Array 1 1237-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSNR010000028.1 Hydrogenoanaerobacterium saccharovorans strain An564 An564_contig-110_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1236 32 100.0 35 ................................ ATCATGAGGAACTACATAATGCATCCCATATCCCC 1169 32 100.0 35 ................................ TGGTGATCTGCTCGCTGGGTCAGACGCTGGAACCG 1102 32 100.0 33 ................................ GTGGGTGACATAGACCTGACCGAGTATAATCGG 1037 32 100.0 34 ................................ TGATGCAAGTGATATTGATGCTATCTTTTACGAT 971 32 100.0 33 ................................ AAAGCTGATCTGCTGATTGATATACGCTGCCAC 906 32 100.0 33 ................................ GCTTACAGCCTGATCATCAGCGGTATTCATCTG 841 32 100.0 37 ................................ CAACTTTGGAAAGCCCCTCATTTACACCAGATGTTAG 772 32 100.0 33 ................................ GCCGCTGCTCTGGCTTCCGGCATTGTTGCCGGT 707 32 100.0 35 ................................ TCGCTGTGGTAAATCGTTGTATTGCGATGGGGGCC 640 32 100.0 34 ................................ TTGATCTTGAAGGGATCAACGCTGCCACCATCGG 574 32 100.0 35 ................................ CTCCCTGTCCTTGATCATCATCCAGCACATCACGC 507 32 100.0 35 ................................ CTCGGGCCGTGAAGCTGCTTTACAGTCAGTATAAG 440 32 100.0 36 ................................ CGGACTAGGGGGGATTGTATCCCCCCTTTTTTCTTA 372 32 100.0 32 ................................ GCCGGTCAACCATCAGCCCGCCGAACTTCCGG 308 32 100.0 34 ................................ CTCCCTGTCCTTAATCATCATCCAGCACATCACG 242 32 100.0 34 ................................ ACCTGATCGACGAGATGCACCTGGAATTTAATAG 176 32 100.0 35 ................................ TAAGTCTGCTGCCTTTATTAATGTTACTTCGACTG 109 32 100.0 37 ................................ GATTTCAGGTTTGGTTACCATAATATAGCCGGGAATG 40 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : CTGGGTGAT # Right flank : TGTTTAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 711-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSNR010000030.1 Hydrogenoanaerobacterium saccharovorans strain An564 An564_contig-110_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 710 32 100.0 35 ................................ ACCTGTTTCAGTCCAGACAGCTGATCAGTTTATAG 643 32 100.0 36 ................................ AGTTGACTTTATCTGATGATTTTTACTCTTGGGGTC 575 32 100.0 35 ................................ TGATAACAGTTTGCCTTCTGGTAATTTCTTGACTT 508 32 100.0 35 ................................ TTTGAATGGGGGTGAAACGTTTGAAGAGGCTGCTT 441 32 100.0 34 ................................ TGTGTGTATCGCTCTGATATACCATGATACCACC 375 32 100.0 34 ................................ AGGGAAATCACATACCAGCACAGTCACAGCACCT 309 32 100.0 34 ................................ CGGTCGATGGCTCGCCTAAGGTGGTCTCTTACAT 243 32 100.0 35 ................................ CCGTCTGGTGTGGCTTATAGTACGACTGCAAAAAA 176 32 100.0 36 ................................ CGGACGCCACTGCAACCCAGCTGATTGAGGCGTCCT 108 32 100.0 36 ................................ CGGCTGATCATTTGCATCTTTTCCAGCTGGGTGATA 40 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : CCATAGCT # Right flank : TATCATGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 710-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSNR010000031.1 Hydrogenoanaerobacterium saccharovorans strain An564 An564_contig-110_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 709 32 100.0 35 ................................ ACCTGTTTCAGTCCAGACAGCTGATCAGTTTATAG 642 32 100.0 35 ................................ ATCGCTGATGACGGTGAAGTCTATCACAGTTACAG 575 32 100.0 34 ................................ CTAACCGGGATACCTGTATTATCGACTTGCAGCA 509 32 100.0 34 ................................ GCCTGGTGGGCTGTCGGATGGTATACTGTGATAC 443 32 100.0 35 ................................ TTTCATCGGGAGTTGAAAATTTATAAACTATAAAC 376 32 100.0 34 ................................ CCACGGGTTTTCTCCGGTACTAACTGGACTTCCT 310 32 100.0 37 ................................ CCTTTACTAAGTGGGTTTACTCCCGGATCGCTGCTGT 241 32 100.0 35 ................................ ATCATTATAGGTGCTGCTTGTGCCACCTCCTTTAC 174 32 100.0 34 ................................ TGATCTGATTGCGGTTATTGATCGGTTGGCTATT 108 32 100.0 36 ................................ CGGCTGATCATTTGCATCTTTTCCAGCTGGGTGATA 40 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 100.0 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : CCATAGCT # Right flank : TATCATGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 236-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSNR010000056.1 Hydrogenoanaerobacterium saccharovorans strain An564 An564_contig-110_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 235 32 100.0 37 ................................ GATTTCAGGTTTGGTTACCATAATATAGCCGGGAATG 166 32 100.0 34 ................................ GTTTAATTAGTCCTGTTTCCCAGCCCCATAGCTG 100 32 100.0 35 ................................ ACCTGTTTCAGTCCAGACAGCTGATCAGTTTATAG 33 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 100.0 36 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : | # Right flank : TA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 31590-31029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSNR010000012.1 Hydrogenoanaerobacterium saccharovorans strain An564 An564_contig-110_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 31589 32 100.0 35 ................................ ATCATGAGGAACTACATAATGCATCCCATATCCCC 31522 32 100.0 36 ................................ CCCGACTGTTAGAGATTCAGGCCGAGGAAACATCAC 31454 32 100.0 34 ................................ AACACCCGACAATGACGCAAAGCGCTCTGAGCTT 31388 32 96.9 33 ...............................C CCGGGTCATATCCTCGGGAACAATGCTCACGAC 31323 32 96.9 34 ...............................C GTGAAATCCCTATGCTTAGATACAGACCAGAAAG 31257 32 93.8 35 ................A..............C CCTCATGCATTTCCCTCCCTGCGGTCTGGATGCCC 31190 31 93.8 33 ......-........................C GAGTCCACCATGGCAATGGTTGCCGTATCGTCG 31126 32 93.8 34 ..............A.A............... TTCAAATGCTCTTGTGGTTGTTCCTCGACCAATA 31060 32 93.8 0 ..............A..............G.. | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 96.6 34 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : CTGGGTGAT # Right flank : AAAGCAGGAAAGCCGGTGTAAATCCAGGAAAATGAGTCTCCGCATCACTGAATCATCAATCAGAGCATAGCAATGTATTTCCTTGCCTGCTCAATCAGCTCTTGCTGCTGTCGGCACTCTGCCTCCAACTGCTCCACCAGTTCCATGAGCACCTCCTTTTTACGACGGTCTGATGCTCCCATCAGCTCCAATATTCCTTTTCGGGTGAGCCCCAGCTTTTGATAAAAGCGAATCTGTCGGATCATTTGCTGTTCTGTTTCACCGTACAGCAGATGTCCATATTTGTTTTTCCCAGCCGAAGCTACCAATCCCAGCTTTTCATATCCCTGAAGTGTCCGTCGGGATATCCCTGTTTCAGCACAGATCTCACGCAATGTCTTTTGTTTCAATTTCATTCCCGCCATACCGTAAAACTGCACACTGTGTGCAGTCAAGAACTTTTCACGCAGAAATCTCATTTCGCAAAAGAATCTGAAAAATCTGCGAAGCAGGAAGGAAAA # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 163899-166056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSNR010000007.1 Hydrogenoanaerobacterium saccharovorans strain An564 An564_contig-110_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 163899 32 100.0 33 ................................ GCTGTTGCCCATGCGCGCCGCCGACTTTACAAA 163964 32 100.0 34 ................................ CCATATATCCGGTACAATGGGCGCATTGCATCAG 164030 32 100.0 35 ................................ TAATGGCTCTATAAGGCTCTACAATGCCCTTGTGC 164097 32 100.0 35 ................................ ATAGAGGTGGTAATAGATGAATAAAAAGCAAATTG 164164 32 100.0 36 ................................ AACCTGAGTGGTTGCAGTGGTAATAGTAGCGGTAGC 164232 32 100.0 33 ................................ AGGGCGCTTGTGGTTGATATGGGGGGGTATGCC 164297 32 100.0 34 ................................ AAGCCTTACACAGGCTGATAAAGCTCTGTTGAGA 164363 32 100.0 34 ................................ GTTGTTGTCAAGGTTTGCGGTGGTTATGTTGTTA 164429 32 100.0 37 ................................ TCGTTGTAGGTGTACTGTCGGCAGTAGATCGGCTCGC 164498 32 100.0 34 ................................ CGTATGAGTGCTACAGCTTCCGCGGCGCTGGAAT 164564 32 100.0 34 ................................ TTGTTTGTCTTGATTTGTACATGTTTTGAAGGTG 164630 32 100.0 37 ................................ TTTTGCCCCTGGTCGCTGTCTGGCTGTGTGCTGGTTG 164699 32 100.0 33 ................................ GGCTGCGTGCTGCTGGCTGCTCTCTCGTTCTGT 164764 32 100.0 35 ................................ TCTGGTGTATACTCTTTTTGTAAGCTACTTTGCTG 164831 32 100.0 35 ................................ GTATATGTTTGAAGGAGGTGATTGTTTGTCTCTGG 164898 32 100.0 33 ................................ TGGCTGATCGGCTGCGTGCTGCTGGCTATCTCG 164963 32 100.0 34 ................................ TTATTTTTGAGGTTGGGTCAGAGGGTGGACGGCT 165029 32 100.0 34 ................................ GATGACCCGGACGGCTGGCTCGGTGGTCTGATTG 165095 32 100.0 33 ................................ GTGATAGCTGCGCTTATATCGTCAGTCAGTACC 165160 32 100.0 34 ................................ TGCTTGGGCTTATCCTGTCAATCCTCCTTGGCAG 165226 32 100.0 35 ................................ TTGTTATGGTCTGCATGACAATAGTCTTGATGATG 165293 32 100.0 36 ................................ GGATTGTCCGTTTGTCCGCTGCGTACCTGATGACCC 165361 32 100.0 35 ................................ CTTTATCAGCTCGCCGGCGAAGCCGCTTCACATGC 165428 32 100.0 35 ................................ GGCTCTGACTTCTTTCTTTGATCTGATTTTTGATA 165495 32 100.0 33 ................................ TTTAGTGATCGGCTCGGCTTGCTGCTCTATCCC 165560 32 100.0 34 ................................ TTTTATCGTTTTAGCTCGATCGAGGCCTCTGGAA 165626 32 100.0 33 ................................ TTCACGGCTACTCTTGACCCTCGGAAGTATGAT 165691 32 100.0 34 ................................ GGCTGCGTGCTGTTGGCTGCTCTCTCGTTCTATG 165757 32 100.0 36 ................................ CGTATGTCCCCCCTGGCATCCGCTGCGTTGGCATCT 165825 32 100.0 34 ................................ CGTATGTCCCCCCTGGCATCCGCTGCGTTGGCAT 165891 32 100.0 33 ................................ CAAGATCTCATGGACTACGCTATGAACGAACGT 165956 32 100.0 37 ................................ GATTTCAGGTTTGGTTACCATAATATAGCCGGGAATG 166025 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : AGTCATATCCACCATTTTTATGGAAGTGAGAATATTATTATGCTGGTACTGATTACTTATGATGTCAATACAGAGGATCCTGCTGGGCGCAAACGTCTGCGTCAAATCGCCAGACAATGCACCAATTACGGACAGCGTGTTCAAAACTCTGTGTTTGAATGTCTGCTGGATACAGCCCAATGCAAACTTCTGCAAGCAAAATTGATATCGATTATGAATCCGGAAAAAGACAGTATGCGATTCTATTACCTCGGGAAACACTATGAACAAAAAATAGAGCACTTCGGATGCAAACCCTCTTATATGCCGGAAGATCCTCTGATTTTGTAGTGCGAAGCGTCAGCACACATCAATCGCCGGACGGTTCGCACCCTTGCAATGCGGTTTTTTCATCGCATTCCTGCTTTTATCATGGTTTATCACAAACTATTTTTTGACAGATTCCAGTATTTATATCAAATTCCGGCAAATTTTACATATCAAATTTGTCCAAATTTGCT # Right flank : GTTTAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //