Array 1 94638-92779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZMC010000009.1 Escherichia coli strain UoL_90 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94637 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 94576 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 94515 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 94454 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 94393 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 94332 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 94271 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 94210 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 94149 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 94088 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 94027 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 93966 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 93905 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 93844 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 93783 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 93722 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 93661 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 93600 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 93539 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 93478 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 93417 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 93356 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 93295 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 93234 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 93173 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 93112 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 93051 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 92990 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 92929 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 92868 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 92807 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 996-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZMC010000028.1 Escherichia coli strain UoL_90 28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 995 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 934 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 873 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 812 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 751 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 690 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 629 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 568 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 507 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 446 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 385 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 324 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 263 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 202 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 141 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 80 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //