Array 1 202471-203048 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJMV01000001.1 Klebsiella pneumoniae strain EuSCAPE_HR081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 202471 28 100.0 33 ............................ TGGCCGCATTTTTGGTCCTGATGATGAATTGTC 202532 28 100.0 33 ............................ TATAGTGCTCTTTATAGATATAACCAGTGCCAA 202593 28 100.0 33 ............................ CCATTCGCGATAACGATGGCCATCTGACCCGCG 202654 28 100.0 33 ............................ CCATTGCGCACAGACTATTCCGAAAACAAAGCT 202715 28 96.4 34 ..................A......... CAGGAAAAGATCATCTATCGTTTACCTCGCATTG 202777 28 100.0 33 ............................ CCGGGCGTTTCGACTGAACTCACCTCCCCCTTA 202838 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 202899 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 202960 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 203021 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 10 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGCGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCAGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211802-214090 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJMV01000001.1 Klebsiella pneumoniae strain EuSCAPE_HR081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 211802 28 100.0 33 ............................ CATTTTTGACGGTGTTAACGTTCAGTCAGAATC 211863 28 100.0 33 ............................ CGTATTACCCTTTGAAAAAGCCTCATGACAAGA 211924 28 100.0 33 ............................ CAGTACGAAGCCGCGCTGGCTGCGAAGGATGAC 211985 28 100.0 33 ............................ CAGCGGTCTGATTGGCACCAATACTGCTGAATG 212046 28 100.0 33 ............................ CATCTGATTAGCTGCCAGGCCCTCATATATGGC 212107 28 100.0 34 ............................ TCAGAGATAGCCCGCCTTCGCGCGAGAAGGAATG 212169 28 100.0 33 ............................ TACCAGAAAATCGCCCGCTTTAACGCTCAGATA 212230 28 100.0 33 ............................ TGGTTTGCGCGGCGCCTGAAAAAGATAAAACCG 212291 28 100.0 33 ............................ TGGTGGATCGCCCGATCAAGATGGCGATGAACG 212352 28 100.0 33 ............................ CAACGGAGAAGAATTTTTCGTTGTTCTCGGCGA 212413 28 100.0 33 ............................ CAACGGAGAAGAATTTTTCGTTGTTCTCGGCGA 212474 28 100.0 33 ............................ CCCTGCCGGCGGACAGCAGCGGCAATACCACTG 212535 28 100.0 33 ............................ CTTGGCGTAGGGGGATCAATTCCTGCCATAAAT 212596 28 100.0 34 ............................ CGTCTCCGAGATGCATTTGAGCGGGAGTGGAAGG 212658 28 100.0 33 ............................ CATGGTGCCGCCGATGTCGTACCGCTTTATGTA 212719 28 100.0 33 ............................ CCTCGATCGCGTCCCGCTGTTCGTACTCGCGCT 212780 28 100.0 34 ............................ TTACTCTGACGGCTACTACGAAAAAGATGGCGTG 212842 28 100.0 33 ............................ CGTCTCGGCGTCGTACCTGGCAAAGGACGGCAT 212903 28 100.0 33 ............................ TTTGATGGGGTGGTGACAGGTGTCACCTGGCTT 212964 28 100.0 33 ............................ TAGTTGATAATTCAATAGCGTATTATATAGGCC 213025 28 100.0 33 ............................ CTGGAGAAACGAGTTAATAAACGCCCGTTACCG 213086 28 100.0 33 ............................ ATGGCCAATGGCCGCTGTCGTATGCACGGTGGC 213147 28 100.0 33 ............................ CAAAGCGCTGTTCGATGCCCTGACTCTAACAGG 213208 28 100.0 33 ............................ CTGGTGGCGGGATGCCAGCGCTGTGCTGACTGT 213269 28 100.0 33 ............................ CAGAGCAGCGTCGAGCTGGATGATGCACACCTC 213330 28 100.0 33 ............................ CACCGGAATCTGGCTGCAATAGCAGTTGTACCG 213391 28 100.0 34 ............................ CGCCGATGGTGCTGGTACCAGTATCTATCAGCAG 213453 28 100.0 33 ............................ TGCAGCCATTTCAATAGAATCCTGCCTGATTTG 213514 28 100.0 33 ............................ TTTTCATATCTGTCACGCTGAAAGATAGTTGCA 213575 28 100.0 33 ............................ TGAAATAAATCCGGTCTAGGGGGTTGCACTCGT 213636 28 100.0 34 ............................ TTCACGGTCCCGGGGATAGCCGCGAAGATGTAAG 213698 28 100.0 33 ............................ TGGTTAAGACTTTGAGACGATCCCGCCCCTCCG 213759 28 100.0 33 ............................ TCAGCGCATCATAGCCGTTATCCTGGCAAAAAA 213820 28 100.0 33 ............................ TATGTCCGTAAATAACGCCAGAATCGGTATCTT 213881 28 100.0 33 ............................ CGAGATATACAGCGCGGAGGTATTAGACTCACC 213942 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 214003 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 214064 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ================================== ================== 38 28 99.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCATATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTTCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //