................... ACTGAATAGAAAGAAAGCCATTAGA 700341 36 100.0 26 .................................... CACGTGTTTTTGGATGAGGGCAATGC 700279 36 97.2 26 ......A............................. TCCATGCGTTCCAACTTTTCCATGAC 700217 36 97.2 25 ......A............................. TTTTAATGTGCCCTTACCGTTCAAA 700156 36 97.2 27 ......A............................. GTTCCAAGCCTTGCGTAATTGACCAGG 700093 36 100.0 25 .................................... ATTGCACTGATATTTATTTATATAA 700032 36 100.0 27 .................................... TTGGTCAGATATGGGGGTGATTATACT 699969 36 100.0 27 .................................... GTAAACTTTTGGTCTTCCTGTGACTTG 699906 35 88.9 0 .............................G.G-..A | ========== ====== ====== ====== ==================================== =========================== ================== 13 36 98.5 26 CTCTAAGAGAAGGTATAAATTTCTACTGTTGTAGAT # Left flank : AAAATTAGCAACAAAGACTGGCTAAATTTTGTATGGCAAAGGCCAAGCTTGAAAGCATAATCCATTGAGATCATATGGAATCCTACATCCCGATTTCGTTCCTTCATGCGAAATAAACCGATCGAAGAGTTTCCTATATTTGATGTTGAAGCAAAGGAGTAAGCTATGTTATTAATCTCGTACGATATAAGTGACACTAAACTTCGGACTAAATTTGCTAAATATTTGAAAAAGTATGGTGAGAGGCAACAATACTCGCTTTTCTCAGGATGATAGCATTATGATTTTTCAGATGAGCAAACAATGCAAGATCACAAGGTATGGATATGCAAAAAACCAAGAATCAGACCTTCTCATTGTCTGAAATGCAAACCTCCGTCTTTATGAACAAAATCTACCGAATCGAAGGTTTGTTGCCTATATTCTGTTTATTTTTTAGGCAAAAACCGGTTAAACTCCTTGCAAATTTACAAAAATACTGCCTCATCCTAGAAATACCT # Right flank : GTTCTGATTGGTATCTATCGAACAGGTCATCCGGATTTTCGCCATCTCCGACTAAAAGGCTTGTAATCCATTCACCAAAGATGCAAAGTTCTACTCATTAGATGTTACCTAAGTCCCAAGAAGCACTCCTCTCCCTCTTCCACTCAAAAGGAAGGCTTATTTCCTTACGGAAAAAAGAACTATTCGCAAAACAAGGACTAGCTTTGGATTCAATCGGATACATAGTGTCCGGTTGCTTTAAACTTGTATACAAACGTGGGAAAAAAGAATGGATCAAATCCTTTGTCTTTCCAGGAGGTCTTTTGGGAAGTATCCCAAGTATCTTACAAAAAAAACCGTCTACTTATTTGATCCAAGCCATGGAAAGGAGTGAAGTGATTGTGCTTCCCTCACGACTCTTGTTCGAAACCTTATCCCAATCCAATTCCTACCTTTCTATTTTGAATGATTTTCTCTCCGAATTGTATTTAAAAAAAGAAGAGAGAGTTGCCGATTTTCTC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAAGAGAAGGTATAAATTTCTACTGTTGTAGAT # Alternate repeat : CTCTAAAAGAAGGTATAAATTTCTACTGTTGTAGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 101691-104522 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFBB01000007.1 Leptospira ryugenii strain YH101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101691 29 100.0 31 ............................. AACTCATCGCCTTTCTTGATATCGAACAAAG 101751 29 100.0 32 ............................. TGACCGTTTTGCTTTTTTCTCTTTTTCCTCTT 101812 29 100.0 32 ............................. AAGCTGAAACAGCTTATAGGGAAAATGCATAA 101873 29 100.0 32 ............................. ACTCTCCTTATGCCAGAAACCAAAAGGGAAAA 101934 29 100.0 32 ............................. ATTACGCCATCCTGGAGATTTATCCTGTCAGC 101995 29 100.0 32 ............................. GCCACCCAAAGTCGTTCCCTGTTAGGGTTACT 102056 29 100.0 31 ............................. TCAAACAGGCTTTTATTGGTTCGGTCATTTC 102116 29 100.0 32 ............................. GGACAAGGGCTTTTTTTTCGCCTTCAACGATT 102177 29 100.0 32 ............................. ACGAGTACGCTATGATTTTTACGCGCGAATTT 102238 29 100.0 32 ............................. TAGACCCGGAGCAACGAAGCCCCGTAATTTTT 102299 29 100.0 32 ............................. GATTTCATTTAGTACCCCAGGGATTCGTATTT 102360 29 100.0 32 ............................. AAAGTCTTTTCAGTTTCTCGTCTGTTGTGCCA 102421 29 100.0 32 ............................. GATTGGTCCTACCGTCGGCCCTAAAGGAGTGA 102482 29 100.0 31 ............................. AAAACGAGGTGCTTGCGGTGTCATATGATGC 102542 29 100.0 32 ............................. TAATCTCCTATATCTATCAAATACTCTGTTCT 102603 29 100.0 32 ............................. GAGGATTGAATCCGCCATTAACTATCCCTTTT 102664 29 100.0 32 ............................. TCTAACGGACTCGTTACCTTTGAACCGATCCG 102725 29 100.0 32 ............................. CAGAATACCAAATCAGAGGATATTTGAAAAGC 102786 29 100.0 32 ............................. CGGAACTACTGCCGTAGCAGATGCAAGCGTTA 102847 29 100.0 32 ............................. CTAAAAATGTATGAGGGGGTCGCACACTTTTT 102908 29 100.0 32 ............................. GTGGTTATCCTTGCAACAAGGCGGGATACTCG 102969 29 100.0 32 ............................. TCACAAGACACGGACATATCACTCCTTTAGGG 103030 29 100.0 32 ............................. GATAAAGGGTTTTGGCAAAGGTCATTAAATTC 103091 29 100.0 32 ............................. AAATTTGTTCTTCATTTAAACGGTGGTATTTT 103152 29 96.6 32 ............................A ATAAATAACAAATCGGAGGGTGAGCCGATACT 103213 29 96.6 31 ............................C CACGGCTGGATTGTAAAGAACCACAAATTTA 103273 29 100.0 32 ............................. GTATCAATGTCAATGTAGAGTTTAGGGATATG 103334 29 100.0 32 ............................. TTTCGGCGTTTATCATAGACGACTTGCGAATC 103395 29 100.0 32 ............................. TAGCCCAGTTGCCTTAGTGTAGTTGTTGTTAC 103456 29 100.0 32 ............................. CAACATTATCTCCAAGGGTAGACGGATCTCCT 103517 29 100.0 32 ............................. CGGAAGCGAAGCTTTGCTTTTGTGGTTGAAAG 103578 29 100.0 32 ............................. TTCTCGAGCACCTCTTCATCCAGGACACAACG 103639 29 96.6 32 ...........C................. CTGAGAGCTTACATCGTCATCGTCACCTTTAG 103700 29 100.0 32 ............................. AAACCGACGTTGCAAAAAGACAAGCACTCGCA 103761 29 100.0 32 ............................. GATGGCTCTATGCTGAACGAGCGTCTCGCAAT 103822 29 100.0 32 ............................. CAAGATGAGTTCCCACCCCGCTCGGCCCGATT 103883 29 100.0 32 ............................. CATGGGGCAACGCAAATTTTGGTTCCGTTTCG 103944 29 100.0 32 ............................. TGCAAGAGCCTTTTCTAGTGCCTCGCCTGTAA 104005 29 100.0 32 ............................. AAAGGTAAGTCAAAAGAATGAAAGTTCATCCA 104066 29 100.0 31 ............................. CTTTGGAAAATCATGGCTGGGCAAATGCAAG 104126 29 100.0 31 ............................. GAATTGATTGTTACGGATGAAATCACAGTAG 104186 29 100.0 32 ............................. ATAGAAAGGCACTTAAAGAAAAGTATCTCCCG 104247 29 100.0 32 ............................. TTGAATGAAGAGTGAAAGGGAAAGCAACGTCC 104308 29 100.0 32 ............................. ATCAGAGTTTGGCATAAGGATCTTAATAACAA 104369 29 100.0 32 ............................. TATATTTGTATATTGATACGGTAGGGGACATT 104430 29 100.0 32 ............................. TAAACCTAGACGGTCATTGGATGAGGATTGTA 104491 29 96.6 0 ............................T | CCC [104496] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.7 32 CTATTCCCCACGCATGTGGGGTTGAACCG # Left flank : TCGATACCTCTCGCGTTTGATGTTGTTAAGGAAAGCAATTTCGATGTTGAACGACGTGTCCGATTTCAATGTAGAGATTATTTCAAAGCCGCAAAACTGATGAAACGTATTATTCCCGATATAAAGGAGTTGCTCTATGGTGGTGATATTAATGCAGAAAGCGAAGATTTCCCAGAGGGGAGAGATGTCGCGATTAGCTATTGAAATCAAGGCGGGTGTCTTTGTTGCAACGATAAACGCGCGGGTTCGAGATGAACTCTGGAAACGAATGACGGAGGAGTGGCGAAATCCATGTATCATGATCTTCAGCATGAATAACGAACAAGGTTTTGAGATTCGAACATTTGGTGATCCAGAACGTGAGGTTTTAGACTTTGATGGCTTATTTCTCTTGGCTCGACCTTCAGAAAACCGAACCTCGGATGATTTGTCAGAGGTTGATGATACAAAAATAGATTGAAAGGCCTGTCAAGTGATAGTTTACTATACATGTATTTAGC # Right flank : TAACGCGAAGAAGGCTTGCCTGACGTATTGCACCTCTGTTCATTTATAACAACTCTTAGGTTATGGCTGGAGCCACTCTCTTCTTATCGTTGAGCGAAGTGAAAAAAATTTGCCCTCTACTTTAATAGAATCCTTAAAACCATGTATTTATTTCTGGTCAAGGCACCGGCATGTTTGCTTCATTTTCTAAATTGCTACCAATTTTCAAATCAATACCACTTATGCACATTAGGTGATGCGGGGACGATCTTTGATTTTAGCAAGAACTCGTGAGATATCTGGCATAGTTATTTTCCTTGACTTTTTTTCTGGGAAAACGATAATCTCAGTGGAGTCTTCTAGGTGTTCCCACCAGGGGCATTTGGAGCCCGGCGGTTAGGAATGCCTCTATGGCTACCCTAAGTGCTGGCACGGGGATTAATGAGGCCAGTAATCGAGGTTCATCTTCTCTGAAGAGAGGTACCTTGGTAGCTTTAAAGATTTGTCGAGGGCACACGGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACGCATGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //