Array 1 1994603-1996205 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGJL01000001.1 Kingella denitrificans strain NCTC10995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1994603 33 93.9 32 CT............................... ACCCCTTGGATTACCGCATTAACCGAATCAAT 1994668 33 97.0 32 C................................ CACGCCCATGTTTTCCAATGCGGCAAGGTCTG 1994733 33 93.9 32 CC............................... ACACAGCACCAGTTGCAACAGCGGTTGCGCTT 1994798 33 93.9 34 TG............................... TGCGGCGGCTCTATCACGGATTTTCTGGATGGTC 1994865 33 97.0 33 .T............................... CAAAGGCAACCTTATCCCTTTGGCGAATATCAA 1994931 33 93.9 32 GC............................... CGCGCATGGTATCAGGCACGGCGGCCAAACCG 1994996 33 100.0 33 ................................. ACGCACAGCAACGGCGGCCAGGTCAAATCCATC 1995062 33 97.0 33 .G............................... AACATCCGCGCCAGCCAATCGCGCAGCCAGTCC 1995128 33 100.0 32 ................................. CAGCGCCATGTCTTTGTTATAGCCGATGTACC 1995193 33 97.0 34 .C............................... GAAGTCGATTTGCACAGCCTTATCCGTATGGATG 1995260 33 93.9 33 CG............................... CGTTTCTTATCCGCCATCCCGCTCACCATTTCC 1995326 33 93.9 32 CT............................... AGCCCTGTTTTTTTTGCCATGGTGTCAATCTC 1995391 33 93.9 32 CG............................... AGTTTGCCCGGCTCTTGGGTTTGGGCAAGGTG 1995456 33 97.0 33 G................................ TTCCAGTGTTACCATATTTCGTCCTTTCAGCTG 1995522 33 93.9 31 CC............................... ATGATAAAACCCCCGAAAGGATAAGACTTTC 1995586 33 93.9 33 GG............................... GCGGGTTACGGCGATATGGGTATCGGTTTGCGC 1995652 33 93.9 32 CC............................... CTAGTCGAACTCTCTTTTGAACTGGGTTTGCC 1995717 33 93.9 31 GC............................... TTCAGGCAGTAGAGCATGGTTTAAGAGGACA 1995781 33 93.9 33 GC............................... ACTGAAAAACTGCGTGCACACAACATGGTTTTG 1995847 33 97.0 32 G................................ TGGCAGCGCTACCAATGCGACGTACTGCCCGA 1995912 33 100.0 32 ................................. TGGTTTGTGGCAGCTGGCCCACTGCGCGGAAA 1995977 33 100.0 32 ................................. AAAGGCGATAACAGCGCCATCCGCCTGTGCGA 1996042 33 90.9 32 TG....................T.......... CGGATACCGTCAAAAGTAATCGTTGTCATACC 1996107 33 90.9 33 GC....................T.......... AACCGCTGGATATTTTTACGCACATCGTTAATC 1996173 33 78.8 0 GT...C.......A......C.T.........T | ========== ====== ====== ====== ================================= ================================== ================== 25 33 94.8 32 AACAGTCGCCTTCGGGCGGCTGCGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATGGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGAGAGCTTAGCGAAATTGGGGTTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGG # Right flank : TACCCTGATTCGCGCCATTTTGAACAAATATGCGACCAACCACCTTCGGGTTGCTGTATTGAAACGACATGGAGGCGGATAAATTGGATAAATAAGCGTGTACTGGAATATGAAAATTTGGTGTAAAGGCAGATAATGCGTAGCCACTTCTAGATAACTCAGTATTAGGGCAAATAATTTAACTCGACACTTTAGCTGAGCAGCATGCAGCTTTTTGAATATCCCAATATCCACGTTTTTGCATAATCGAAATTGATATATATGTTATATGTTAAGGTGGAATCAGATAGGTACTAAAAGTCTTTTAGTTATTAAAATAACAGTATAATAATATTTATATAGCTAATATTAATAAACTTTTATTATCTCTAAAACAGATTTTTAGATATTAATAATGTTATTTAATATGTTTTTCATATCATGTGCGTAGATTAACCAGATAACATTCTCAATATAAATGTGCAGGCTGCTTTTTCACGATTTAAAAAGCAGCCTGCACT # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGTCGCCTTCGGGCGGCTGCGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //