Array 1 173953-173582 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635452.1 Holdemania sp. Marseille-P2844 strain Marseille-P2844T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 173952 33 100.0 34 ................................. AACTCATTGCCAATACAGTTATAAAGCAATTCTG 173885 33 100.0 34 ................................. AGGGCCGCCGGAGCGGCGTGGGATTATCTGCAAG 173818 33 100.0 35 ................................. CTTTTGTTGATAATGACGATCTCATAAACTTTGAG 173750 33 100.0 35 ................................. CATAGCTGCGGAAACACTCATGACGCCCGTTGAGG 173682 33 100.0 35 ................................. CCGTTAACTACGATGGTGAAGATTGGTCTGTAGAG 173614 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 100.0 35 TTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAGCTGATAATTGTCAGCAGTTAATTGAAAATCCTCAGGCTTTATCTTCGGAAGAAATGGCTATGCGAAAACTTCGCGGGCAGTTATTATTGGACCAGCAAGCTGCCGCTGAAGGATATACAGAGTGTATACAAAGTGAAATTGATTCTTTTATACGTCAGGAATGTCTTATCAATCGAGAAGGAAAATTATCTTTATCCGCTGAAGGATTGGGAACTTTCTGGTTTAGCTTATTGAATGATGCTTATTATTAAAAACTGATAAAGGTCAGGAATGTCTTATTGGAGACAAACCTGGCCTTTTCCTAAAATTAGTAATGAATATTTTCAATAAAAATTGAGGATATTCTGGTGCGAACCAGAAGTGAACATGAAAATCCAGGGAGGTTCGCACCGGAAAGATGTGAAAATTGAAGGAAATATTGCAAGTGTATCCAAGATTGTTTATCATAGAATTGAAATAGGAAACAAGTAAAAGTCATTGAGTTTCTTATTTGCGG # Right flank : TATAAATATCAGTTTCTGAGCACAAGCAGCGTATGAATTAAAACTTTTTCAAATCATGTGAATTAATTAGATTGAACAAAAAAGTCTCGCTTAAGAATAAGTAAGATTTGCTCCAACACAGAAATGTTTTATTGGAAAACTCATGTCAAACATTGTATCGGTTATTATTAAATTGCTCCGCTAATCTGCTTTACAAAAAAGTAAATCAATAACTTAAACAAAAGAGTTCAGCTAGCAGAACTTGAAAAATCAAAACTCCGACAACCATGAAACCAACACGATTGTCTATATTCAACCCCATTATTCATAAAAACTCAAAACATCGACCAAAATCATAAAAATTCAAAAAGTGGTACGATTTTGGTACGAATGGAAAACTAAGGAATCAAAAAAGCCCTTAACTAAGGGCTTTATCGTTAACTGGTGCCGATACCCAGAATTGAACTGGGAACTGAGCATTACCATTGCTCCGTTTTACCATTGAACTATATCGGCAGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 178050-179026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635452.1 Holdemania sp. Marseille-P2844 strain Marseille-P2844T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 178050 33 100.0 34 ................................. TGTAATCCATCCGCCAGTTACGTCGCTGCATTGA 178117 33 100.0 35 ................................. ACTTCAAATAATGCCTGTGTACCCATAATCATCAT 178185 33 100.0 34 ................................. TTTTTACGCGTCGGGCAAATAACCGGACGGAAGT 178252 33 100.0 34 ................................. ATATTGGCGGATTTACTATGGCTGACCCTGGATC 178319 33 100.0 35 ................................. ATTTTGGTTTTGATGAGGCTCCGGAAGTGGTTGCC 178387 33 100.0 34 ................................. CTGCCATTTCATTATCCTCTCTTTCTGCCCTTGC 178454 33 100.0 33 ................................. GGCACGTTATTCGACACATAGACAGTAAATCCA 178520 33 100.0 33 ................................. GATGGTATGACCCGCGAAGAATGCGCCGAGATC 178586 33 100.0 34 ................................. TATCCGGATACACCTATGACCTATCTTACCGTGG 178653 33 100.0 33 ................................. GCTGGCGAATCTTGAGCAGGCGCAGGAAACCAT 178719 33 100.0 36 ................................. TGAATGGCCATAACGCCGCCGGTCTGCTGGACATCC 178788 33 100.0 35 ................................. TTCAGAAGTTGACAGCATTTATTATCAATCTGAAT 178856 33 100.0 37 ................................. ATTCTTGAAAGTAAGCAAGGTGCAGAAACATCAAACG 178926 33 100.0 35 ................................. TAGAAGTGTAGTATACACAGCCTCACCAGCACTAA 178994 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 15 33 100.0 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GCAGATGATTTCGGATTCACTGTGCGGACAGCGCTGGGCGAGCAAAGCGAGTGTTGTTTTCTATTGGTCGCTAGTAGCCTATCGTTGCGAGTGGCGATATGGGATTCGAGCGCATCGAGTGGCATTGATCGATGTGGGACATGTTGGACAGAATTTATATCTGGGCTGCGCCGCGCTAAATTTAGGGATTTGCGGGATTGCGGCGTTTGATGATAAAGTTTGCAGTGACATTTTTGGATTGGATAAAGATGAGGAATTTATTATTTATACTGCACCTGTAGGAACGATTAGTTCTGCGGATATTGAGAAAGAAAAAGGTTTCTATCGATTTGTGGAAGAAGAAGGTCTTTAAGTGCGAACGTGAAGTGAACATAGAAATCCTGGGAGGTTCGCACCGGGAAAATGTGAAAATTAAAGAAAATATTGCAAGTGTATCCAAGATTGTTTATCATAGAATCGAAATAGGAAACAAATAGAAGTCATTAAGTTTCTTATTTGCC # Right flank : TCTCTTTCTTAAATTTATCCATAACCTTAAGACATGTCCCACTGGCAGTGCGTGAATTTTTGCCAATCGTTTTATAACTATAATTTTATCTCAAGCAATGTATTGATTGTTATGGTATAACGCCGTTTTTTTGTTGTTAATCTAATTGATAGAAGTTGACTTTAGTTAAATCTTATTTTCTGGTAGGAATAATTAGAAAATGGGATATAATATAATTATTAAAGACTGTTGTATTAGGAGGTGTGTTTATGTTATTAGCACACTGGGATGGGGAAGAACAACGAGCACAATCCTTAAAAGATCATAGTGAAAATGTAGCAAGAATGATGGAAGAAAATTGTTTTTCGCTTGGCCTTACATCAACTGGACGATTAATAGGATTACTCCATGATGCAGGGAAAGCCAATCCTGTATTTCAGCAATATATGCTTGAAAATCAAACAGAGAAGAAAGGGAAAATTAATCATTCGGCAGCAGGTGCTCAGATACTAAGGAAACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 187394-188119 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635452.1 Holdemania sp. Marseille-P2844 strain Marseille-P2844T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 187394 35 97.1 33 ..A................................ CTGCCCTGGGGCATACTGATTTTCATTATACAT 187462 35 97.1 34 ..A................................ GGCGAAAATCATGGCTATGTTTGAAGCTATGAAA 187531 35 97.1 36 ..A................................ TTATGTAGAATTTCTGGAAAACCAGAAACGGATCTA 187602 35 100.0 34 ................................... TCCAATATGCTTCAGCTTTGGGATTAACACCAAA 187671 35 100.0 33 ................................... CGATTGTATGGTACGGTGGAGCGGATTTATCGA 187739 35 100.0 35 ................................... CACTGGTCCGTAAAATCGAATGACAATCTGAATCT 187809 35 100.0 33 ................................... GAAAACTGACTCCTCCAAGTACCGGCCAACCTT 187877 35 100.0 33 ................................... GTCGTACATGATATCGAGTTCTTCTTCAGTAAA 187945 35 100.0 35 ................................... CGACCAAAAAGCAGCACGATCGCACAAAGGAGGAA 188015 35 100.0 35 ................................... AGCCCATCGAACAACCTTAATATTTGTCCCCATAG 188085 35 94.3 0 .................T...A............. | ========== ====== ====== ====== =================================== ==================================== ================== 11 35 98.7 34 GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Left flank : AGGGGAGATTTAGATGCTTATCCGCCATTTATGTGGAAGTAGAGGCAGTTTATGTTGGTTTTAATTACTTATGATGTGAATACGGAGACGAAAGCGGGGCGGACGCGTCTGCGGAAAGTTGCTAAGCAGTGTGTTAATTATGGTCAGCGAGTCCAGAACTCAGTTTTTGAATGTTCTTTGGATAATGCAAAATTAATAGAAGTGCAGCATTTGTTGGAGGGCTTGATTGATAAAAATGTTGATAGTTTGAGATTTTATATTCTCGGCAATAAATATAAAAATAAAGTAATTCACATAGGTGCAAAGCCAAGCTTTGATGTCAATGATCCACTTATCATTTGAATAATAGTTTAGTGCGAACCTGAAGTAAACATAAAATGTCTGGAGTGTTCGCACTTAAAATCAGGCTAAGTTTAATGAAATATCACAAGTTAAATTTAATGAGTTAATTAAGTTCTTAAATAAGAAACTATATTCTATATTTTCGTTTCTTATTTGCG # Right flank : TTTCAGAATACAGGGGTTGCTGTTAGATCTATTCAAATCCTATTATCAGCACCCAATGTAAGGAACAAAACTAAATAGGTTATACCATTTATAAATGTAATGTTGATCAAATCTCGAAGTATACAGGAAGTATGAGACAAATATCTATGAGGTGGAATCTATTGAATATTAAAGATATGATGCGAACCCCCGGATGGCATTTTAAGACTGAATAAACACAGACATCTCCGATCCATTTAGCAATTCCTTGGAAATAGACTCTGATAATTAGTAAACTGTGGTATACTAAAGAAAAAGGAGTGATCCCGATGCAAGCCAAGAATGCCCCGCGCTATCAACAAATCGCAGCGGATATCGCTGCTAAAATTGCCGGCGGCGAATATAAAATAGGAGATAAAATTTTTGCCCGTTCCTCCCTGGCTTCACAATACCACGTTTCCAGTGAAACAGCGCGCCGCGCTATTTGCGTTCTTTGCGATATGAAAATTGTGGAATCCATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Alternate repeat : GTAGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 234703-234139 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635452.1 Holdemania sp. Marseille-P2844 strain Marseille-P2844T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 234702 33 100.0 33 ................................. ACCGCGGACACCGGCGACAATGAACCATATTCC 234636 33 100.0 34 ................................. TTTTAGAACCCGTTCTCTGTTCGCTTCGGCTTCT 234569 33 100.0 33 ................................. CCATCAGGACAACCGCCATCTGCCAACTCATCT 234503 33 97.0 34 .................A............... TACTTGTAATTCAATTATTCGGATAAAATCTGCT 234436 33 100.0 33 ................................. TTGATCCGCTCTTTCACACGCCGGATTTCTGTG 234370 33 100.0 33 ................................. ACACCATGCTCGATAAAGCATGAATTCGATCAT 234304 33 100.0 33 ................................. TGACAAATTCCTAATCATTGAAAAAACACCTGG 234238 33 93.9 34 .........T.....................G. TTATTACCTATATAGGTCTACGCTATAGGTTCAC 234171 33 81.8 0 ......T..T..A.T.....C..T......... | ========== ====== ====== ====== ================================= ================================== ================== 9 33 97.0 34 GTCATACCGCGCGAGCGGTATGTGGATTGAAAT # Left flank : TGGTTTATTTCCAGATCGTGCAGCAGTTTGAAAACAATTTGATTTACCCGCGGGTTGTGGGGAATTCCGTAGGTCTTCCGGGGATCTGGGTCTTGTTATCCATCGTAGTATTCGGCGGTCTGTTAGGGTTGTTCGGAATGTTGATCGCAGTTCCGGCAACGGCAGTTCTATACACCTTGTTAGGTGAATTCGTCAATGGCCGGATGCGGAAAAAGGGACAGATTTTGGATGAATCCGGATTGCTCAGTCTGGATTCAATTTCAAGTCCTAAGCAGGACTCTTCATCTTCGAACGAGAATCAATAAGCTTAAGCGCAAGGTCTTCAAAGGCCTTGCGTTTTTTGTCAATTTGAGTGCGAACATGAAGTGAACATAAAAACCCAGGGAGGTTCGCACCGTAAAAATGTGAATATTAAGGAAAATGTTGCAAGTACACTCAAGAATGTTTATGATAAGAGTGAGATAGGAAACATATGATCTTAATTCAGTTTCTTATCTGCG # Right flank : CTAAGACCTGTATACCTGCTGATCCACCCGTTCATACCTATCCTTGTACTCACACACTAAAAAACCTGTTTTCTGCCACCTTAAGCTGAGAAAACAGGCCTTTTTCATTTCACTCTAATCTACATCCTGATCTGTATCGTTCCAAGCTCGGATCGTACAACCATCCTGATCCGGCTCCGCAACATAAACCTGGGCTGGATGATCCTGATCACTGACCACGAAAGCAAACTTGATATTCGTACCAACACCCCAGCGCCCTTCCTTATCGACGCAAATTAAGGAAATCGCTTCAGCCCTGCCCCGTTTCCGAATTAACTTCCGCGTGAATTCTGCAACGAGCGATGAAGCCGCTCTCTGGGGATCCTGTCCCTGCTGCAGTCGGCGTACCGCCTCATAGCTCAGACACCCTTTCATGATTTCTTCACCCACGCCCGTAGCGGCCGCAGCCCCGATTTCACTATCCGCATAGAAACCACTCCCGCAGACCGGCGAATCGCCCA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATACCGCGCGAGCGGTATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCATACCGCGCGAGCGGTATGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //