Array 1 2379503-2379836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2379503 29 96.6 32 .........A................... CTCCCGGGTCCGGGGCGAGGCCGGTGGCATGG 2379564 29 100.0 32 ............................. TCGTCGGTGGGGGTGTCGGTGATCCGGGCGAG 2379625 29 100.0 32 ............................. TGGTTCAGCGTCATGTTGACGCTGGTCTCCTG 2379686 29 100.0 32 ............................. CTGGCGGCGCTGGGGTCGATGAACGTCCACTC 2379747 29 100.0 32 ............................. CACGAGATCGAGGACTCGCTGCCCGGCATCTA 2379808 29 82.8 0 ...........CC.AA........C.... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGGTCCCCGCGTACGCGGGGGTGTTCCG # Left flank : GGATCGAGGAAGAGTTGGGCGACTCGGCGCGCTATGCGGGCGGCTCGGCGTTGCGTCGCCGTACGTGAACAGCGGGCAGGAGCGGCCGAGGCAGAGGCACGCGAGCCCTCAGTTCGCCGACTATCGGGTGCGAACCGGCACCCGGGCGGGCGCCAGTCCCGGAAGTCTCGTCTCGGGGCGTGGCGGCGAGATCGGGCGCTTCGGCGGGGGCGGGGTCTTCGGCGGGCGGTCCGGGATGTGATCCAACACGGAGGCTCCCAGGGTCGGTACGGGGACCCATCGTATGACCGGCCGCTAGGGCGCGCGGCTGCGATCGGCCGTTTCTCGCCTGTGCAAGTCGGGGGTGTGCGGCGCCATGTCTTTTGGGGGCGCTGGCTGAACGACACGGTCTCTGAGAGGCGAACGGGTACCTTCCTGCTCTGTCACCATGGAGGGGTGAGCGTGGTGCAGCCTTGAGACAAGAGATGGCAAAGCCCCTATAAACCCGCAGGTCAGGGAGA # Right flank : GCCCCCAGAGGTCTGCCCGCCCCCCTCGGGTGGGCAGACCCAGGACGCCCTCGGCAAAGGGCGGGTCAGAGGGACGGGGTCAGGCTCTTCGCCGTGCGGCAGTGGCTCGTCCTCGTGTGGCGCCACAGTTGGACGACCGTCAGGCCGAACAAGGCGGTGAACGCGACGAGCAGGGCCGTCACGATCTCCGTCTGCCGGGCGCCCGCGTCGCGGTCCAGTTGGAGGAGCAGGCACAGCAGGGAGAGCACCATCCCGCCGAGGTAGACCGATCGGACGCGCCGCAGCTGCCGTACAGCGCGAGGGGCGAGGGCTACACGCTTCATGAGGGCCATGTGCGGCGGATACCCCGGGCGCGGCCCGCCAGTCACCGTCCTTGCCCTGTTCACCCGCCGCCGACGGGGTTCGGCCCCTCGTGGACCGCGCGGCCGATGGGAGCGGTCGGCTCAGTCCTCGACCGGCCACTCCAACGGTTCGCTGTGGAAGCCCTGTTCGAGCTCGAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3190347-3189644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3190346 30 96.7 31 .............................C TCACGCAAGGACTTGACCCATGGGAAATGAA 3190285 30 96.7 31 .............................C TTGACCGGCGCCGACCACAGCAACGTCCTCT 3190224 30 100.0 31 .............................. GTTGGCAAGACACCACGTACGACGGATCAAG 3190163 30 100.0 31 .............................. GCATCGTCACCGCGAGCAGGACGGACGGGGT 3190102 30 100.0 31 .............................. GTTGGTGCCCTCCTCGCCCTCTTCATGGCAA 3190041 30 96.7 31 .............................T CATCTGGGGTCCGGGCTTCACCAAGAACCAT 3189980 30 96.7 30 .....................A........ GAGGATTGCGAAGTTTTCCACGCACGCCCG T [3189953] 3189919 30 90.0 31 ..G.............T............T GGATGCCGCTGCTGGTCGGGACACCGGCCCA 3189858 29 86.7 32 ..G...........T..........-...T GGCACCCGGAAGTGCCGGACGGGCAAGAACGC 3189797 30 76.7 31 .GG........ATC.......A...C.... GGCATCACGCATGCGAAAAGCTGGGACGATG T [3189782] 3189735 30 83.3 31 ..G.............A....AC......C CGACCCGGGCGGTGTACAGGTCACCCTCGGG 3189674 30 96.7 0 ..G........................... | T [3189647] ========== ====== ====== ====== ============================== ================================ ================== 12 30 93.4 31 GTCGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TCATCGAATGCACCACCTGCGGCCGCCCAGGCCAACCAGAGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCACCACCCACACCAACGAAACCCAGCCCCCACCCGCCGAGGTCGCCGACATCAAGGCACATATGGCCAACCTCCGAGACCTCCTCAAACCCGTCTGAAACCAACAACGGTGGCTCGACCCACACTTCAGCCAGCCTGACAACGCCTCCTGCGCGGCCCTGACCGAGACCCTGGACACCGAGCTCGCGACAGCGAACAGAAAGCCCGCGAACGCTCCCGGCCTCCGCTGCGCAGTGACTAACCTGCGGAGAGGACGAAGCCTCGCCCGCAAGGAACGAAATGCCTGCCGCAACCAGCGGAAGGCAGCACCACTCCTGACAGACACAGGTCCCGGCCCAGCCCGCCCGCCCCATAGGGGAGAGATGTCCGTTTCTCAAGAAGTAAGCAAAAACGAGCCCCTGACCGCATAAACCCGCAGGTCACGAACT # Right flank : GCGTACGGCCCCGTGAGCATGCTGGAGGCGGGACCCGGTGGGGGCTCACCGGCCCCGTTCCGTCGGCTTGGGGCCGGATGCGCGGAAAGAGATGGATTGCCGGGCCCGTGCATCAGCGGAACCGTAGGTAGCACTTCAAGGAGTCGAACGTGACAGGCCAGACCAACGGAGCGGCGCAGGTCGGGAATGCGCTGGATCTGCCCGACGGGCCTCAGCCTGCCTTTCGGACGGACCTCGGCGCCTTGTACCAAGGCGACTGCCTCGAAGTGATGCGAAACATTCCGTCAGGTTCCGTGGATCTCGTTTTTGCGGACCCGCCGTTCAATCTTGGAAAGATTTACGGCAAACATTTCACGGATGCCGTGGCCGAGGTCGAGTACACGAACTGGTCAGAAGCGTGGATCAAGGAAGGGCTTCGCCTGCTCACCCCCGGCGGGGCATTCTTCCTCTACAACATTCCCAAGTGGAACATGCGCAACGGCGCTTATATGCAGAGCCTG # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3195550-3194363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3195549 29 100.0 32 ............................. GAACCGCTCACGGCCGCGAAGACGTTGCCGGA 3195488 29 100.0 32 ............................. GGGGCGAACTCGAATTACAGCTCGATTGCCCA 3195427 29 100.0 32 ............................. GGCCGGGCCGGGTTCGCCGGGGTCGTCACCTG 3195366 29 100.0 32 ............................. CGGTGAAGATCGACTGGATCGCAGGGCCTAGG 3195305 29 100.0 32 ............................. ACGGCGAGCCCGGTGATCAGGGCGCGGTCCAC 3195244 29 100.0 32 ............................. CGGAGCGGACCGGACCGGAAGCGACGGACCGG 3195183 29 100.0 32 ............................. CAACACCGATGACTGGAAGGCGCAGGTCCGAG 3195122 29 100.0 32 ............................. ACCGGTCCCGCGACCAGGAGCATCAGGGCGCC 3195061 29 100.0 32 ............................. GGGCGGTCCCGCGGTGCGGGCGCCCGGTGTGC 3195000 29 100.0 32 ............................. CGGCGGTGGAAGGTCTCCACCTCGTTGAGGAG 3194939 29 100.0 32 ............................. TCGCCCCCCGGGTGCAACCGGGGGGATCAACC 3194878 29 100.0 32 ............................. GCCGGGCTCGCCGCAGCGCAGGGCGGAGGGTC 3194817 29 100.0 32 ............................. CCTGCTTCCGGCACCGCTGGTCGTGCTGGCCG 3194756 29 100.0 32 ............................. ATCACCGGGGACGGCGGGCCCGCCACGGCGGA 3194695 29 100.0 32 ............................. TGCGGTCCCTGCGCGAGGACGTCTCCGGCCTG 3194634 29 96.6 32 ......................C...... CGGTCCTGGCAGTAGTCCGGCCACGTCCGACC 3194573 29 100.0 32 ............................. GATCAGGCGGATTCCCACGGTTGCTCTCTTCC 3194512 29 100.0 32 ............................. ACGGTAAAGGTCAGGCTCAGCAACATTCTGGG 3194451 29 96.6 32 ......................C...... TGGGACATCAACGCCAAAAATGGCGTACCAAG 3194390 28 86.2 0 .....................C-..CG.. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACCTCCCCGGGTTTCAGCCAGTAGTCCTCACCGTACGGCTCGACAAAGAGCCAGAGGTCGCCGACGCCCGCATTCTCCACAGGCAACCTGCTGCGTCCCACTTGTCCCCCAAGACCGCTGCCTCCATGAACCTCTACACGGTATCTACCCAGCCCGCATCGGCGCCTTCAGCCGACCTTCGCCCCACCGACCCTTTGCGCGACAGCCCTTAGCGTCGACTATCCGTGACGGTCCGTCCTCCCGTCAGCTCGCCTTTTCGGTTGTTCAGGCCGGGTAGGCTCGCTGATGGCTCGGCTGTCGCGTTGAGCGGGTGGTGGTTCCCCCGGGCCAGCGGCTCTGGTGCTGTTTGCGGGCGCGGGAGCGTTGCTGCTCAGTCGGGGTGCAGGAGGGCTTCGGGACCGTGTATCTGCGGTTGCCTTCGCTAAAGAGTGGATATGTCTGTTTCTCAAGAAGTAAGTAAAAACGAGCCTCGCGCCACATAAACCCGCAGGTCACGAACT # Right flank : GAGGCGCCGACGGTCCTTGGCACGGCCGACTGCACCCAGAGCTATGCGGGCTCCTCCGGCAGCCCCGTCGCCAAGCAGCTCCGGCTCATGCGGGGCAACTGGGGCACCAGAGCCTGTCGCCGTGAACGAGAACGGACAAGCAGCGACTGACGCTCGAAGCACCGCATGGGACGCCTGCTCGCAGAGCAAGCCCCAGTGACGGAAGGCCAACGCCAAGGGACAAGAGAACATGGTTCAACTGGACTCCGACCAAGCCCCGGTCATCTGGATGATGCCTCCCGGACGGACGCACAGTGCCGATACGGAGGGGAGCAGAGGACCACCAAGCTCCCCTGGCAGCTCACCGCGGACGACCGTGAGCCGGAGGTGCTGAGATGTTCGCCGAGGGGCCGTGCGAGGACACCGTCGTCCGCTACACGTTGGCCGACTGACCTGACCTGTCTGGTCCCTCCCGCTGGCGATGCCAAGAGAAACGGTCGGCCCCACACCACAGTAAGTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4127695-4127361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4127694 29 100.0 32 ............................. GGGCCTGGCACAAGCTCACCGGCCGAGCCCTG 4127633 29 100.0 32 ............................. GTCACCTTCCCGGAGCCTTTTCCGGTCGCCCC 4127572 29 96.6 32 .........................T... CGAGGCCAGCGGATCACGATCTGGGGGGTGGG 4127511 29 100.0 32 ............................. TGAGCATGGGCAGACCTGGAGCGCCTACTTCA 4127450 28 93.1 32 ................-........T... GAGGACCCGTGGATCACCTGCGCGGCCCTGGC 4127390 29 93.1 0 ....C................A....... | T [4127365] ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGGTCCCCGCGCGTGCGGGGGTGGCCCC # Left flank : CACCAACTGCCCGGTCGGCCTGCGGGGCTTCCTCACCCGGTGGCTGCTGGAGATCTCGCCCGGCGTCTTCCTCGGCGCCCCGTCGACGCGCATCCGCGAACTCCTGTGGGCCGAGGTCCGCGAGTACGCGGGCCAGGGCCGCGCTCTGCTCGCCTACCAGACGGACAACGAACAGGGCTACGCCTTCGAAACCCACGACCACACCTGGCACCCGACCGACCACGAGGGCCTCACCCTGATCCACCGCCCGAGCCCGCACGCTCCACGGCCGCAGTCGGGGAAGGCGCCTGCGGAAGTGCCCCGGCAGGGGTGGAGCAAGGCGTCGAAGAGGCGGAGGTTCGGGGGGCGGTAGGTGGTGGGGGAGTCCCGGGCGCAGGGTGATGCCATCGGAGGTTTCAGTGGGCCAGGCAGACGTAGTGAGAGAAGTGACCGATATGCCGGAATCTATGGAAGTAAGTAAAAACAGGCTCCCGCCCGGATAACACCGCAGGTCAGCAACT # Right flank : CGAACACGGAGGACGGCGAGGACGTCGAGTAGCGGTCCCCGCGCGCGGGGGAGCGTGGACGGCGGCCGGGCGTCGGAAGTCAGGTCGGGGGAAGCGGCGTCGGGGGGACAAGCCGCTTCCCCCGGTGAGAACAGGGTCCTCGGTCAGCCGTCGCGGTCAGGGGGAAGTCGCGCGGCGGTGACCCCACAGTGAGGGCCTGTTCCGGGCCTCCGGTTCCTGCCAGGGCCGGAGGGCCTGGGTCCCATCCTGCCGGGGCGCAGAAGCCGTATCGGCGGGCAAAAGGCCCCGGTGGGGAGGTCGTAGGTCCTTAAAAGGCGCATCAGTGATCGGGAGCAGCCACTGGATACGGCCATACGTGCGGATACAATCTGCCGATCGCACGCGAGGTCCGGACGAGATCCGGGCAGGGTCCAGGCGGGGGCTACGGGGAGGCAGGGGCAGTGGCGCAAGCGAGGAAGATCGCGCTCTACATAGTGGTGGTCTTCGTGCTGTACACGATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4138695-4137689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4138694 29 100.0 32 ............................. GCGCCCTCATCGCCAGCGTGGCCGACGCCCGG 4138633 29 100.0 32 ............................. CTGGCCCGTCTCCGGAAGCTGCACCTGGAGCT 4138572 29 100.0 32 ............................. GGGTGGCCGCGGTGGCACGCGGTCTGGGCGGC 4138511 29 100.0 32 ............................. AGCCATGCGGCATCACCCCCCCACCTTCCGGA 4138450 29 96.6 32 ............................G ACGCCAGCGCGAGCAGCATTTTGCTGCCCGAG 4138389 29 100.0 32 ............................. CCGCTGGGCCCGTACTTCGGGCTACTCAGCCG 4138328 29 100.0 32 ............................. TTGCTCCGACGAGTCGGCCCCGCAGCACGAGG 4138267 29 100.0 32 ............................. CCCTGTGCAGCGCTGGCCCGGTACCCGATCAG 4138206 29 100.0 32 ............................. GATCGTCGTCATCCGTCGCTCAAGCTCACGCT 4138145 29 100.0 32 ............................. TCCTGGTTCATGTCGGCAGGCTTCTCCGGTCG 4138084 29 100.0 32 ............................. GCCAGCCGCCCGCCGAAGGACCGAGCGGAAGT 4138023 29 100.0 32 ............................. CGGTAGCGCCGGTTGCGCACCGCGCCGGGGGT 4137962 29 100.0 32 ............................. TGGACCGCCGACGAGAGCGACCGGCGCCGGGA 4137901 29 100.0 32 ............................. AACCGCATCTACGACCTGATGCACCAGGCCGG 4137840 29 100.0 33 ............................. CGTCCTTGAGTTCGGCGCCACGGATGAACTGTG 4137778 29 100.0 32 ............................. TCCGAGGGCCGCGCGAGCCACCCGCCGAGTTC 4137717 29 86.2 0 .....................A.AAA... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.0 32 GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : CACCGACTGCGGCCGCCCCGGCCGCCCCGAACACCTCCCCGACGGTCTCTGCCGACCCTGCCGCACCACCCACACCGCCGAAGCCCCGGCCCAACCCGCCGAAGTCCCCGAAGTCGCCGACATCAAGGCGCGCATGGCCAACCTCCGCGACCTCCTCAAACCTGTCTGAGGACTAGCAGCATGGGATCGCAGGGGATCGCCCAAGTGCTTTGCCCTGGGACCTGACGGCGCCTCTCGCGCAACCCTGGCAGAGACCCGGGGTGCCGGGATCGTGAGAAGCGACGGAAAGCCCGCGAACGCTCCCGGTCTCTGCTGCGCAGTGACTAATCTGCGGAGAGAGTGAGCCTCTGGCCCGCGAGGGGGGACACACCCGCCGCAGAGGCCGGAGGGGAGATGCAGCTTCCGGCTCGGCCTGACCGTTCGATGGGGGAGATATGTCCGTTTCTCAAGAAGTGAGTAAAAACGAGCCCCTGGCCGCATAAAACCGCAGGTCACGAACT # Right flank : CGGCCGCCCGAAACCGGAACTCGATCAATTTCCGTCGAGTTCGAATCACTTTTGAACAAGTGGCCCCTCTAGGGCATTTCCCCATGTCAAATGCCCTCATGCCCGCGATCGACACGGAACTCCTCACCGCGTTCCGCCACCTCTCCCCCACCGCCCGAACCCCCTGGGGCAAGCACGATCGGCCGACCGAGCAGTGGCTCCCCCTCTGGCGGCACATGGCCGACAGCGCTGCCGTCGCGGGCAGGCTCTGGGATGAATGGGTGCCCGGGAACGTCAAAGCGCTGGTCGCGGATGCTTTCCCTGAAGGGGTCGACGACGCGCGGCAGGTGGCTGTCTATCTCGCCTGCGTGCACGACATCGGGAAGGCCACCCCCGCCTTCGCCTGTCAGGTGGACGGGCTCGCGGACCGGATGCGGGCGGTCGGGCTCGACATGCCGTATCAGAAGCAGTTCGGGCTGGACCGCAGGATGGCTCCGCACGGGCTGGCCGGGCAGCTGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4141984-4141404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4141983 30 96.7 31 .............................A CGGTCATCATCGGGGACTCCCTTCAAGATGT 4141922 30 96.7 31 .............................C GGGCCGACTCCTCCTCCAGTTCGGCGATGGC 4141861 30 100.0 31 .............................. CCCAGATCCAGGCGGACGCCGGGGACACGGT 4141800 30 100.0 31 .............................. TTCCCTGAAGCGCGCCCTCTTGGGCTGGCCG 4141739 30 96.7 31 .............................C CAGGCATTGTGGACGCGGGTGTACACGTCGT 4141678 30 93.3 31 .........................T...T TGCGGACAGGATGCGTCATCGATCACCGATG 4141617 30 93.3 31 .........................T...A CCTGGGCGTTCTGGTTGGAGCCGTCTCCGAC 4141556 30 86.7 32 .............GT..........T..T. GCCGGGCGCCCGAGGGCATGACCGGCCGGGAG 4141494 30 86.7 31 .............GT..........T...T CCCGCGTCTCTGCCACGGAGAGCACCCGGTC 4141433 30 93.3 0 .........................T...C | ========== ====== ====== ====== ============================== ================================ ================== 10 30 94.3 31 GTGGTCCCCGCGCACGCGGGGGTGGCCCCG # Left flank : GGTTCGGCAACCTCACGGAACTGAGCGTCGTACACCTGGAGCAGCTGACCAGCGCCCTGTACGTGGAGGACCACGACCAGGTCAGCACCTATGCGGACGCTCACGAGTCACTTACGGCCGCAGCGCTCTCCGTTGAGAAGTCACTCGACCTGATCCAACAAGCAAGGGACCAGAAATGATCATCCCCGACTCTTCAAGCCTCCCCGTCGCCTGGTGGAAGTCCTCCGCTTCCCACGCCCAGTCCGACTGCCTGGAGTGCGGCATCGTCGACTCCGACCACATCGCCGTCCGGGACAGCAAGGCGCCGAACGGGCCGGCTCTGGTCGTCGGCCGGGGTGCGCTCGCGGCCATGGTCGGGGCGGTCGCGGCTGGGCTTCTGTAGCTCTGCGCTGACGTGCGGAGCGATGAAGACGACCTGCGAAGCAAGGGCACTTATGTCTGTTTCTCAAGAAGTCAGTAAAAACAGCCCCTCAGCCGTATAAACCCGCAGGTCACGAACT # Right flank : GGCAGTCACCCCGCTGAAGGTACCGTCCTGGCGAATTCCGCAGTACGGGTGGCGTAGTGCCAGGCCGCGTCCCGTGCCTGGCAGGCAGCGGCGACCTCCGACGGGTCCTCGTTGAGGATGACGCCGAGAGTCGTGTCGTCCTCGTCGAAGACGAACCGTACGACGAGCCGGGAGTCGAACAGCCAGAAGTCGTGATCCGGCAGGCCGATACGGGTGGCCTCGGCCCGGTACAGATTACGGATGTCCTCTCCCGCCGACACGTTGCTGTGCCCACTGGCGAGGAGGAACTGCTGCCCCTCGGTGAGAGGCTGGTCAACGATCCGGACTCGTTCGAACCGTTTCCCCAGCGCGGTCTGCACCCGGACGTTCTCTCGCCACGCGTTGCCCGGCTCGGTGGAGATCTCCGCGCCTTGCTTCCACCGGCGCCACTTCGGGCTGTTACGGTCAGAGGCGTATCCGCGCCGGGTCTCCAACCGGAAGGCAGTGTGCGCGAAGTCGCG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGCCCCG # Alternate repeat : GTGGTCCCCGCGCGTGCGGGGGTGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4519596-4519018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4519595 29 100.0 32 ............................. ATCCCGGTCGCCCCGGACCTCGACCAGTTCGA 4519534 29 100.0 33 ............................. CCCCGTCCCCCCGGTGCCAGGACGGCCGATCCG 4519472 29 100.0 32 ............................. CCGAAAGGCACTGGTCAGACGGCTCCGGTGAG 4519411 29 100.0 32 ............................. CAGTGCGAGCGTCGACGACCCTGCGTCGACGA 4519350 29 100.0 32 ............................. AGCTGCTGACCATTCCGGGTCGTCGTGTCAAC 4519289 29 100.0 32 ............................. CGCATGTCGTACTGGACGAACCCGGGGATCGC 4519228 29 100.0 32 ............................. GCGTTCCTGGCCACGCGGATCAGCTTCATCAA 4519167 29 100.0 32 ............................. GGTGTGTTCGCTCGCTGGGTCACTCGCCGGGT 4519106 29 100.0 32 ............................. CTGCCCGGCCTCACAGGGGAACGTCGAGCCCA 4519045 28 89.7 0 .......................CC-... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.0 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTGCCGCTGCTGGTGACCGAGAACGGGGCGGCGTACGACGACTACGCGGACCCGGAGGGCCAGGTCCACGACCCGGAGAGGGTGGCGTACCTGGACGCGCACCTCACGGCCGTACACCGGGCGATCGAGGACGGGGTGGACGTACGCGGCTACTTCCTGTGGTCGCTGCTGGACAACTTCGAGTGGTCGTACGGCTACAGCAAGCGCTTCGGCATCGTCCACGTGGACTTCGCGTCACAGCGCCGGACGGTGAAGGACAGCGCGCGGTGGTACGCGGGGGTTATCGCGCGGGGTGGGCTGGAGCGGGGGTAGGGGCGGGGCTGGGGCGGGGCGGTCGGCGCTCGCGCCCGTAACCGGGCCCCGGCCTGCCTTGCTGTGCTGAAGAATGGGGCTGGGCGGCTTGCGCCGCGGGCACCCTATGAAGTGAGGCCGATATGTCCGTTTCTCAAGAAGTAAGGAAAAACAGCACCCTGGCCGCGTAAACGCGCAGGTCAGGAACT # Right flank : GGCGGCTGGCCGAGGAGAACCGCAGAGGCGCTGAGGGCCATCGGCAGCTCAAGCTGTCGTGCTCCCGACTGATCGCCCGGTGGCGGGCGGCGACCGCCACCGGGTACTGACGGGTGCTGATGAGTCCCGGAAGGAGACAGCTGCCCCGGGTGCTCGCCGAAGGCCCGGCCGATAATGGGGCCGCGAGAAGGCTGGTGTGCGGGGCCGACGGAACCGGGTAACGTCTTGTCGTATTCTTCCGGGCGCCGATTTACGAGTGAGAGCGTGATGGGCCCCTGCTGACGTCCTTCGACGTCGCCGCCGCCCGTCCTCCACCGATGAATCCGTCAACCACTTCACGCATCATTACCGGGAGAGCCCATGACCGTGAGCAAGAACATCAACAACCCCGTGGGCCAGGGCGGCGGTCAGCGCAAGAGGCTGTCCCGCGCCGAGCGGCAGAACAACGGTCCGCACCGCAACCTCGACCGCCGGAGCGCGGCCGACCAGAAGGCGGAGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4695126-4693387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4695125 30 96.7 31 .............................C AGCGACGCTGGCGCACAGCATAGCCAGATGT 4695064 30 96.7 31 .............................C CGCGGAACGCTCAGCTAGCACGACAGCCGTA 4695003 30 96.7 31 .............................C AGATCGGCAAGTCGACCCCGCCGGACGTCGA 4694942 30 96.7 31 .............................T GCTGCCACGGATCAAGCAGTAGACCGGCCCG 4694881 30 100.0 31 .............................. GCACGGTGACCGGCCACTTCACCCCGTCCAA 4694820 30 100.0 31 .............................. GCCCCAACTCACCGTGGCAGTGGGCGCTGCA 4694759 30 96.7 31 .............................C TCAGCTGGACCCGATTCAGCGCCGGGGCAGT 4694698 30 100.0 31 .............................. TCTCCCACTCGTGGGACGGGCCGCGCGCCCG 4694637 30 96.7 31 .............................T CGCCTACCTCTACGACGCGTCCCTCGCCAGC 4694576 30 96.7 31 .............................A GCCCGTCCAAGGTGAGGAGGAGTCCGGCCTT 4694515 30 96.7 31 .............................C AAGCAGATCGGACACGAGCCCCCGATGATCG 4694454 30 96.7 31 .............................C AGCGCGGCCGACCTTTGCCCGAGCCACCCCG 4694393 30 96.7 31 .............................A AGGGCACCGTGTCGAAGCTGATCAAGTCCTT 4694332 30 100.0 31 .............................. GTGCTCCAGGGGTGGGGTGTTACGGGGTGGG 4694271 30 100.0 31 .............................. ACGGCCCGGGGGGTGGGTCACGCCTCCGGGT 4694210 30 100.0 31 .............................. ACGGCCCGGGGGGTGGGTCACGCCTCCGGGT 4694149 30 96.7 31 .............................T ACCACCCCGGCTACCTCGATCTACCACCCCG 4694088 30 100.0 31 .............................. TCTGATGGCCACCCCCATGCAGCGCGGCGCC 4694027 30 96.7 31 .............................C AGGAGCCCTCGACGGCCCCCGAGGAGACGGC 4693966 30 100.0 31 .............................. TGCCTCAGTACGGGGACCGTGCTGCCGGTCG 4693905 30 100.0 31 .............................. CGTCACCGATCGCCCGGATCACCTGAGCGCT 4693844 30 96.7 31 .............................T CGTCCTCCCAGCGCTGCCGCGCCATGGTCCG 4693783 30 96.7 31 .............................T CCCACCCGCCCGGGGGTCCGCCGACGGTCGC 4693722 30 100.0 31 .............................. TCCGGCGGTGGCAGGCCGAACCGAGCGGGGT 4693661 30 96.7 31 .............................T GGAGGCCGGTCAGTACCTGGATCGCACGGCG 4693600 30 96.7 31 .............................T GCCCGTACTGCAAGCGGCTCGACGGCACGGT 4693539 30 93.3 32 .........................C...T CCTTGGAGTGGCTGGTCAAGCCGGTCTTGGGG 4693477 30 96.7 31 .........................C.... TGCCCTCGGCGGTGGAGACGTCGATGTCGGT 4693416 30 76.7 0 .....................CATCC..GC | ========== ====== ====== ====== ============================== ================================ ================== 29 30 97.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TCAGACGAGGAGATCGCTACCAAACTTGCCGGATCGCCCGGCTGGGTGCGTGAAGGGGACGCGATCACCCGCACGTTCGGGATTCGGTACCACGGCGGCGTCGCGATGATCGTGAACATCGCGGATGCCCAGCGACTCATCGGCCACCACGCGGACATCGACCTGCGCTGGGACCACGTACGGTTCCGCATCACGACACACGACGCCGGACACCGCCCCACCACCGCCGACTTCGACCTGGCCGCCCGGATCGACCGTATCGCGACGGCGCACGAAGCCCAGGCCCACAACTCCGGATCAGGGCGCCCGGGTTGTTCCGGCAGTATTCGGTGAACGGCCTTTCGGCGGTGACGATGAGGCATGCTGGGCGTGCGGCCGGGGGAGAAGTCCTGTCCGCTGCGTTCAGCCTTGGGCCACTCACAGAAGGAGACGATATGTCCGTTTCCCTGGAAGTAAGTAAAAACAGCCCCTCAGCCACCTAAACCCGCAGGTCACGAACT # Right flank : CTTGACCGTCTCTCGGGTCCCAAGCCTCGGGATTCGAGGCCGGTCCGTTCACCCTTTCTCGTGTACGGGTACGGGGCCTGGCCCGAAGCTTGGGCTCCGAGGCCCGGGGTTCGAGTGCCCTCTTTAACCGGCAGGCAAGAGAAGGGGGTTGGGAAACCCTCCCCACCCCCCACCCAGGTCACAGCTGGGGAAGTATGACTAATGGTGACGGCTTGCGGCGGAGCGTTACGAGTGCTTACGGTTCGAGAACTAAGCGACCCCGACAGGTGCTGAGACACCAGGCCGGGGTCTGACCGCAAGATCGAACACCTTAGAAAGACGATCCCGTGGCTAACCAGCACATTAGCTCCGCCCTGCAACCTCCCGCACTCTCCGACGCGTACCCCATGGCGAATCCGGGCTACGGAAAGCGCTCCGCCCCGGACCAACAGCCCCGTACGCGTGATGACTTCACGCTCCTCCCTACCCGCGAGCGGTACGTCGCCGGGTTCATCGACCAC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 4710911-4709906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4710910 29 100.0 32 ............................. AGCTGGTCACCGTTACCCTGCGACGATCAGCC 4710849 29 100.0 32 ............................. CCTGCAGCGATGCATTCGTGACGAGGCGCTCC 4710788 29 100.0 32 ............................. CGCACGTCACGCGACAGGCGCACCGTGCCCTC 4710727 29 100.0 32 ............................. TGCCCCGGCCCTTCTTGTTCCGGTGCTTTGAA 4710666 29 100.0 32 ............................. CCGACCCTCGCCTACCACTGCAAGAAGACCAT 4710605 29 100.0 32 ............................. TCCCGGCTCCCATCCGGTCGGACACGGGCTGC 4710544 29 100.0 32 ............................. CGCCAGTCCGAGCGCCAGTCCGGCAAGAACGG 4710483 29 100.0 32 ............................. AAGGCGCCGCCGATGCTCGTGGTCCGGGCGCA 4710422 29 100.0 32 ............................. TGCGGCCACCCCGAGCCCGACAGCCCCATCGG 4710361 29 100.0 32 ............................. CTGCCTCCCGCCTCCGCTGACCGTCTCGTCCG 4710300 29 100.0 32 ............................. GTCGACTTCCACGCGGTCAGCGTGGCGACCGA 4710239 29 100.0 32 ............................. GTCACGCTGCACAGGCTCGGTTGAACGAGTCC 4710178 29 96.6 32 ............................T CCGAGCAGGAGCAGGCCGGAATTTTCCTCGTC 4710117 29 100.0 32 ............................. TGACGACCTTGGCCCGGGCGGTAGTACCGCCG 4710056 29 89.7 32 ............T.C......A....... TGCTCGAACCGGAGCACGGGCATCGCCTGGAC 4709995 29 93.1 32 .....................A...C... CAAGCCGCCCAGTCCCGCGCCGGGTCCTCGAA 4709934 29 82.8 0 ........T....A...A...A......A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.8 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCCGGTCGCGGGCGATCTTCTTGCTGGTGGCTGCGTCGAAGAGTCCGTGCCCGTCGTGGGATACGACCATGGCGAGGTCGTGCCCGGTCTCCGGATGGACGGCGAAGCCGATGCCGAGCAGGCCGCCGATGGGAATGCTCCGGTCCAGGACTGGATGCCAGGGCGCCGGGGACGGCATGACGGGAGCAGCGAGGTAGCGCTCACGCAGGCGCTGCTGGTACTCCGTGATCAACCTGTCTCCTCGATTCGGTTCACGCTCAGGGCCTCTCGCACAGCGTGCCAGGTCGGCTCACATGCCGTAAGGCTGGTCCCGGCTGGCAATCACTGTCCAAGGGCGGCATGGGTACGGAGGAAACGTGTGTACCGGTGGCGGGTGTTCGGGACAATGAGGGCTGCACGGGTTCCGACGGAAGCTACCTATGAGGCTGGGGGATATGTCCGTTTCTCAGGAAGTGATGAAAAACGAGCCCCTGGCCTCATAAACCCGCAGGTCACGAACT # Right flank : GCGGGCTTTCGCCAACCCGAAGCAGCAGGTCAGAGGGCTGCTGTGATCGGCTCTCGCGGTGCTCCCCCTGGTCGTGCTCCCGAAGCGGCGGGCAGTCCGGGGTGGCGCTCCAGCTCTCTGCGGTATCCGAGCCGGAAGGCGCAGCCGCCCCGCTGGCCCGCGCATGGCACCCTGGTCCAGTGCTCCTGAACGATCTCACCAGCAGTGTCGACCTCCGCCCCGTGCGCTATCAGTTCTCCACGGTCCGGGGCGACTCGTACGACGACAACTGGCTGGTCATTGACGGTACGGTGACGACTCCCGAGGGAAGCTGGTCCTTCACCGAACCGTGTCTGCTCACCAATGAGGCTCTCCAGGTGGCCGCGTGGCTGCGAGCAGTGGCCGCAGGGACAGTGGCCGTGACCGGACCCGATGCCGAAGGTGAGCTGTCGCCGGACATCTGTTTCATCGAGCCGGTCGTGGCTTTCAGCCTCGCCGGTCGGAGCGAGGGCGGGGCCGTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 4890629-4889562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4890628 30 96.7 31 .............................G CGGCTCTCCAGGGCCTTGAGCCGCTGCTCCA 4890567 30 100.0 31 .............................. CCGAACCGGAAGGGTCCTCCCATGCTGCCCA 4890506 30 96.7 31 .............................C CGGCGGCGACCAGGGGGTGGGTAGGCATCCC 4890445 30 96.7 31 .............................T ACCTCCCCGACGCGCTGCCGTCCCCGGCCGC 4890384 30 96.7 31 .............................G GCTCGGCGCTTATCCACCACTGCGACGGAGT 4890323 30 100.0 31 .............................. GGCCCTTCCATACCTGGCCGACCTGCACCCT 4890262 30 96.7 31 .............................T CAAGACCCACCGCGACGTTGTCCGTCTCCCG 4890201 30 96.7 31 .............................C CAGACCGCAGGCCGATGTTGACCGGCGGGCG 4890140 30 100.0 31 .............................. GCCCGTCCAAGGTGAGGAGGAGTCCGGCCTT 4890079 30 96.7 31 .............................C AGTCCTACGGGCTAGGCACCTACTCACCGGT 4890018 30 96.7 31 .............................G ACATCCGCATCGACCTCGACGAGGACGCCAT 4889957 30 96.7 31 .............................T CGGCGGCGAGTTCGTCGATGAGATCGGGGCG 4889896 30 96.7 31 .............................C GGCTGTGCCCGTCCTCGTCCAGCCACGCCTT 4889835 30 96.7 31 .............................G CTTCCCCCGACCCGATCACGACGCAGGAACA 4889774 30 100.0 31 .............................. CGGAGGCGCGGGCACACGGGCGCACGGGCAC 4889713 30 100.0 31 .............................. CTCGCGCCCCGATCCCCGTCCGCTGGATACA 4889652 30 96.7 31 .............................T GACCGCCAACTCTGCGCCGTTTGATAGTCGG 4889591 30 86.7 0 .G...........C...........C...T | ========== ====== ====== ====== ============================== =============================== ================== 18 30 97.1 31 GTCGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : TCATCGAATGCACCACCTGCGGCCGCCCAGGCCAACCAGAGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCACCACCCACACCAACGAAACCCAGCCCCCACCCGCCGAGGTCGCCGACATCAAGGCACATATGGCCAACCTCCGAGACCTCCTCAAACCCGTCTGAAACCAACAACGGTGGCTCGACCCACACTTCAGCCAGCCTGACAACGCCTCCTGCGCGGCCCTGACCGAGACCCTGGACACCGAGCTCGCGACAGCGAACAGAAAGCCCGCGAACGCTCCCGGCCTCCGCTGCGCAGTGACTAACCTGCGGAGAGGACGAAGCCTCGCCCGCAAGGAACGAAATGCCTGCCGCAACCAGCGGAAGGCAGCACCACTCCTGACAGACACAGGTCCCGGCCCAGCCCGCCCGCCCCATAGGGGAGAGATGTCCGTTTCTCAAGAAGTAAGCAAAAACGAGCCCCTGACCGCATAAACCCGCAGGTCACGAACT # Right flank : TGCTCCAGGGGCACAGCATCACGGTCACCCCGTGGTCCCCGCGAATCTGTTGATCACCCCACCCGCACCACCAGCTCGGCCGACGACGCGTTCGCCGCCTCAAGCGTGGGTATCCCTGCCCATGAACTGACCGGGCCACCGACGAAAGGGCACCCCGTGACGATGAGGGCCGACACCGCAAACCCCCGCTGGTTCACGTCCTCGTACAGCAACAACGGCGGCGCATGCGTCGAGGTCGCCACCAACCTCGCCGCCGCCCCGCACGGCATCGTCCCCGTACGCGACTCCAAGAACGACACCACCGGCCCCGTCCTCGCCATCCCCGCAGCCGCGTTCACCTCCTTCGTCGCGGGCGTCCAGGCCGGGGAGTTCGACGCCGTCTGAGGGCCCCGACCGAGAAATCGGCCGACTGCGCCTCAGAGAGGGGACCATCGGTTTCCCGTCCTGGAAACTGAAGCCCCTTGCCCTCCTCACCTCGGACCTGGAGGATCAGACGAGAC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 4895246-4894241 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020563.1 Kitasatospora albolonga strain YIM 101047 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4895245 29 100.0 32 ............................. TTGGCGCTGGCCCGGCCGGTCTTGCACGGGTG 4895184 29 100.0 32 ............................. GCGTTCGAGTCGATCCCGATGCGCCCCGAGGT 4895123 29 100.0 32 ............................. ACCCAGCACACTACCCGCCGCCTGCGCGCCGC 4895062 29 100.0 32 ............................. TTGTCCGCCTCCGCGAGGGCTAAGGGAGTAGC 4895001 29 100.0 32 ............................. CGAGGACGTTGCTCTGTGACGAGCGTACGAGA 4894940 29 100.0 32 ............................. ATCAAGCCCGTCCTGCTCTGAGCGGGCGTACG 4894879 29 100.0 32 ............................. GTCCACCAGCCGTCGTAGCCCTCGGGGATCGC 4894818 29 100.0 32 ............................. GCCCGGCCGCTGCTTGGCCGGGGGTGGGAGGA 4894757 29 100.0 32 ............................. GCAGAGCGGGAGCCGACCGACAGCTCCCCCCG 4894696 29 100.0 32 ............................. GGCCATCAGTCGGTGTCGCAGTCGTCGCGGTC 4894635 29 96.6 32 ............................T GATCAGAACTTCTCTCAGTACCTGGAGTGCTT 4894574 29 100.0 32 ............................. AGTCCGCGGTAGAAGCCCTCAAGGAGGGCGAG 4894513 29 100.0 32 ............................. TCGACCGTCGGCCCGGTCAGCGCCCCGGACGC 4894452 29 100.0 32 ............................. CACTACTGGCACCTGTGCCTTTTCGCGGAGAA 4894391 29 100.0 32 ............................. CCCGTACGGAAGAAGGACCGCGTGACCATCGA 4894330 29 100.0 32 ............................. GTCCAACCCACTGCGGTGAGTTCGTCCGCGAC 4894269 29 75.9 0 ......................CACCTTG | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : AACACCCCCACCACCCCCACCCGCCGCATCCTCATGGAATGCACCGACTGCGGCCGCCCCGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCACCACCCACACCAACGAAACCCCGACCCAACCCACCGAAGTCACCGACATCAAGGCACACATGGCCAACCTCCGCGACCTCCTCAAACCCGTCTGAGAACCAGCAGCACGGGATCACACGGGATCACCCAAGTACCTTGCCCTGGAACCTGACAACGCCTCCCGCACAACCCTGGCAGAAACCAGGGGCCCCGGGACCATGAGAAGCAACGGAAAGCCACGAACCCTCCCGGCCCCTGATGCGCAGTGACTAATCTGCGGAGAGAACGAGCCTCCGGCCCGCGAGGAGAGGCAGCTTCCGGCTCGGCCTGACCGCCCGATGGGGGAGAAATGCCCGTTTCTCAAGAAGTAAGTAAAAACGAGCCCCTGGCCACATAAACCCGCAGGTCACGAACT # Right flank : CTCCAGGGGCCTTCATCGCGTCACCCCGTGGTCCCGCGCACCTGCTGATCAACCCACCCGCACCACCAGCTCGGCCAGTGACGCGTTCGCCGCCTCAAGCGTGGGTATCCCTGCCCATGAACTGACCGGGCCACCGACGAAAGGGCACCCCGTGACGATGAGGGCCGACACCGAAACCCCCCGCTGGTTCACGTCCTCGTACAGCGAAAACGGCGGCGCGTGCGTCGAGGTCGCCACCAACCTGGCCGCCGCCCCGCACGGCATCGTCCCCGTCCGCGACTCCAAGAACGACACCACCGGCCCCGTCCTCACCATCCCCGCCGCCGCGTTCACCTCCTTCGTCGCGGGCGTACGGTCCGGCGGGTTCGACGCCGCCTGACGGCCCGACGGACATCGGCCCACGGCCGTACGACGGCAAGAGCCTCCTACTTCCGGAACGGGAAGCCGGAGGCTCTTGCCGTACGGAGGGCACGCCGGAACCACGCCCGGAGCGAGGCCGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //