Array 1 124573-123105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJOAG010000010.1 Vibrio parahaemolyticus 10290 isolate VP161972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 124572 28 100.0 32 ............................ AAGACATGGGCTGTCAGTGCCAGATTGAAACC 124512 28 100.0 32 ............................ AAGTTACCTTGCGGAGTAGACGTGTCGAGAGT 124452 28 100.0 32 ............................ GTTAAGGCAGGATTAAACCACTCCAAGTTAGA 124392 28 100.0 32 ............................ TCAAGATTGCGCTTTAAGCGCATATGATAAAA 124332 28 100.0 32 ............................ TCTCAGATACAGATGAATAAGATGAATATTGT 124272 28 100.0 32 ............................ ATCCTTAACACCCTTAACAGCATCTTCAATTG 124212 28 100.0 32 ............................ TTGGCATAGAAAAACGCATTCTGCTGGTGCGT 124152 28 100.0 32 ............................ AGGTCATGGCACTTCGAGAGGCCAATCGAGCA 124092 28 100.0 32 ............................ AGTTGGCCAACAAAGCTGAGGCGGATACATTG 124032 28 100.0 32 ............................ AAACTAGCAACCAACTTAGGATCATCCCAGTA 123972 28 100.0 32 ............................ TCAGCTTTGTTGGCCAACTGGTTTTTAGCTTT 123912 28 100.0 32 ............................ GTCGTGAGATAGATTCCTTTAAAGGTCATTGG 123852 28 100.0 32 ............................ GATTGAGTATATGCAGCGTGTTATGGATTATT 123792 28 100.0 32 ............................ GACAAGACGAGCAATACGACGAACATAATTAC 123732 28 100.0 32 ............................ TGATCTAGTTGCTAACTTGCCACCCGTTAATA 123672 28 100.0 32 ............................ AGGAAGAAAATACCAAGTCCAAGATAGATCAT 123612 28 100.0 32 ............................ AATATCAAAAATAACGTGGTTAAAACGCGAAG 123552 28 100.0 32 ............................ ACTTGGAGGAGCGCAATTTTGAGTGAACGTGT 123492 28 100.0 32 ............................ TATAGCCGTTCGTTATGCTGGCGATAATTTTA 123432 28 100.0 32 ............................ TTCCACGGGCTTTAATACTAGTGCATGTCCAG 123372 28 100.0 32 ............................ TCGATTCAGATTATCAGAATTGGGAGCCGCAT 123312 28 100.0 32 ............................ ACATCAAGGCAAGCAAGCCAAGTCAAAGAATC 123252 28 100.0 32 ............................ AGCTCACACTAGAAAGAGACGGATGGCGTACG 123192 28 100.0 32 ............................ AAGAACGCTTAGAACGACGTTTAGACATTTTT 123132 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.9 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : CGAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGACTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTTAAAATAGGCTTAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTAT # Right flank : GGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATATTATTCTCATAATATTCAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAATCCATAATTATTCATATTTAATTTAATTTGACAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATCGCTTGGAAAAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCATGCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //