Array 1 4993-5286 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZQ01000173.1 Helicobacter cinaedi strain P16D1106 entry173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4993 36 97.2 31 A................................... TGGTATAATATAAAGGGTGTAGCGAAATACT 5060 36 100.0 30 .................................... ATGACAAGTCTATACCCGTTTTTATACTCG 5126 36 100.0 30 .................................... ATAATTGTAGTTTGCTAGTAGAAAATTATA 5192 36 100.0 30 .................................... TTAAATCCCATTGCTCTGGGTAATGCTTGT 5258 29 80.6 0 .............................------- | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 95.6 30 GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Left flank : AGCGAAAACAATAAAAGTTTTTTATCCATACTCATAGAAGAAGGACTCAAAGATTCTAGCTCTCTCCTAAAATCACTAGATAAAATATCATTAACTTTTAGCAGTGTATTGCCCAACAAATTGCACTTATCTTCAAATGTTTTATTCTTAATCTCGCTCATTGTTAGCCCCTTTTTGTTTTTGAGATTCAATCAATCCTTTGCCTTTTTCAAGTCCTTTGTTTGTCAGCTCACTTGTTTTTTCTTTAACCTTATCTAGCATTCTGCTTTTTTTCAATGGCTTCTTTTGCTTCAATGCCCTTTTCTTTCAATTTAGAAAACGCAGAGCCAAATGAAAAGCCATTTGTTGTTTGCTTTTGATTTTCATCAGCATAACTTTTAAAGTCATTTAGGGCATTAAAATTCTGCTTTGACTCAACCACACTCTGTGAAGTGTTACTATCGCCATCTTGTGTCTCTAGCTCTGCCATTATTCGTATCCAATTGGCTTCAATCTCACTA # Right flank : | # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 174-473 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZQ01000193.1 Helicobacter cinaedi strain P16D1106 entry193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 174 37 100.0 29 ..................................... CATCTTTTGTGGCTGCCTTTGAGCTGACA 240 37 100.0 29 ..................................... CAGCATTCACACCGCCCACGAACACATCT 306 37 97.3 29 T.................................... TCAATCGTTTGCGTCCTAAGTTTGAAAGC 372 37 100.0 29 ..................................... TACACGCTCACAGCCCATAAGCTAGATTC 438 35 86.5 0 ....................--.A.........T.T. | T [468] ========== ====== ====== ====== ===================================== ============================= ================== 5 37 96.8 29 AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : TCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCA # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAATACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 59-360 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZQ01000199.1 Helicobacter cinaedi strain P16D1106 entry199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 59 37 100.0 29 ..................................... GGAAAGATTTACCTCTATGGAAAATCGTA 125 37 100.0 30 ..................................... TATCACACAAGAGGAAGCATTACAAGAACT 192 37 100.0 29 ..................................... AAAAATCCTCCTATTATTCCTAAAGTTAG 258 37 100.0 29 ..................................... TTTATGATTTTGTATTCCACATAGCAGCA 324 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================== ================== 5 37 99.5 30 GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATT # Left flank : CCCTTCTTAAACTTCTATATGCTAGAATTTAAATCCCATTGCTCTGGGTAATGCTTGTG # Right flank : AGGCTCTCTGTTGGTGCCTATAGATAGGGATTTCAAAGGATTTTAAGCTGGAAATTACCTGAAATCCTTTATAATTCGCGACATAGAAGTTTAAGAAGGGACTAAAATAAGGGAGTAAGGGGTCTTCCGCAGGGTAAATCATATCCCTATCAAAACCCTAGAATTCAAATAGGCTTGGTTGCCTATTTTTGATTTTTTGTTTTGGTTGTGTAGTAGTTGTATTCAATTCTTCTTGTTTTTGATACTCCATACCATAGCGGTAATCACCCGCATTTTCGTCAAAGTCAAATAGCACAAGATTTTTATCTTCATTAACATTCTCATTAAATGATGGGTTTCCTAATAATATTTCTATATTGTCGAATTGTCTTTCTGTGATGATAAGTGCGCGGACATTACCATAAGGTGGAAGCACCTTTTTTACAACATTTAGAGAGCTTTTTGCCGAGCTTAACCCTTTGCATATTTTCATATACACGCTAAATTGCATCATAAAAAAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //