Array 1 389494-390254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048264.1 Gilliamella sp. ESL0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 389494 29 100.0 32 ............................. TTGTAGTATTCACAACTATACAACCCGATAAA 389555 29 100.0 32 ............................. CCTGAAAAATTACCCCTCATCATTTGTGTCAT 389616 29 100.0 32 ............................. CAACATTAAATCAATTTTTAGCACTCTAATTG 389677 29 100.0 32 ............................. GAGGCGATTAATGAAATTAACTAAAAATTTCA 389738 29 100.0 32 ............................. GGACGAAGACCGTTGCGGGTAATCGTATTATA 389799 29 100.0 32 ............................. TCAAAAATTCTGAAGACAGCCCCCTCGGGAAT 389860 29 100.0 32 ............................. CATCCGCAACAGCTTGCCCTTCGCCCTTTTTA 389921 29 100.0 32 ............................. AAAACTACAAATTTATTTTCATGGACACAGGG 389982 29 100.0 32 ............................. CTCTCGAATTCGACTCTACGGGGACGATGGCA 390043 29 100.0 32 ............................. CACGGCAAGATGCGCTCAGGAGCGATTTAAAA 390104 29 100.0 32 ............................. CCGTCCCTAAATCTTGTCCGCTTTTAGTTAAT 390165 29 100.0 32 ............................. CCCACGAATTCGCTCACTACAAAAATTAAACC 390226 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCTGTATACACAGGGATAAACCG # Left flank : CTGATTGAAGAGGTATTATCCGCTGGTGGTATTGAACCGCCACCGCCTCCTGATGATGTCCCCCCGCCTGCAATACCAGAACCTCCATCACTTGCCGATAGTGGTTTTAGGAGCCATTAATCATGAGTATGTGTGTTGTGGTGACTGAAAATGTACCACCTAGATTAAGAGGACGCTTAGCTATTTGGTTATTAGAAATCAGAGCCGGTGTTTACATAGGCGATATTTCCAGACCGGTAAGGGAGATGATTTGGCAACAAATCATCGAGCTTGCTGAAGAAGGTAATGTTGTACTTGCTTGGGCAACCAATACTGAATCTGGATTTGACTTCCAAACTTATGGTACCAACAGAAGAGTGCCGGTAGAACTCGATGGACTCAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAAGTTAACGTTCTTTAAAAATTTAAAAAATCTGGTAGAATTTTATGGTCGCTATAAGTTTAAATAAAACAAATAGCTACGTTTAGA # Right flank : ACTATCTATATCATAAAAACTCAATTTGTAAAATTTATGGAATTTGAAATTATCAGAATATCTAGAATCGTTAATGCATTAGGGATCATTTCAATTTTTCATCCATCTTTTCATAGATCTTAATTGGCTTAATGGGGAGTAATGTTTTGCCTTTTACTTCAAACTCAGAATTATTACTGGAGACAACTATTATCTGTCCTCTTTCTAAGTTAAAATCTAAAAGTGCATATGGTTCTACAAAACCTAAAAGAGAAAACTCCCTATCCCTGTTATCCGGAGGAAATTCGTAATAGACAACTTTTTTATTATATACGTATACAACTGTATTAGAAAGATGTTGAGCTATTCCAAAGTCAGGATTCTCATCAGAAAATTCTACTTTTTTGACATCAATATTTTGTTCCCGCATTAATGTAATATAAAGTCCACTAATACTGCCACTGATTAACCAAACTTCATCCCATTTAAAATTAGTATAATCAGAGAGTGTTATGGTTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1030246-1030577 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048264.1 Gilliamella sp. ESL0441 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 1030246 26 92.3 36 .........A......T......... CCGCGTGCTAAAAACGGGGAATCGGACGATCTGAGT 1030308 26 100.0 35 .......................... CCGACCCGTGTCTTGAGCGCAAAAAAAGTGCTTTA 1030369 26 100.0 35 .......................... CCGATCGGTGAATGTATCAATGCATTTTCTATTAT 1030430 26 100.0 35 .......................... CCGCTGCTAAACTTGACCGTAGATTTTGCTACGGT 1030491 26 80.8 35 GA.......A......T...A..... CTGGAATCGATATAAAACAATATATACGATATAAT 1030552 26 84.6 0 G.A..T.T.................. | ========== ====== ====== ====== ========================== ==================================== ================== 6 26 93.0 35 ATGTTCCCTGTATACACAGGGATAAA # Left flank : AAAGACGGTGCTAAAAATTTTACATTACCAAAACCATAATAAAGCCCTTTTAGGGCTTTTTTTCTATGCTAGTTGTATGCTCTCAAAACAAACCCAGCAATAAATCTAAACAATATCATGTAGAATAATAGAATATTAAAATGAACTAGACTAAACGATATTTTTCACTTAAATGATGTCAACAAATGAATTGGTATCAAACATGTACTGAAAAATATATAAGGTGCAAGAATATAAAAATGTGTAATGCACGCTAGTTTGTCATTAACCTTTAACCAATCGATTACAGACACATCATGATTCCCAATTGTTTGGTAGACAAAAAACTCACAAGAACGACTATCGTGCAAAATCCCTTATAAATCACATATAACATATTGATTAAATTATAAATTTAAGCTATTAATGCTCAATCCCCAGTTGCTTAAAAAAGAATTAAAAAAATCGGTAGAATTTTTCACCTTCCTATTTTAATTATTAAACAATAAGTTATAATAAGT # Right flank : ACAAAAAACACATTAACATTATTTAAAGAAAGCGAAATTTATAATTCAGGAAAAGAATACATTGAAGCTGCTTAAAAAACTTATAATTTGTATATCAGTATTTTTAATGATCGGATGCAATCAAGCCGAACAGCCACAAAGTTCTAAAATCATCAGTGGAAAACCTTTTGATATTAGACACCTCGATTTTTCCGTCCCTATCGATACCTTTTTGTCTGAGTTTAAGGGTAAATACTACAAAGAACCTTTAGGAAAAATGACATCTCCCGATGATGATGAGGTGATTGGTTATACTTATATTTTAGTTCGATTAGCTGATGAAAATTTTTATTTCTACAAAGAAAACATTAAATTGGAAAGGATATTAATTATTACCGATTTAAACGGCACGATTTATTCTTATACGGGAGAAATAAAGTTACCTAAAAATGAGGTTAAACGTGCAATTGAAGATTTTCGACAAAAAAATAGCCAATATTTAGAGGATAACTTAAGAGGTG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1052186-1051852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048264.1 Gilliamella sp. ESL0441 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1052185 29 100.0 32 ............................. TAAAACTCCAAAATGTACGACTAGCATTCCCT 1052124 29 100.0 32 ............................. TCATTTTTGATTGATGTTATTAGCTCGACATT 1052063 29 100.0 32 ............................. TTTTATTTTATAATAAATTTTATAATCTCTCT 1052002 29 100.0 32 ............................. GCTATGCGGCTTCGATGATGTCTTCTCTTGGT 1051941 29 96.6 32 ...........................T. GAATCGATATAAAACAATATATACGATATAAT 1051880 29 75.9 0 ..A..T.T.G......C..........AA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGTTCCCTATATACATAGGGATAAACCG # Left flank : TGCAGAATTTTTTAAATCAAAATAATAGGTTAAATAGAAGCAAATTATAGCAATTATTTTTTTAATTTTAATAGAATCAGTTAAATTTTATATAATTAATTCGATATTCCTCCGAATCCACAGCATAAATAGTAAATATAATCCTTAGCATTTGTTTTTTATGTGTCTCTATAAATAGTTGGGGGCACGATCGATTATAAGTCTGAAAAACGCTTCTTAACACCAAACTCTTTTTTGGTTAAATTTATCAGTCTAAATTAATAGTCATAGAACATTAATCAAGCAAAAGAAGCATGTAATGACCAGAAGTTGGCGGTGCGTTGAAAAATCATCTGGATGGATACCGTAAAAAGTTTTTATTATTTTAGTATAACTAATTGATAATTATATAGATTTAAGATTAAGATGCAAAAACATCATTTGTCTAAAAAGACAGCAAAAGAAACGGTAGAAATTTTATCTTCCCTATTTTAATTAATAAACAATGAGTTATAATTAGA # Right flank : AAAACACATTAACATTATTTAATGAAAGCGAAATTTATAATTCAGGAAAAGAATACATTGAAGCTGCTTAAAAAACTTATAATTTGTATATCAGTATTTTTAATGATCGGATGCAATCAAGCCGAACAGCCACAAAGTTCTAAAATCATCAGTGGAAAACCTTTTGATATTAGACACCTCGATTTTTCCGTCCCTATCGATACTCTTTTGTCTGAGTTTAAGGGTAAATACTACAAAGAACCTTTAGGAAAAATGACATCACCTGATGATGATGAGATGATTGGTTATACTTATATTTTAGTTCGATTAGCTGATGAAGATTATTATTTCTACAAAAAAAATGTCAAATTAGATAGGATAATAATCATCACTGATTTGAACGGTACTATCTATTCTTATACAGGAGAAATAAAGGCACCTACGAAATGGGTTAAAAGTGCAATAGAAGATTTTCACGAAAAAAACAGCCAATATTTAGAAGATAATTTAATGAGCGAGAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1651305-1650544 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048264.1 Gilliamella sp. ESL0441 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1651304 29 100.0 32 ............................. TTTTAGATTAAAACAAGACGAAATGTACACCC 1651243 29 100.0 32 ............................. TAAAAAACGAGCCCGAGCTATTTTTTAAATTA 1651182 29 100.0 32 ............................. CTATTGAATTAGACCGTCTTAATGCGCAGCGT 1651121 29 100.0 32 ............................. TTGAAATTTTCTAGTCTCCAGAAACTGAGCGT 1651060 29 100.0 32 ............................. CGGATATTCCAGATGGTGTTTATTATCTAACA 1650999 29 100.0 32 ............................. CTTTTAAGTGAATGCGATGATATTGAATACAA 1650938 29 100.0 32 ............................. CTGGTGTAGATAATCAGTCAATTAATGGCTCA 1650877 29 100.0 32 ............................. TTAAAAGCCATTGAGCTAGACCGTCTTAATGC 1650816 29 100.0 32 ............................. TCGAAATAAAAACAAAAGTAAATCTAACTTTG 1650755 29 100.0 32 ............................. CCTTGGATTGCTGAAAAGCAAGATCGGCGCAG 1650694 29 100.0 32 ............................. GGGATTGAGCAGGGGTTAACAGAGCTACAACA 1650633 29 100.0 32 ............................. TTTTTTTACCCCAGCAATCCAGCATATACTCA 1650572 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCTATATACATAGGGATAAACCG # Left flank : GATCAGGGTGCTTTACTGCTTGAACAAGATGGCAAAATCGAAGCATATATTGGTGGCGAAATCTCTTTACGAAGTGATGAGTAACAAAGTGTTCCCTGTATACACAGGGATAATAAATGCTTATAAAGTTCAATAAATATCATGTTTATCAACTTTCCACTTTTGGATAAAAATGCTACCAAGTGAGTTAATGGCTTTACCCTGTTAATAACAAGTAGAATGTGACAAAGTACAAAAAGGAAAAATATTTCACAGCAATTCATCAAAATCCATTCCCAAAACCGAGAAATGAGCTTGTAATTAGAAATTGGTCGGTGCACAAATAAATTACAAGAAGAATAGGCGCATTAAACTCCTAGCTAAATTCAATTAACTAACTGATTAATATAAGTTAATGTGTTTAAAATATCTAAAAGCCAACTGAGTAAAAAAACAACAAAAAAGTTGGTAGAATTTTACACTTTGCTATTTTAATTAATAAACAATAGGTTATAATTAGG # Right flank : TTCGCATGCGAACAAAAATGGATAATAGGTAAGTTTTCTTTTATTCATAATAGCGCCAAGCAGGCAATTTTTAAAAATCCCTGCTTGGTGGGCGTAGATAGATGCCATATGGTTTTCAAAACGTCTAAAACTCATTTTTTGACAATGGCGTTTCTGCAACTTGTCATTTATGATCCTTATTTTTTAAGTTTAAGCAATCTTAAAGCATTGGCTGTGACAATCGCTGTTGTCCCCGAATCTGCTAATACAGCAAGCCAAAGTCCTGTAATACCAAATAGGCTGGTAATTAAAAATATCAACTTAATGCCTAAAGCAATTGTAATATTCTGTTTGATATTACGGTTAGCAAAGCGTGTTAAACGTATCAATTTTGGTAAACTCAATAAACTATTTTTGGTTAAAGCCGCATCGGCTGTTTCGAGTGCGACATCTGTTCCGCTACCCATTGCAATACCTACAGTAGCGGCTTTCATGGCAGGGGAGTCATTAATACCATCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1718091-1717882 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048264.1 Gilliamella sp. ESL0441 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1718090 26 96.2 35 .....T.................... CCGCTCAGCATAGAACCGCATCTACTACTACGTGC 1718029 26 100.0 35 .......................... CCGTTATTGGTAGCGGACATAATGGAACTATGTGT 1717968 26 96.2 35 .......................C.. CCGTATTATCAATTCTCCCCAGGAATTACAAAATC 1717907 26 96.2 0 ......................C... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 97.1 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GGAATTAGAACTAGTAAAAAAGATAATGATTTATGTATTGTAACTGTTAGCGGTGGTTCTATATGTAAAAGTGATGCTTCATTTTCGTACCAAAAGAAAAACGTAACTTATCAAAACGCTTTCCAGCAAATACTAATCTATAATGGCAAAGTAGGTAATAAGATTAACATTGGGTATAAAGAATTTAATAATGATTTTGCTCGCCCAGCATTTTCAAATAATGTTGAATATGATTTATCAGAATCTAAAGTAATAAGATATAAAGGCGCAAAATTAGAAATAATAAAAGCAACCAATCAATTCATTGAATATAAAGTATACAGTAATTTTAATTTGAGATAAAAGCCCTTAAGGAGGTTTGGAAAAGATTGAGAAAGGTACAAATAGAAGGTCAAAAGCATTGGTCTTTAACTGATTCTAAAACAGTTTTACCTATAATTAATAGTTTTCTTAACCTCTAAAGGCAAGCTAACTTTTCAAAAATCTAATAAACAGTTGGC # Right flank : CCGCAAGCAAAATTATCAGATTTATATAAAAATTTATATTCCCTATATATACTAAAAAAACCGAATCGGCAGATAATAACACCAAACTAGATTTAGTGTTCTAATACAATAAACTGCTTCAATATGAACACCATTAACATAAGAAAACGATTCCCCGTTTACACAAGAATATGCAATACTAACGCTGTGATGACAAACCCTTTCGTATCTGTATTTCTATTGATTTTATTTCATTTTTCAAATAATTGGAGTTTATTATGAAACTACGTAAAGTCATGATTATTGGAGTAGGGAATGTGGGATCCACGACGGCTTATACCTTGGTTAATCGAGGTATTTGTGAAGAAATTGTACTGGTTGATGTAAATAAAGATCGGGCTTATGGACATGCTCAGGATTTATTAGATGCGGCTGCTTATCGGCAAAACATGATTAAAGTCAGTTTACGTGATGCCAATGATTGTGCTGATATTGATATTGCGATTATTACGGTTACTTCG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1719762-1719187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048264.1 Gilliamella sp. ESL0441 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1719761 26 100.0 35 .......................... CCGGCGTTTGGGAAACATGCAGATCTAGGATACCT 1719700 26 100.0 35 .......................... CCGCGTGGAAAATGTTTAGGGTTAAACGTAGTTTT 1719639 26 100.0 35 .......................... CCGCAATGAGCTAAACGCCAAAAATTTCTCTTTTA 1719578 26 100.0 35 .......................... CCGCTGATGCTATCTAATCACGGCTATAGCGAAAA 1719517 26 100.0 35 .......................... CCGGATGCATTTAATGCATTTAGCTCATCCCCCCA 1719456 26 100.0 35 .......................... CCGTCGGAACAACTCATAGAGTGTTGTTTTAGTAC 1719395 26 100.0 35 .......................... CCGCTAACATTAACTGAATACGTTGATTCGTATTC 1719334 26 100.0 35 .......................... CCGCCGCTTTTCAACAATATTTACGGGACATCGAC 1719273 26 100.0 35 .......................... CCGAATTTCTTACAGAGGCGGTTATTAAAGGGCGG 1719212 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 10 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTGACGAACATCAATGCGTTGAATTAGAGTTTCCTGTAGACACAGGAAAAAAGAAACAATAGAGCAAAAAATAAGCAAAGATAAGATAAGGAGTTTCCTTTATACAGAAATAACCATTCAAAAAGATCCAAAAAGAAAATAGTTTTATCAAATCCTCAACTTTTTTTATTATAATTTCTTACTAGTAATTTGATTATTATGATATTTAAGAGAAAATCTAAAAAAGTAAGTGAGCAAAAGAAAGATCAATATTGAATAATTGGACAAAATCAAACACCGAAGAGTAAGATTTGATATAGTCATTAAAAATTACTCCGTGCGCATAAAAAGTTCAAAAGTGTGAGCTAATAAAAATTTGTTGTAAATACAGGTAACTATTTGATAAAAATAAAATTAAATTTTAAATATGTTTCAAAACAAACTGCACAAAAAAGCAACAAAAAGTCGGTAGAATTTTACGACTCCCTATTTTAATTAATAAACAATAGGTTATAATTAGA # Right flank : CTGGTGAGTGTGTTGTTGATGCTCGTACTAACGCTGATTTACTAGATTTTTTGCAAACATCTAATAAATCTGGGAGGCAATATAACTGTACATGTGCCCTTAAATGTTGGTAATAGCGGAATATCCGAATAGGATGGAAGAGCAATCAGTACTAACAATTATTGATGAACAAATGCGACCCTGTGGAAAACTAAATCGTCGTTGATTTATTTGGTTAAATCACATACTATTATCCAAAAATTGAGGAGAATGGTATGAAAAAGATAATCTTTTTAAGTTTATTAGGCTTTGTTTTAACCGCTTGTAGCACTGTGAAGTATAATTATGTAGTTGAAACAAAACAAATAAGCTATCCCGATTTGAATGTTGTTACAAAAACCTTTATCGGTGATGATATGGTTAGACAGGGAACGGTGGCATCAAGGGATGTTATTTATTTTCCTCAAACTACAGTAGTTAGCAGGGGAGTGGATTTTACTATTCATGCAGGAGAATATCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //