Array 1 9815-9486 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDIC01000003.1 Escherichia sp. E4208 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9814 28 100.0 33 ............................ AAGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC 9753 28 100.0 32 ............................ CGGCACCAGCAATGGAATTAGCGAAAAGCGGG 9693 28 100.0 32 ............................ GTGTACGCGCATTGGAGTAACCGCAATTAACT 9633 28 100.0 32 ............................ GTTCAATTATCAAATATTACCCGCGATATGAT 9573 28 100.0 32 ............................ TGCGATAACGAAGCTGTTGTTTCGTCGCCGTT 9513 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : T # Right flank : CTTAACTCACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 115164-115553 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDIC01000046.1 Escherichia sp. E4208 contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115164 28 100.0 32 ............................ ACATCATGAACGCGCAGCAAAATGCGGCTATT 115224 28 100.0 32 ............................ AATCCGGATATGGTGATTTATATCTACCCGCA 115284 28 100.0 32 ............................ GGTGCGACGGCAGCAGCCAGCTCCGGGACAGA 115344 28 100.0 32 ............................ CAGTCCGCCAGCTCGTTCGTGCCGCCTGATAA 115404 28 96.4 33 ..........A................. AAAAAGATGTCCTCCTGCCGAGTACAGCGGAAT 115465 28 100.0 32 ............................ TAAATTTGAGGGTGAGGGTAAGCGGGGTTTCC 115525 28 92.9 0 ....................T...C... | C [115548] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACTGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAGGAAGTTCAGACCCTTTTTTTGATGATGATGGTAATTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCCACAACACGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCGCACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGTATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGTGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 130197-130333 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDIC01000046.1 Escherichia sp. E4208 contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 130197 28 100.0 32 ............................ TCTTTCATCTCCTCCAGTCTCGCCCACGCAAT 130257 28 100.0 33 ............................ AAATTCTATGCATACTAAATTATTGACACTGAA 130318 16 57.1 0 ................------------ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 85.7 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCCCCGCCAGGCTGTGCAATATGCGAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCATAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTGTTTTGAAGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : | # Questionable array : NO Score: 4.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //