Array 1 1680-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHN01000004.1 Jonesia quinghaiensis DSM 15701 G538DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1679 28 100.0 33 ............................ CACAGTAACAACCAGCGTCCATTGGACAGCAAT 1618 28 100.0 33 ............................ CCATGAGTGACTTCATTGACCACATGGAAACAG 1557 28 100.0 33 ............................ CCGAAACCACCTTGCGGTCGGCAATGACCTGGG 1496 28 100.0 33 ............................ CGTTGCCCTTGTCAGCAAGACAACAACCACACG 1435 28 100.0 33 ............................ CTCTCTCCTTCGAGAAACCCAAGTCTCGAAAGA 1374 28 100.0 33 ............................ CTGGTTACACACCGTTGACGTGCGGCAAAGCGC 1313 28 100.0 33 ............................ CTCCGGCGCTCTCTAAGCCTGGTGCTGGGGCGG 1252 28 100.0 33 ............................ CCGGTATTATAGATTTCCGTTTTTCTTATAATG 1191 28 100.0 33 ............................ CAAACGATCTTTAACGACCTGCAACCGGTATGC 1130 28 100.0 33 ............................ CACGCCGGGTTTCTGGGGCGTTGGCGACTATGT 1069 28 100.0 33 ............................ CGCCGTATACATGGTGCCGAGGTTAGGAGTACA 1008 28 100.0 33 ............................ CAGCACTACTCCAGTGGTCGCCATAGCCCCCAG 947 28 100.0 33 ............................ CGGTTCTTTCACGGTCGCAGACATACCAGATGG 886 28 100.0 33 ............................ CCCATGGAAAATCAGATGAAAAGAAACCCACAT 825 28 100.0 33 ............................ CGCCTATGAGCGCTTGAATCACAGGGGCGACAG 764 28 100.0 33 ............................ CACCACTGGACGTCGCATGCTAAACAGGTTGTC 703 28 100.0 33 ............................ CCGGTTTAACTCGGTGATCAGCTGGATCAGAGG 642 28 100.0 33 ............................ TGGTATATGGGACTCTCTGAGGCAGGCGCGGCG 581 28 100.0 33 ............................ TGCTTGTTTTTGCCTACTCCTGGCAAACTTCAA 520 28 100.0 33 ............................ CCCCGAACGGCAAACAACGAAACGCCGCCCACC 459 28 100.0 33 ............................ AATGAGGGTAACCCATTCCCATTGCCCTGCGTC 398 28 100.0 33 ............................ TACTCGACGCTGTGGGCACAAGTGATTCGGCCC 337 28 100.0 33 ............................ CTGGACAGAGTTGACCTGGGCATAGTCGTCATA 276 28 100.0 33 ............................ CGACGGTTGCGTCGTTGAAGGCGGTTTCCCAGT 215 28 100.0 33 ............................ CCTGTCGGGTGGGTTTAAGCTCACGGATGCTTT 154 28 100.0 33 ............................ CCGGTCCTCAAGGCGATCCAACCGCGCCTTCGC 93 28 100.0 33 ............................ TTCGCGGCACCTGCCCGCAAACGCACCCCAATA 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 33 ATGCTCCCCGCACTCGCGGGGATGAGCC # Left flank : CCCCATAGGCAACCGTGCAGCAGGCGTCAATTATGGATGGGACTAACCATGACGGTCATCGTACTGACTGCAGTTCCACAATCACTGAGAGGGCAACTCACACGGTGGCTCCTCGAAGTGTCAGCTGGCGTTTTTGTAGGAAAAGTTTCCGCACGGGTCCGCGAGCTATTGTGGGCCCGAGTCAAAGAGCACATCGGTACGGGCCGCGCCCTCATGGTGTGGCAAGCCCGAACCGAGCAAGGCCTCGATTTTCTGACACACAACCATGACTGGCAACCAACAGACTTTGAGGGTGTCACGTTGATGCTCCGCCCACGCAAAGACGAAAGTTCCTCACCATCACAGGCATCGGGGTGGAGCGCAACGACTCAACGCCGGCGGTACGGACAGAAACCCACCTAGCACGATGGCGCGATACTTTGTGAGGTCGGGCGACTATTGTCCCGCTACAATCGAAGGAAGAACGACTTGACGGCCAGTATTTCTGCTGGTCGTCAAGT # Right flank : CCTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-2399 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHN01000012.1 Jonesia quinghaiensis DSM 15701 G538DRAFT_scaffold00008.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 7 28 100.0 33 ............................ CGACTTGGATTGCTTCGTAGTTGCGTGGCATGC 68 28 100.0 33 ............................ CCATCGAGATTGCTTCGTAGTTGCGTGGCATGC 129 28 100.0 33 ............................ CCATCGAGCACCCAGCGGTCACCAAAGAGGTGA 190 28 100.0 33 ............................ CATTGATAGTCAGATTTCCACCAGCGGTCAGGA 251 28 100.0 33 ............................ CCAGACCACCCAGGCCAGCACCAAGGATATTGA 312 28 100.0 33 ............................ CCGGGTCAGCACAGGCAAAACGTTGCGCTTGTA 373 28 100.0 33 ............................ CTTTTTTTTATCCTTATGTTCTTTTGTCGTTGA 434 28 100.0 33 ............................ GGAGCTGCGCAACCTGGCGAAAGCCGAATTGCC 495 28 100.0 33 ............................ CCTCACCAGCCGACCACTCCTGCGGGGCCTCAT 556 28 100.0 33 ............................ CGACTTGGATTGCTTCCTAGTTGCGTGGCTTGC 617 28 100.0 33 ............................ TGGCGAAGCCCATCGTGCCGTACATGACGGAGT 678 28 100.0 33 ............................ CCCCGTGGACGTTGGTGAACCAGCGACACCTGA 739 28 100.0 33 ............................ CTAACGGCGCGCCTGTTTGCTAAAAACCAGACC 800 28 100.0 33 ............................ CAAGCAGAAGGGGGCGACACTCGAGAGGGATGT 861 28 100.0 33 ............................ GTCGCCGCACCGAAAGACGCACCCACCGTTGAA 922 28 100.0 33 ............................ CGACACTAAGAAGATGTGGCTAGCCATTATTGA 983 28 100.0 33 ............................ CCGGGTCAGCACAGGCAAAACGTTGCGCTGGAA 1044 28 100.0 33 ............................ CTTCACTCAATCCATCAGTACCCGTGGCGCGAG 1105 28 100.0 18 ............................ CGAGTNNNNNNNNNNTGT Deletion [1151] 1151 28 100.0 33 ............................ CTGCATCTGGTGAGCATCCTCTACAGCGCGCAA 1212 28 100.0 33 ............................ CAATGGAGAACACCCACGTTGCGGCCCGCTCGA 1273 28 100.0 33 ............................ CTCGCCCGCCGCGTGTGCGCTTCTTGGCGAAAC 1334 28 100.0 33 ............................ TAATCACAACGCCCGGCGGTAAATCAAGAAGAT 1395 28 100.0 33 ............................ CGCCGCATTAGATGGGTGTTTAAGTGCCATTAG 1456 28 100.0 33 ............................ CCAGCTTCGGCGAGATGGGCGCAATCTTCAACA 1517 28 100.0 33 ............................ CAACTGGTTCCCGGTAGTCCTTCTGTTTGGCTG 1578 28 100.0 33 ............................ CGAAATCAAAACCGCACTACTCGCCCTCGCCGC 1639 28 100.0 33 ............................ CCGAGTCGTAAACAATGTTGCCCGCCCGCAAGT 1700 28 100.0 33 ............................ CCAGGTCGGATTCGCCGCTTTAAGGTCATCCCA 1761 28 100.0 33 ............................ CCAATCCAAGGGCTGAGATACCCGGAAGGCACC 1822 28 100.0 33 ............................ CCATGCTCACCTGCACAATCACAATCTGGCTAC 1883 28 100.0 33 ............................ CGCCAAGCAAATCGCATTCATGGACGCGCACGC 1944 28 100.0 33 ............................ CGGGCAAAACTACGCCGCGAGCGTCACCATCAA 2005 28 100.0 33 ............................ CTTCTTGATTACACGTGCCGAGAACTCCGGTGA 2066 28 100.0 33 ............................ CCCCGATTACTCTGCCGGCGGTGTGGTCCGCGC 2127 28 100.0 34 ............................ CCCCCGTCGACCTTGCGCATGATTCTGACACTGA 2189 28 96.4 33 .........................A.. CCTTGGGATCACACTGGGGGCATTTGGTTTTCT 2250 28 100.0 33 ............................ CATGACCGGCTACATCAAGCGCCAAGTGCCACT 2311 28 92.9 34 .........................AA. CCATCTGACTTGGTTTCAAGAACTACTTCAAATT 2373 27 71.4 0 G..T..........A..A...-.T.T.T | ========== ====== ====== ====== ============================ ================================== ================== 40 28 99.0 33 ATGCTCCCCGCACTCGCGGGGATGAGCC # Left flank : GATGCTA # Right flank : TCGCTAGTGCGAACCGCATCCTGCTCATTGCGCCGTTATGGAAGCTGGGCAGGGTGCGGCAACTTTCCTTCACGCAAACGAAGGGGAGTGCGCTGTCAGGCTTGCTGCGGCCACTATCCCTGGAGAACATTAATCGCTCCTGTATTTCGCGAAGGTACTCCCCGAATCTGGGCACGGTGAAAGCGAGAACGCTAGGTTCCGGTGAGAACAGAATCCCCTTCCCTAAGAGCGACTCGCGTACTGAAGAGATCCCGCGAACGTCCTTCTTCCCAAGCCGTGAGGCGTACAGGCTTTCACGGATATAAGTTCGTGTTTTCTTAGCACAACCGGTAGCCGCTGATCATCTCGACAGGGGGTTACCCCTGCGATTCAGAGGGACGCTTACTTTCCAGCTCGATCCCACTAGACTCCTTCTAAGGTCTTCTAAGGTCTTCTAAGGTCTTCTCACGATGCCCGCTTCTCAAGCCTGCTCGACTTCGTTATTGGGATCCCCCCGTTTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCACTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //