Array 1 95-2952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDL010000027.1 Flavobacterium psychrophilum strain 97570 contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 95 46 89.1 30 TGC.G...G..................................... AACCAAGTTCACAAGTACAAGACAAATTAT T,TC [99,104] 174 46 100.0 30 .............................................. AAAACAGAAGTGCAAATTAGCAAGGAAGTA 250 46 100.0 30 .............................................. TGGTTTGTTCCTTCGGATTTATGAGATGGT 326 46 100.0 30 .............................................. TAAAGAAGGTACTAACGTACCTGTGGGTTT 402 46 100.0 30 .............................................. ATATATTTGTACCATAAACAAACAAACTCA 478 46 100.0 30 .............................................. AAAATAAACCAAGCGTGTCAGACGATTTAG 554 46 100.0 30 .............................................. ATTGAATTAAAAATGCTTCAAGACACCGCT 630 46 100.0 30 .............................................. CCAAATGAATAACCAAACAACGTTGAACCT 706 46 100.0 30 .............................................. CTCACGCCTGAAGTTCTCATAGGCATTAAT 782 46 100.0 30 .............................................. TTACGAGCCAATTAACAGTAAAAAATACTA 858 46 100.0 29 .............................................. CCTCATTCCTGCTTCATCTGGATCCATAC 933 46 100.0 30 .............................................. AATATGCAACTTACGGATTGTTTCTTCGTC 1009 46 100.0 30 .............................................. ATTTGAATTATTATTTCAATCTGAAAGAGT 1085 46 100.0 29 .............................................. AATTTTCTAGTTCCGTTAATGCCTCTTTC 1160 46 100.0 30 .............................................. ATAGTTTAAAAAAAATATTTGCAAAACCAA 1236 46 100.0 30 .............................................. GAAGCGGTGGTTATTCCAGAAGTAAAGCCT 1312 46 100.0 30 .............................................. ATGGAGAGAATTACAAACCACACAAACCAA 1388 46 100.0 30 .............................................. CAACGCCAGCAAGCACAACACCAGCACCAC 1464 46 100.0 29 .............................................. ACGTTCAGAATTTCACAACAGAATTGTTG 1539 46 100.0 30 .............................................. TGACAACGGGATAGAAGCAAATGTTTCTAA 1615 46 100.0 30 .............................................. GAACTTCTAAAAAAAGAAACAGAGTACATC 1691 46 100.0 30 .............................................. TCATTAACCGACACCGTTATATTTCCGCCA 1767 46 100.0 30 .............................................. TGTATGCTAAATACCAATCTGAGGGTTACA 1843 46 100.0 30 .............................................. TAGAGGCTAATGCGTGGCATGGTGCTACAG 1919 46 100.0 30 .............................................. TGACTGGGCAAAAGTAGCCGTAATAGACAC 1995 46 100.0 30 .............................................. TGATTTTCTTGAATATAGTATTTAGCACGT 2071 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 2148 46 100.0 30 .............................................. GCTAATATGTGGCTCCTTAATGGCACACGA 2224 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 2300 46 100.0 30 .............................................. GAGTTCTCAGTCATCTGTCTTTTGTCGCCA 2376 46 100.0 30 .............................................. GGCATAAAATGATTTATGAAGTCTATTTGA 2452 46 100.0 30 .............................................. ACGCCTGTCACTATGTCGTCGTATATTTCT 2528 46 100.0 30 .............................................. ATTTCATCTATTTGCCTTAACTCACTATCA 2604 46 100.0 30 .............................................. TTACAAAAGCAGAAGAATCTGATTCTTTAT 2680 46 100.0 30 .............................................. GGTTTGCTTGAGCAGTTCTTCTCTGTGAAC 2756 46 100.0 30 .............................................. TTAATTCTGCGAATGGATTATGCCGAATTC 2832 46 100.0 29 .............................................. CATTGTCAAGTTTAGAAATTGACTACAGT 2907 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 38 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 317-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDL010000089.1 Flavobacterium psychrophilum strain 97570 contig00089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 316 41 97.6 27 -......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 248 42 100.0 27 .......................................... CTCTGCAAAAGCCTCATCTCCAATAGC 179 42 97.6 27 ............................A............. GCCTGCAAAAATACCCCTTCTAATAAC 110 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 41 41 95.2 0 ............................A............- | ========== ====== ====== ====== ========================================== =========================== ================== 5 42 98.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : C # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //