Array 1 262942-260718 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKUM01000002.1 Klebsiella pneumoniae strain AS012414 AS012414_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 262941 28 100.0 33 ............................ CTGCGAACAGCAACGACAGGGCTGCTGCACCAG 262880 28 100.0 33 ............................ TATGGCTAAAGCCATGAACCCCAAGACGATAGT 262819 28 100.0 33 ............................ TCACCCGTGAGGAAGCAGAAGACCTGACCATGA 262758 28 100.0 33 ............................ TAATCGCAGAGAGATGGGGTGGATAGTGGAGGA 262697 28 100.0 33 ............................ TCATGTCGAGCGCTTCCTTCTGGCTCGCCGTCA 262636 28 100.0 33 ............................ TGCTGGTACGGTAGAGCTGGACGCAGTGTTTTT 262575 28 100.0 33 ............................ TGAAATTGTGGCAACTAGAAGCCGGTGTATCGG 262514 28 100.0 33 ............................ TGACCAGAGGATAACTGGTGGCGCTACTGCATT 262453 28 100.0 33 ............................ TGATGACGGGCTGCTTGAGTGCCCGTTTTGCGG 262392 28 100.0 33 ............................ TTCCGCTGGCGATTACTTCATATTTAGCCATGA 262331 28 100.0 33 ............................ CACCCGTCCAGAAAATGGATGCGATTATCAAGG 262270 28 100.0 33 ............................ TAAATGCAACGAATGGTTTACAATGGATATTGA 262209 28 100.0 33 ............................ CGGCCCCATATAACGACGAATCTCGTTAGAAGC 262148 28 100.0 33 ............................ TTTAAAAGGTGTTTTATTCTCAAGCCTTGACTA 262087 28 100.0 33 ............................ TAAGGTGGTGGCTGAGCGCTCTGATAAAGGCAG 262026 28 100.0 33 ............................ CAATAACAGACTCATCGAGCGGCAGCGTCGGGA 261965 28 100.0 33 ............................ TGCGCTGACTGGCGAAGCACTGCGTGAAACCTA 261904 28 100.0 33 ............................ TCCAGCCCTGAAAGATACTGTTTCATCATGCGC 261843 28 100.0 33 ............................ CCTCTCCGTCAGCCGGAGTTGTGTTTATTTCGT 261782 28 100.0 33 ............................ TTCGCCGGGATTTCTCGGGCCGAAGCAAGGTGT 261721 28 100.0 33 ............................ CGGCTTTTGATGCTTTGTCTACTGATTGTTGTG 261660 28 100.0 33 ............................ TATCCACCAAGCCAAAGATTGTGGCTCGATGAA 261599 28 100.0 33 ............................ TGCGCAGGCTGATGCGCAGTGGGACGTGGCTGA 261538 28 100.0 33 ............................ TCATTCAGGTCGTTAGACGGGACTGGCTTGTTA 261477 28 100.0 33 ............................ TCCTTCTGATAGTTTGTTTCAACGGCAAACATT 261416 28 100.0 33 ............................ TGATACTGATGAGTCTGAAATTTACATCACATT 261355 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 261294 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 261233 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 261172 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 261111 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 261050 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 260989 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 260928 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 260867 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 260806 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 260745 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 272028-271695 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKUM01000002.1 Klebsiella pneumoniae strain AS012414 AS012414_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 272027 28 100.0 33 ............................ CAAGATAAGCCAGAGGATCGGCACACTTAGGAG 271966 28 100.0 33 ............................ CAAAGCAGGTTGTATTTAACCAACGCATCATCG 271905 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 271844 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 271783 28 96.4 33 .............G.............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 271722 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //