Array 1 668044-664635 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059082.1 Halomonas titanicae strain SOB56 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================= ================== 668043 28 100.0 32 ............................ ATAAACAACGTGGCCGCATTTTGAACATTCTA 667983 28 100.0 32 ............................ GCTCACAGCTTGATGCTCTTGAGCGTCAGCAC 667923 28 100.0 32 ............................ TAGACGGAATATTGGAGCGCGCTCAGCAGCAG 667863 28 100.0 32 ............................ ACCATGCCGCGCTGATAGTCGCCAAATTTAAG 667803 28 100.0 32 ............................ TGCCGTAGCCGTGATTTTCGTACCCGTACGAC 667743 28 100.0 32 ............................ TGGGCGACTTGGCGCAAATTGACACGCTTAGC 667683 28 100.0 32 ............................ AGTCGCATCAAACTGTAAGTTCAAGCGACTCA 667623 28 100.0 32 ............................ GCTGGTTTTATTTGCAACTTTTCTAAATGTAT 667563 28 100.0 32 ............................ TGAAGCTGAGATTGACACCGACGAAACCGAAG 667503 28 100.0 32 ............................ TCTGTCACCGTCGCCGCTATCAACGTCCAGGG 667443 28 100.0 33 ............................ CTCAAGCGTTAGCCGCTTAGACGAATCTGTCAA 667382 28 100.0 32 ............................ TGATGGCCGGTGGCAGTATTCTCAACCTTTAT 667322 28 100.0 32 ............................ TGAATGACAAACGTCCGGTCGTAAACAAGCCC 667262 28 100.0 32 ............................ TTCATCAATTTCAGCTCTTCTGATGTTTGAGC 667202 28 100.0 32 ............................ TCGTAACGCGGAAATGAATTGTTCGTCAGGTC 667142 28 100.0 32 ............................ ACTGAAATAAATAAAGCCATCTCCATCTAAAG 667082 28 100.0 32 ............................ TTGATAACAGCGGCTGGCTGTGGAACCGCTGG 667022 28 100.0 32 ............................ AATATCGAGCGGCGTTTCCCCGTCACACAAGA 666962 28 100.0 32 ............................ TCCTGAATCAGGCCGCCGCCGATTCTTGCCTC 666902 28 100.0 32 ............................ AGGAGAACTATAGACCTAATTCCACCCGTAGT 666842 28 100.0 32 ............................ TGTTCACACGCCCAAAGATGGCAAGTGCTCAT 666782 28 100.0 32 ............................ TGATGATATGAATACTCGCATGAGTCACGCAG 666722 28 100.0 32 ............................ TGCACCAAAAGGAAAATCTGTTCAGGAAAATA 666662 28 100.0 32 ............................ AGCCGGTGGACTGTCTTTGAACAACCCTTACC 666602 28 100.0 32 ............................ TAACAACTAGAACATTATAGCCAAATGTTGCA 666542 28 100.0 32 ............................ TGGACGTTTGATAGGTTTATCGAAAACAAAGA 666482 28 100.0 32 ............................ TGAATGTCTCCGCTTCGTTTCGATAGCCTAGC 666422 28 100.0 32 ............................ GCAAAGCCGTCAATGAAATGCTGATTCCGGAA 666362 28 100.0 32 ............................ GGCCTTGATGGCGGCGTAGATGCGCGAGCAAT 666302 28 100.0 32 ............................ ACCATGGTTGCGTCATTGCCATTGTAAAATAC 666242 28 100.0 32 ............................ TCCGACTACCTTGTGACCGAGGATTTATGAAA 666182 28 100.0 32 ............................ TTGGGGCGAAGCGCCCCAGATATAGACACAAA 666122 28 100.0 32 ............................ CAGAAGCCGGTAAAGCTCTATGAATGGCTGTT 666062 28 100.0 32 ............................ TCGCCGAATCAGGGGTAGAGAATCAACATGAT 666002 28 100.0 32 ............................ TTCTAGCAGCGCTTTGAGCTCATCTTCCTCCG 665942 28 100.0 32 ............................ GCAAAACGCGGCAAGACCTGGAAGACGCTAAC 665882 28 100.0 32 ............................ TCTGCGAACAGCTCGGCGGGCGTCGTCTCGTC 665822 28 100.0 32 ............................ GACAAGCTGCTTGAAAAGTTTTGAAGGTCGAT 665762 28 100.0 32 ............................ AAGTGGTAGCGGTACATCCACTCTTTAGTACC 665702 28 100.0 32 ............................ TAGGAGCTGCAAATGGCTCAGCAACCTAGATG 665642 28 100.0 32 ............................ TAAACGAAAAGCGCATTCACCCAACCCAGAAG 665582 28 100.0 32 ............................ TGACAGCTTGGTTGGAAATGATGGGTTAGCTG 665522 28 100.0 32 ............................ TAGCGATAGGCCGCATCGGAGAGTGCAGTGGT 665462 28 100.0 32 ............................ TTTGGCCTGGGCCTTTGCTACGGCGGCAGTGC 665402 28 100.0 32 ............................ TTGAGTAGCCAGCCCGGGCATAAAGCTGATTC 665342 28 100.0 32 ............................ AGTCAGCGTGCTATTAACGACGAACAGGTCAA 665282 28 89.3 32 ..T........TG............... ACCAGTCGCGCGGCTTCACTTGGACGCATGCC 665222 28 89.3 32 ..T........TG............... ATTCTGGCGTCCTAACCGATGCCGAAGGCCAA 665162 28 89.3 32 ..T........TG............... ACAACGACGATGCCCGGGCCATGCTGGATAAG 665102 28 89.3 32 ..T........TG............... TGTCTGAGCGTCCTTGGCTTCTATTCTCCAGG 665042 28 89.3 32 ..T........TG............... TGACAGGCGCTCGGAAGTTTGATCCAGCATAC 664982 28 89.3 32 ..T........TG............... TTATTGGAGATTACTTCGCTCCGGCACAACAA 664922 28 89.3 32 ..TA................A....... GCTGCCGTTGAGGACGAGCTCGTGCCATACTT 664862 28 75.0 109 ....A...............TATG.TT. TAGATTTATTGAGTGTGCCCGTGGCACCGCTGCGCGGTGCTTTCGCGGGTGCGCTAACGCTTACGCCGCGCTACTCGAAATGTGCATGATCCGTAATGAGTGGCAATGT 664725 28 67.9 35 .G.T.T.A...TT...AT.....G.... AGTGTGGGAGTTCGAGTCTCCCCATCCCATCCGCA 664662 27 85.7 0 ..T.................-.A....G | T [664638] ========== ====== ====== ====== ============================ ============================================================================================================= ================== 56 28 97.4 33 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CACGGCTGGGGCAATTGATGGGCGCTGATTGGCTCACCGGCATGCGCGATCACACCCAAGTCAGCGAGCTGCTTGCCGTGCCCGCCAATTCTCAGCACTTCAACGTCGCGCGCAAGCAGTTCAATACGGGCAGCCCAAGCCGTGCCAAACGCTATGCCAAGCGGCATGACATTTCGGAAGATGAAGCGCAGCAGATTTATGCCAAGCTAGCGGCGCGGCGCATTGAGCTACCCTTCGTGCAAATAAACAGCCGCTCCACCCAGCAGCGCTTTAGCCTGTTTATTGAACACGGCAAGCCTCAGGAAAAACCGGTGGCGGGTTCGTTTAATCACTATGGCTTAAGCCCTGACGCCACAGTGCCGTGGTTTTGCCCCTTTTTTCTAACATGAAAATAGGCGACCAATAATCAATCACTTAGCGGTGTCGCTCGAAAAAGGGTGATACCGCTTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : CTTGATGTAAGGTATGTACCCTTATACGCTGCGCGGTGCTTTCGCGCCGGGCCACCGCTGCTAGTGCGCTGGGGCCTACGCCGCGCTACTCGGAATGTGCATGGCCCGTAATAAGTGGTCATGCGCGTATTGCCGAGCAGCTATTCAAATTCGCCCTAACAAGCCACCGCGTGGGTGGCTTTCGCTGAATTTCGATCAATGCTAGGGCTTTAATCTTCTTGCGGCGGTGTTTCTAGCGCGCGTTTGTCGTCGGGTACCCGGACGATGTGGCCGACTTCCAGCTTGTCGTGGCTTTGGTGGCGGCCGCCGTTGGTGTCGATGATGGCGGCGACTTCGCCGATGCTGACGGCGTCATCTTCTCGGTAGGCTTCTACTTTGACGCGCACCATGGCGCCTTGGTAGCGTGCGGAAATGATGTCGCCCGGGTCGGGTTGGCTGCTTTGATCCGGGTGTTTTTTAAAGTACTGCATAACACTGGCGCTGCCAGGTTCGTCCCATTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2996448-2992210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059082.1 Halomonas titanicae strain SOB56 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2996447 33 100.0 35 ................................. TCGCCGACCGACACGGACGCCGAGAGCTTTATGAA 2996379 33 100.0 34 ................................. ATCCTAAATTAAGGTTACTTTGAAAACTAAAAAA 2996312 33 100.0 36 ................................. GTGTAGACAATCTGGGTCGCCCTACGCACTTTAACG 2996243 33 100.0 36 ................................. TTTAATCGTTGCGCCGCATTTTGTGCATTCGTACTC 2996174 33 100.0 34 ................................. TGTGGTTAAGGATTTACGTGAGCGCTTTGGCGTG 2996107 33 100.0 35 ................................. GCGAGGTTATCCGCTATGCCGATGCTTGGCAGAAT 2996039 33 100.0 35 ................................. AAACACCTCGTTAAGCGTACCGGCTAACGGGAATG 2995971 33 100.0 34 ................................. TATCTACGCAAGAGGTGGCCGAGTTTTACAGCCA 2995904 33 100.0 34 ................................. TGTGCCGATTGGCAAGATCGTGTCAGAATACCGC 2995837 33 100.0 34 ................................. CAAGGTTATGGCAGCGCGAAACCGCGGCGGATCG 2995770 33 100.0 34 ................................. TTGCGTTGAGTTTGACAGGCGTTGCGCTGATATT 2995703 33 100.0 34 ................................. GTGCGTGATATCCGGTTCTGGCCCATTGATGAAC 2995636 33 100.0 35 ................................. TGCTGCTTGCTGCACGTAAGCACCAGCCGCATTAA 2995568 33 100.0 34 ................................. CGCCAGTGCCGGGTGGCGAATATGAGGTCATGTG 2995501 33 100.0 35 ................................. ACATAAAACAGCGTGGTGCTACTCCATGCGTACTG 2995433 33 100.0 33 ................................. ACCGCCACCCTCGCGTATCCGGCGTGCAATGGC 2995367 33 100.0 35 ................................. GCCAACAGTTTCAAACGTAAGCGCATCGTAGCCCG 2995299 33 100.0 33 ................................. ATCCAAGAGTCAGGTGGTGCGGCCAGCATCCTG 2995233 33 100.0 35 ................................. ATCCAGAGAGGCAGCCACGTTGGAAAGCGGCGCAT 2995165 33 100.0 35 ................................. GCTGGGGTAAAACACCCCCACGCGATATGCGGGCA 2995097 33 100.0 36 ................................. TAGCTTAGCAGTGCTTAGCAACGCAAACGCCGCTTG 2995028 33 100.0 34 ................................. CACCGCCGTCGCCCGGAGTTGATCTTCCAGCGAA 2994961 33 100.0 34 ................................. AACCATGCTCTTGAATGCGTGCGGTACTGGCACT 2994894 33 100.0 36 ................................. GCCGCCCATGGTTAGCGCGGCGTTTTGGCCGTCGAT 2994825 33 100.0 35 ................................. GTTTACTTTGGCGTGGGCCCTTGGTGCGTTTGGAT 2994757 33 100.0 34 ................................. TGTGGAGTCAATGTCGCCATTGAAATTACCTCAA 2994690 33 100.0 33 ................................. TGTACGTTACTGTCACTCCTGCGATGGAGCTTT 2994624 33 100.0 36 ................................. TTTGCAGCTAGTGAAGCCGTCCTCTTTTTGGCTGGG 2994555 33 100.0 36 ................................. ATGCATATGTAGTGATTCATCCCAACCACCCCTCAA 2994486 33 100.0 35 ................................. TGTTGACGCCCGCTCGCCTTGTTGGTTGCCGATGT 2994418 33 100.0 35 ................................. CTGGGCTACCTGAATCAAACGGAGTTGCTTAAATG 2994350 33 100.0 35 ................................. CCTCGCTATGACGTTACTACTTCCACGCTAGGCGG 2994282 33 100.0 35 ................................. TGGCCTATCGATGAACTAGAGCCCGGCGGGCTGCC 2994214 33 100.0 35 ................................. CAATCGAAACATCGCCCCCCTGAACTCTTACTCCG 2994146 33 100.0 33 ................................. CTAGGTCGCGGACCACACCAAGCAAGACGCGCC 2994080 33 100.0 33 ................................. AACAACGTCATGCTTTGCGCGTACTGCTGAGTA 2994014 33 100.0 35 ................................. CAGCTCATCACAAATTAGGTCACGCAGCGGCAATA 2993946 33 100.0 34 ................................. CCAAGCTCCAACTTTGCGTATATAGACCAGGCCG 2993879 33 100.0 34 ................................. TGTCAGTAGAAAACCAGAACAATAAACTTTGCAT 2993812 33 100.0 37 ................................. ATTGCGCTAGCTCCTCTGCTGTGTAATCGCGTGACGC 2993742 33 100.0 34 ................................. TTAACAGCATTGCTGCCACTAAAATAGATAAAAC 2993675 33 100.0 35 ................................. CACGCTAGGCGGCACGGGTACGGTAACTTTCAACG 2993607 33 100.0 36 ................................. CTGGCTATGCGGTGAAATACTTCCGCTGGACGGATG 2993538 33 100.0 35 ................................. AATGGCGACATTGACCCCACAGAAAGCGGACTTTG 2993470 33 100.0 36 ................................. ATCTCAGTGGGCAGTCCGAATTAAGCAGGGTGTTAG 2993401 33 100.0 35 ................................. ATGCGCAAGTTAGCAGGCTCGGCGCTTTTTTGACG 2993333 33 100.0 35 ................................. AGCATATCCAGGCTCGCTAAGTAGCGGGTAAGCGT 2993265 33 100.0 35 ................................. CACGTATACCTACACGGCCACACGAACGCCATAGA 2993197 33 100.0 36 ................................. CATGGGTGTGCGTATAGCTTTGCTGCATCCTCCAGC 2993128 33 100.0 35 ................................. ACCGAATACGACTCAACCGAGCATGATGCTATCTG 2993060 33 100.0 36 ................................. AGGATTAGCCGAGTAAGCACAGTGTCGAAAACGTCA 2992991 33 100.0 37 ................................. TCGAAGCGCCCCGAGAAGAAGGCTCCAAAGCCTAAAT 2992921 33 100.0 35 ................................. ACCCTTCCGAATGCCGACTCTTGGCGAATCGGCAA 2992853 33 100.0 36 ................................. TCTGGCAGCGGCTCATCAAGCGTACCTGTATCAGTC 2992784 33 100.0 33 ................................. TGCATACACTCGCGGCAATCCTTCACCGCCACA 2992718 33 100.0 36 ................................. ATTACTGTGTTTGCCGTGATGGCCACCTCCTGGCGG 2992649 33 100.0 35 ................................. AGTACGCTCTAGCTTTTCGGCAATCTGCCTAACGC 2992581 33 100.0 35 ................................. GGCAGCATCGACATTAGTGCTAACGATCTGATCGA 2992513 33 100.0 35 ................................. ACAACAGCCATCACGCGAGCTGCCGGAACTACCTT 2992445 33 100.0 34 ................................. ATCGGGTACCGTGCGCTTTTCCGCCGCCTTTGGC 2992378 33 97.0 35 ................A................ AGCACTGGCAATCTGCTGAATATCGGCACCACGGC 2992310 33 90.9 36 ..............A.....C.....G...... TCTAAATGGTGACTCATCGACGCGCCGGGGGCAAAT 2992241 32 87.9 0 ..........-.A..A.....A........... | ========== ====== ====== ====== ================================= ===================================== ================== 63 33 99.6 35 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : TAGCATACTGAGGGCAATATCATGATGGTACTGGTCAGTTACGATGTCAGCACCTCCTCAGAGGGTGGTGAAGGCAGGCTGCGGCGAGTAGCAAAAGCGTGTCGAGATGTAGGGCAGCGAGTACAATTTTCCGTGTTTGAAATTGAAGTCGATCCCGATCAATGGGTACGCTTCCGTCAACGCTTGATCGACTTGATTGATGACGAGGTGGACAGCTTACGCTTTTACTTCTTAGGCCGAAATTGGAAAAACCGCATCGAACATATTGGCGCCAAGCCCGCCTTAGATATGAATGGCCCTTTAGTTTTTTAATGTTTCTCTTGTTTGCGAACCGCAAGTGTTTTGCCAAACCCCGTCAGGTTCGCAGCTCTTTAATAAATTGATTTTAATAATAAATTCTTTCGCCAACTCCTTTGCACCAAGCAAGATCGTCTGATACTCAGCGTTTCGCAAAAGCATGTCTTTTTGCTTTTATTTTTCATGATGTTATAAACAGAACG # Right flank : CGCAAAGAGTAGCGACCTGAATAAAAACACCTGCGTAACTCACGTGGTAAGCCTATGGCGCATCCGCGAATACAGCGCGCAGCGCTGCTTAGATGATCGGCAACAGCGGCTAAAATTATGCATTATTTGTAGTGGCTCCAAAGCCGAAGCACTTTAATTACCCCTTCGTCTTCAAGTACCTGGCAAACCAAACGATGCTGAATATTGATGCGCCGTGAATAAGCCCCCGCAAGATCACCGATGAGCTTCTCAAACGGAGGTGGTTTCCGATACGGGTCTTCTGCGATCAGTGCTAGCAGCTCCTGTGCCTTTGGCTTCAATCCGCTGGAGGCTAACTTCTTCGCGTCTTTCTGAGCGTGTTTGGTGTAAACCAACTTCCATGTCACCAGTCCAACTCCTCGTCGCACTCATCCACTGGGGTCTCCATTCCCTCACGAACAGACTCTCGCATCCCTGGCACAGAAAGCAGGAAAAGCGTCTCCTGAATGGCAGACCAGTCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //