Array 1 27842-28169 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHR01000117.1 Gilliamella apicola strain Occ4-3 Gilliamella_apicola_Occ4-3_contig92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27842 28 100.0 32 ............................ GTACGCTTCATATTCGATGTACAGACAATCAT 27902 28 100.0 32 ............................ GCCGTATGTTGCTGTTTTTTGCTCCCAGCGAC 27962 28 100.0 32 ............................ GGCATCCGAACCTTTTCTAACAAAGTTGACGA 28022 28 100.0 32 ............................ GTGGTCGCAAATTCATGTTATCGAGTTGCCAG 28082 28 100.0 32 ............................ AAAGCCGAAAACAAGGAACTTGGGCAAAACTC 28142 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : ACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGTCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTATTAGATGTCATATTTTTCAAAATTCCTAAATAAAAAATAGGTGCTGCCTAATTAGAAAGTAACTAATTTTTACTTTCATATTAGTCATTTTATAGCTACCTGTTATAGGTGCTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGCGTTTATTAAAAACTCAGCCAATGGGTATTTTGAACTTTAAGGCTGGAAAATCTTAAAAAATAACAAAGCAACAAAATCTAAAAACAAAAACCCTTTTTTTAGCTATATTTTAAAATTCAATAAAATCAATAAATTAAATTCATCTCAAAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : ATGCGCTTAAAAATTACGCATTTTAATATAAAACTTCACCGCCGCATAGGCGGTCTTTTGTATAAAAATAGAAATTTCTGTATAACTGGTTGATTTTAATGAAAATAAAAAATTAAATAAAATCAATGCTCTACCTGAACGATTTTGTGGGCGTAATACATCTTATAACATGGTAAGGATTATATGTTCATTGGTTGTTAGGTAATTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATTATTTCCACAAAAGTTAAGACTTACAAAACCTAACACCGTATTCTAATTAAAAAATTGCATAAAAAACTAGCCAAGTTTTTTTAAAATGGCTATACTTTAACACCTTAAAGGAATAGATTATTAAACAATCAAATAAACATAAAAATTAAAATAAATCATTAATTTACTTGACAGGTGAACCGTAATGCATTATCATTTTAAACACCAAACACCAAACACCAACACTGGCAAACCTATGTCTTAAATTTATCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13568-14015 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHR01000021.1 Gilliamella apicola strain Occ4-3 Gilliamella_apicola_Occ4-3_contig117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13568 28 100.0 32 ............................ ATTACGTCATCAGAGTACAAAACTAGATTAAT 13628 28 100.0 32 ............................ TTGCTATGCAGACCCTGACGAAATCATTATCG 13688 28 100.0 32 ............................ AGTAGAGCGCCTAATTCTTGCTCCATCTGGCG 13748 28 100.0 32 ............................ TAAAAAAAACTAAAAAAATCGGGTTAGCGTTA 13808 28 100.0 32 ............................ CACAACATAAACATTTGTATAGTACAAAAACC 13868 28 100.0 32 ............................ ATAAATTCACCTTTGCTTCCCTTTTTTATCGG 13928 28 100.0 32 ............................ TAAAGCGATTGATGATTCAGTTTTAGATAGCA 13988 28 92.9 0 ...C.............T.......... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : TGATATTTAATTAACCAAAGTGGACGATTTTTAGGGTTATGCTGGTAAAACCAATCCAATCGACTTTCAACAGAAACAGGCACTGTATCGGCAGTAACTTGGTGACCAGCAATTGTTGAATTATAAACATCAACAATAAATGATAAATCTTCTAATGTAGCATCGTGGTAAGTAATCATGTTTTTTTGCTTTAAGTGGTTTAAAGTGAAATTATTGTAATTTTATTATTGTTTATTGGCAATAAAGCATATTTTTTATAGTGAGAAAAATAATGTATAGTAATATTTCACATTTAAAATAAAATCAATTCACTAGATGGATTTTTTGAAAATACAATTTAAAAATTGCCTCAAAATATAAAATTTAGCTAACCCTTTTTTTTAACAATAAATTAAAATCAATAAAAACAAAAGGTTAATAGTGTCTTATAAAAAAGGGTTTTTGACAGAAAAAATCCTGTTTGCCTTTTGCTAAATGGAATTATAGTATATTGGCTTCTA # Right flank : AAATAACACATTTAGAATTACTAACTAAGCCAGCCTTAACGCTGAGTAATCGGTTTTAACATAACCACAAGAATAAAAAACAACCGAATCAATTAGAAAAAAGGTAAGAAAAGGGCGTTTTGAGGGGTAAAAACTAGCAAAAAACTTTGTTTTTTGCTGAAGTTTAAGCCAAGAGCCTCATTCCCGCATTGTAATGAGGAGGTGTTTGAGCAAGATCACTACGGCAAACAAGAAAATCCAATGTGGTAGTTTAGACCTTTACAAAAGTTTAGAAAAGTTTACAAAAAAGCTTACAAAAAAGTTGCGTTAATTTTTTGGTGATTTTATACTTTTTAATAATGTACTGAGTTAGTTTTTGTACAGGGAGATCAAAACAAGATCAAAAAAACAGAAAGTGAAATAAAACAGTAAAATAGACTGACAAGGAATTCCAGATGCCTTATAATTTTTCACAGTCCACCTGGCCAAACTATAACTTAAACATAGCCAATAGCGAGTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 50955-50507 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHR01000003.1 Gilliamella apicola strain Occ4-3 Gilliamella_apicola_Occ4-3_contig100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 50954 29 96.6 31 ............................G CCAGTTAAACTTTGTGCTAATAACTACCTCT 50894 29 96.6 31 ............................G ATGAGGCGCCTCAGCTTAGTGCAGAATTAAT 50834 29 100.0 31 ............................. TATCAACTGCTTTAATTCTTCTGTAGTATCC 50774 29 100.0 31 ............................. CACCGTTCCAGCTATCAAATTCGGAAGTTGG 50714 29 96.6 31 ............................A AATAAATATTATTATTATCAAATCTAGCTAG 50654 29 96.6 31 ............................A ATCGGGCCAAGTCGTTTAATCGCTCTTGCTC 50594 29 100.0 31 ............................. ACTCAGTTAAGAGCATTAAATAGTTAATTTT 50534 28 96.6 0 ......................-...... | ========== ====== ====== ====== ============================= =============================== ================== 8 29 97.9 31 GTTTACCGCCGCATAGGCGGTTTAGAAAT # Left flank : CTTATTATTTAATGGTTGTAGCATTAGTGGGTTTACTTACAGGCATAAAAATGAAAGAAACCGCAAACCGTCCACTCCGCGGCGCAACGCCTGCAGCATCAGACAGGTCAGAGGCAAAAGAAATATTATCAGATCACTTTGACTCAATAGAACAAAGAGTCGAAGATATAGAACAGCAGATCGAAACATTACAACAACAGCGTCAGAATTTAGTCGATCAACATCCTAAGTTAGATTGATTTTTTTATTTTTTGGGTTTTGTATATTTTGTTTAACATACAAAACCCAAATTTAATAAAATCAAAACGATACATAAGTAATTTTTAACGATAAAATTGACACATCATATAAATAGCTAAAACACTGCCAACCCTTTTTTTTATTAATAAATAAAAGTAAATAAAAACAAAGTATTATAAAACCGCTATAAAAAAGGGTTTTTGAAAACAGAAATCCTATTTGCCTTTTGCTAAACAGGGTTTATAGTATATCGGTTTCTA # Right flank : TCTGGCATTATTATTTTTAACAGCATGACGTTCACAGCTATATAACAGCTTGATTTTATTCAAAATTATTAAGTTAAAAAATAAAATCAATATTCTACCTGATTGATTTTATATAAAAATGTACCGATAATTAAGTGCGCTAAACAAGAGCGATAAATATGTGTAATTTTGGCACAATGTAAAAAATAAAAGAGTTTGAAAGTTTACTGTGAAAAAACTATTTGCACATTAACTTACTATGATATTGTCGACGATATTCGGTTGGTGTTCGTTCTGTCTTTTTTTTAAAAATCCGACAAAAATAATTACTATCTTTAAACCCCGATGCTAGAGCAATTTCTTTTATATTTAGATCATAATCCTTTAGTAGCGATTTTGCATATTCTAAGCGAATATGATTTAGATATTCATTTAACCCTATTTTTCCCTCGCTTTGAAATAGATGTGATAAGTAATTGGGTGAAATGTAAAACATATTAGCTAAAAAGTCGCGTGTAATA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48301-48688 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHR01000055.1 Gilliamella apicola strain Occ4-3 Gilliamella_apicola_Occ4-3_contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48301 28 96.4 32 ..C......................... ACGTTACCTAAGTTTTTTATATAGACATTATT 48361 28 100.0 32 ............................ AAATCCAGTTGACGACGAACACGCTATTGTGC 48421 28 100.0 32 ............................ AAGCTCTATCAGCAAAAATAAAAATGACGCCA 48481 28 100.0 32 ............................ TGTTCGTTTATTTTTAACGACTCTTGCATATC 48541 28 100.0 32 ............................ TCACGATATTCTTCCTTTGTCATTGCCAACAA 48601 28 100.0 32 ............................ AAGGGTAGTTAGAGGATCAAGATTAGGAGACC 48661 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 CTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCGATAAGTGATTATGCTTTATTGATGCCTATCACAACAGTACCGGCAACGATAAAAGGCTATTTGCATTTGAGTCGTGTTAATCCTAAAGGTCAGAGTGCGTTAAGACGTGCCGAAAAAAGATTAACAGCACAAGGTAAATGGACACCTGAAGTGAAAAATAAAATGGTTGAAAAATGGGGAAGCGTTCATTTGCAATACCCACATCTTCATTTGAATAGTAAAAGTACAGGTCAAAGATTTATTTTGTGGTTAAAACAAGAAAAATGCCCAGAGCCAGTGCAAGGCACATTTAATAGCTATGGATTAAGCCAAACAGCCACTGTTCCTGATTTTTAAATCATTAACCCTTTTTTTGGGGATAATTTTAACATATTGATTATTATTGATATTAAAATAGACTCAAAAAAAGGGTAAAAATTGGGAAAAGTGCAGTATGCTCTTTTACAATAAGGTCCTATTGAGATAAAATTCTA # Right flank : AATGTAAAGTTAAACGTGCATCAATAGTAGACACTTCAATATCGAGTAGGTGGTCTTTTTTGTATAAAAATAGAAATTTCTGTATAACTGGTTGATTTTAATAAAAATAAAAAATTAAATAAAATCAATACTCTACCTGAACGATTTTATGGGCGTAATACATCCCATAACATGGTAAGGATTATATGTTCATTGGTTGTTAGGTAATTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATGATATTCACAAAAGTTAAGGCTTACAAAACCTAACACCGTATTCTAATTAAAAAATTGCATAAAAAACTAGCCAAGTTTTTTTAAAATGGCTATACTTTAACACCTTAAAGGAATAGTTTATTAAACAATCAAATAAACATAAAAATTAAAATAAATCATTAATTTACTTGACAGGTGAACCGTAATGCATTATCATTTTAGACACCAGACACCAGACACCAGACATGGCAAACCTATGTCTTAAATTTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13245-13748 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHR01000096.1 Gilliamella apicola strain Occ4-3 Gilliamella_apicola_Occ4-3_contig73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13245 28 100.0 32 ............................ TTATTTATCAGGATTTATAGTCTACATACTGC 13305 28 100.0 32 ............................ AATCTAAAATTAGCAAGTTGAAAATCGGTATT 13365 28 100.0 32 ............................ GTCGATCACTATCGTTCTGCGCCGACTTTTAA 13425 28 100.0 28 ............................ ACTCAGTCCTTTCCCTAGTATTGACCAT 13481 28 100.0 32 ............................ GTTTTCAATTAACATTATCAAAGTCAAGCAAA 13541 28 100.0 32 ............................ TCGTTCGTATTTTTCGTAACTTTCTGACGAGT 13601 28 96.4 32 .................C.......... AAGGAGCTTAATTGCGTTGTTGTTATGTTAAC 13661 28 96.4 32 .................C.......... AATATGTTTCTGAATGTCCCTCGCCTGGCTAG 13721 28 78.6 0 .C.......T.........CCA..T... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTTACCGCCGAGTAGGTGGTTTAGAAA # Left flank : CATCCAATAGCTCTTCTGAAAGCCCATCGGTTTTATAATTATGAAATTGATAGCTTACATGATGATCATCAAGCCAAGTAAAAGCTTTTTTCATTGTGTTGCAGTTTTTGATACCGTAGATGATATACATAGTAGGTGATCCAACATTGAAAATAATAGCAAAGATTATAACAGTTATCGGCTTGAAGCGGCAAACTAAAGGGATTTATTTGTATTAATTCATATTAATACTCATATTTAATCTTAGTTGTTAAAGCCAAATGGTTATTAGTGAAAGTTTGAAAATTTTAAATAATTTGGATGGTGAGTTAAGAAATGAATTTTTGAACAGATAATTTCACTCATTTTAAAAAGATCAAACTATTGCTAACCCTTTTTTTTAACAATAAATAAAATCAAATAAAAACAACACACTAAAAAAGCTCTAAAAAAAAGGGTTTTCAAAAGCAAAAATCCTATTTGTCTTTTGCGAAACAAGGTTTATATTATATCGGTTTCTA # Right flank : ATTAAAAAAGCCCTCAGACGAGAGCAATAGGTGTCTACTGACAGAATGGCTGGCTATGGTTATTAGCTGTGTTCAAAAATTTTATAGAACACTTAAGCTAGTCATTAATAATCCATTATCAATAACATAAAATAAATATTAATCAATTAATTACAACATTTTTCAACAAAGTAATGCATAATTCGATTATCGGCGGTTAGTTCGGGGTGAAATGAGCAAACCAAAATATTATCTTGCTGTGCCATCACACAATGATTATCAATAAAAGCTAGCTGATTGACTTGCTCACCGGCTTTGGCAATATAAGGCGCACGAATAAATACTGCTGGAATTTGCTCACCAATATTTGGTATCTCTAACATTGTCTCAAAGCTGTTAATTTGTCGACCAAAACCATTGCGTTCAACGCAAATATCCATCAAATCTAATAATTTGACCTCGTTATGAGTTGTCGTTTTGCCACAAAGCACTAGCCCAGCACAAGTACCTAAAATTCCTTT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAGTAGGTGGTTTAGAAA # Alternate repeat : GTTTACCGCCGAGTAGGCGGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //