Array 1 440963-445157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072115.1 Streptococcus sp. zg-86 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 440963 36 100.0 30 .................................... CAAAAACAGCCTGATAACGATAAGCCTTCA 441029 36 100.0 30 .................................... CAAAATATTTATAAACTATACTGAAGAATA 441095 36 100.0 30 .................................... TCTTCATTTACATAAACCACATCGTTATCT 441161 36 100.0 30 .................................... ACACGGTCAAACAAAGCGGACTTTGAAAGA 441227 36 100.0 30 .................................... GCAATGAGATGAGCAGGTCTGCACAGTTCA 441293 36 100.0 30 .................................... CGCAAGCATATGACGAAAGGGCAATCATAA 441359 36 100.0 30 .................................... AATCAATCCAAAAGATATCCAAATACGCAT 441425 36 100.0 30 .................................... GAACCATTGCTATTCTAGCCTTATCCTCTT 441491 36 100.0 30 .................................... GAGACACTCATATTCTGATGTGCATGTGTA 441557 36 100.0 30 .................................... TTCTAGCTTCTACTGGTTTAAGAACACCAT 441623 36 100.0 30 .................................... AGTACGGATTCACAAGTTTGGCGATTTAGA 441689 36 100.0 30 .................................... TAGAGTTAGCTTTTTGGTCAATAGCGGAGA 441755 36 100.0 30 .................................... AATTCTTGCCGTACGATTTCCAAGATGTTT 441821 36 100.0 30 .................................... ATAAGGAACGATATACGCTTGCCCTAAACT 441887 36 100.0 30 .................................... TTGACGATACGATTTCGTTCAAACTGGATA 441953 36 100.0 30 .................................... CGCTGTACGATGGTCCATGCGCAGGAGTTA 442019 36 100.0 30 .................................... CTTGCGTGGAATCGAGTGTTTGGTGGAATA 442085 36 100.0 29 .................................... TGCGATACCATTCAATAACAGCATCTCTA 442150 36 100.0 30 .................................... ACAAGAGCTCTATTTCATTCATTAACTGAT 442216 36 100.0 30 .................................... TAAAAAAGTAAAAAAGCCTGACGGCAATCA 442282 36 100.0 30 .................................... TTGAAGCTGGATTGATGGAACGGTATTTGC 442348 36 100.0 30 .................................... CTTTAATTCTATTAATGTAAAGTACTGACT 442414 36 100.0 30 .................................... TAATTTTCGGTTCAGTAGCTCGACGTTATC 442480 36 100.0 30 .................................... TGGTGATAGTATGTTGCCACGCTACGAACC 442546 36 100.0 30 .................................... AAGATACGAGTCAAACCGTCCCAAGCGGAT 442612 36 100.0 30 .................................... GTTCCGTTAGTTATTCATGTGCACGTCAAG 442678 36 100.0 30 .................................... ATTAATGTGGTTTTTACCGTCAACATAAAT 442744 36 100.0 30 .................................... CGAATATCTGGACGAGCTATTGACACAGCA 442810 36 100.0 30 .................................... GGACTATATTGTTTCTATCTTCAGCGGGAT 442876 36 100.0 30 .................................... TTTCACGGTCAGCTCCTTCCGTCTTTCCTT 442942 36 100.0 30 .................................... CTAATGATTGTCACTTGCGCATGTCGGAGA 443008 36 100.0 30 .................................... AGATTGTAGCATATGAGACTTTATCAAGTT 443074 36 100.0 30 .................................... TTTAGCTTACAAAAATATAATACACCTTAT 443140 36 100.0 30 .................................... TCAACCAAAAAAAGAAATGAATATAGGGGC 443206 36 100.0 30 .................................... TAGCTTCTCTGCTTCTGCTAACGCAAGGCG 443272 36 100.0 30 .................................... GGACAATCGCTTGTTTTGTGAGATTGTCAA 443338 36 100.0 30 .................................... GATTGCCATGATTGGGGATAACAAGCATTA 443404 36 100.0 30 .................................... ATACCAAGCACGAGTACAACATTGGAGATG 443470 36 100.0 30 .................................... TGTTACAGTTCTTGGAGAATACCAGCCTGT 443536 36 100.0 31 .................................... ATTTTTTCTCCTCACACTCAACGTTTGGCGA 443603 36 100.0 31 .................................... TTACATAACAGCCTACGGACGTGTATATCTA 443670 36 100.0 30 .................................... GCCACACTACGATTATGCAATCGGTGTACG 443736 36 100.0 30 .................................... TGAATTTTTTTCTTGAACTTTTGTTCAATG 443802 36 100.0 30 .................................... TGCGATGCCGCTTTCTAAATCTTCGAGGGC 443868 36 100.0 30 .................................... GGCCAGAATTACGTGGTGAGTGAAGCGGCT 443934 36 100.0 30 .................................... GACCGAGCAGAAAAAGCTAGTCCAAATCAC 444000 36 100.0 30 .................................... CGATAATCTGCATCAGTCGCAATACGGTTG 444066 36 100.0 30 .................................... CAATAAGCCGCTTGTGATGACGCTCGGGAC 444132 36 100.0 30 .................................... AGAAGGCAGCACCAATTGATGTCACTCCTC 444198 36 100.0 30 .................................... TGGTATCATCGTCCACCTCCTCAATTAGCT 444264 36 100.0 30 .................................... ACTGGCAAATCGAGGTCTTGACTGCGGTTT 444330 36 100.0 30 .................................... ATAATTTTTATCCAATTTACGATTGGACGA 444396 36 100.0 30 .................................... TTCCAATTCCTAAGAAAGTATTTACTCCTA 444462 36 100.0 30 .................................... TTACGAAAAAATCAATTATTGTTAAGTCTT 444528 36 100.0 30 .................................... ATTTCCCAAAAAGACAAGCACTCCGATACT 444594 36 100.0 30 .................................... TACAAGTTAGTCATTACCACAAGAAAAAAC 444660 36 100.0 30 .................................... CACCATTAATAGCGGGATTCGACTGTTGAA 444726 36 100.0 30 .................................... CGGTATATCACCGTGTCTAAACACAATGCA 444792 36 100.0 30 .................................... TATAATAGATTTACCAGTTATTACATCACA 444858 36 100.0 30 .................................... TTTATTTTGTTTTGTATTTCGGTATAATTT 444924 36 100.0 30 .................................... GCGGACTTCTAGCTTTTGTCGCCCTCTGGA 444990 36 100.0 30 .................................... AGGAACCCCCAAAGGCGCTGCAGTTGATAT 445056 36 100.0 30 .................................... AATGGTATTTTTACAAAAACGCTTCAAATC 445122 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 64 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Left flank : TCAGTTGAATGAAAAACCTGAAGTGAAATCTATGATTGAGAAATTAGCATCAACTATTACAGATTTGATTGCCTTTGAATGTTTGGAGAATGAATTGGATCTAGAATATGATGAGATTACTATTTTAGAGTTGATCAAGGCATTAGGAGTACAGATTGAGACGAGGAGCGATACAATTTTTGAAAAATGTTTTGAAATTTTACAAATCTACAACTACCTACAGAAAAAACGGATACTTGTCTTTTTCAATATTGGAGCTTATTTAACAAGAACAGAGCTAGTGAAGCTATTAGAATATATTAGCTTATCGAATCAGACAGTCTTGTTTTTAGAGCCTAAGAAATTATACGATTTCCCACAATATATCCTTGACCAAGATTATTTCTTAACTGTTGAACATATGGTATAATAAGATAGAATAGTTGGAATCGGTTGGAACGAGAGTCTAGCTGAGACGAATGGCGCGATTACGAAATCTAGTAAAAAATTTTTTCTACGAG # Right flank : TTGAAACTTAGAATGATTTTCTAACAAGTATAAATGGATTGGGTGTCAATCTTAATTAGAGGAGTATTTTATTCTAAGATAGTCATTCCTCATAATGATATATTTATTTAATGAGGAACATGGTGAACCACCTAGAGCGATCTAGGTGCTTTTTTCATACAAATAATCTACAGGGAATGGTCTGTATTGTTATTAGTAAATCAGCATGCAGGTGAATGACTAGATGGTGCTTTCCTAGTCATTTTCCACTCTTTTTGGTATAATAAAGAACGGAAAATACAAGAAAAGTTTGTATCTTGTTGTGCTGAATATAGCTTAGGTATTGTGTAAAAAAAGACAGAGCTGTTCTAGCTTTAGTTAGTTGCAGTCTTGCCTCCCTTTAGAGAGAATCTTTCCTAGAATCAAGGAGATTCTTCGTCAAGATTCCTAATTTTTCTGTAGCTGTTGCGAGCTTGCTCGCTTTACAGATACGGATGCCCTAAGGGTATACAGTATGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCAACTGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1004581-1005670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072115.1 Streptococcus sp. zg-86 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 1004581 29 100.0 40 ............................. TTACTGTTTTCATGATATTCATGAGGTTTCCTTCTTTCCT 1004650 29 100.0 38 ............................. GAAATCAAAATCAGAAAAATCAACTGTTTTTTCAAAAT 1004717 29 100.0 42 ............................. TGAATAGGAAGTTCATTTGTGACTTCAACTGGAGCAGGTGTG 1004788 29 100.0 46 ............................. TTAATACGTTTGAACGTTTTGTTCATGATAGGTTTCCTTCTTTCCT 1004863 29 100.0 43 ............................. TGTTTCAAGTGTTACTGTGTATGACATAATTTATTTCCTCTTT 1004935 29 100.0 38 ............................. GCATGAGCGCTGTAATATTCATAATATTTCCTCCTTAT 1005002 29 100.0 43 ............................. AAACGGCCTTTAGTGATTTGAACATGATGTTTCCTTCTTTCCT 1005074 29 100.0 38 ............................. TCAAATCCGAAAAGAGATTTTAAAGTAAATGTAAATGT 1005141 29 100.0 38 ............................. GTATTCACTAATGTGTCCACCTGGTGAACATACGATTC 1005208 29 100.0 53 ............................. TTGCTCCTTAGCCACGTTAACTAACGATTGGATTTGGCGTTCGATGTCTGTGT 1005290 29 100.0 38 ............................. AGTCTGTCTTGGTTTTTGATTTTATCTAACGCTTCAAC 1005357 29 96.6 37 ...............C............. GCTTTAAAAATTCGTTTTTGAAATACTCAATAAACTG 1005423 29 100.0 46 ............................. AATTTAGTTTCCGTTTTCTTTCGTTTCATGAAAAATACCTCTTTTT 1005498 29 100.0 43 ............................. CAAGTTCCACTAGAACTTTATCTTCGTTAGATTGAATAATTGG 1005570 29 100.0 43 ............................. CAGCAATAAGAACTTGATTTGCAAACATAATTATTTCCTCTTT 1005642 29 82.8 0 ......................AAA..TT | ========== ====== ====== ====== ============================= ===================================================== ================== 16 29 98.7 42 GTATTACCTTACCTATAAGGAATTGAGAC # Left flank : CACGCTTCGAACAATCGGCCTTATTCGCTTCATCTAGATTTTGCTGATTATTTCAAGCCTATTATTGTTGATAGGGTCATATTGTCTCTGATTAATAGGCATCAAATCCACATGCCACAACACTTTGAATATAAGGAAGATGGGGCGGTGTGGCTTAATTCAGCTGGTAAAAGAATCGTTTTGGAAGCTTTGGAGAGCAAATTCCATACTCGGCTCGTTCTGAAGCATACCACCTATACCTATCATCAGTTAATACAACGTGATGTTCAACTGTTTAAAAAATTTATTTTAGGTGATAGGGATGTAAAGCGCTTTACACCATTTAAATACTACTAAAAGTCGGTCGAAGATTTTATAAATTGTATTGCAATTTATAAAACAGCAGTAGCAAGCTTTTTGCCTGCCGACCATTAAGCGATTGACCGACTTTTAATACGAAATACTTGAATAGTTTGCATATTTGTACTATAATTAAAGTGTTGACTGCCCTACTTGCAGTT # Right flank : TACTTATCTTGTCTTAGCAGTGTGTAACTGGTGCATTTCATTCTTGACATCATAAAAAATCAGAGGAGGAACTTGAATCCGACCTCTGATTGTCTATTTCTAGAAAGGAGTTACCACTTGTGGTAAAATCAGCCTATAGCTACCATGTTTTTATTCTTCCTTTTCTATTGAAAGGCATAAACAAGGGAGCAATAACAACAAAACTCACTCGCCAGAATTGGGAGCGAATACAAGTCATGGGAGAGTTGCCCTATTTAAGAGAGGATGAAACCATCCACTATGCGCATCATTTCTATTTCAATAAGGAAGCAAAAGAATTGATTCACAGCCCAGTTGTTGAGGGCAAGGAGACAGATGAATTTTCCTATCTCGTTGAAAATTATATTTATAAACCCACTTCTGAAAAGGAATATTATTATCGGATTTCTTATTTTGCTTCAGATGCTGTAGCAACTAGCTCACTTCACTTTTTTGACTTGAAAGTTGACTATATTTTATTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //