Array 1 24333-25701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYDG010000012.1 Klebsiella pneumoniae strain MRSN410359 MRSN410359_contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24333 28 100.0 33 ............................ CAGACCTCCTCTTCTACCTTGACCGCCCTACAG 24394 28 100.0 33 ............................ TAAAAACCCCGCATTATGCGGGGTTCTCTTTAT 24455 28 100.0 33 ............................ GAGGAAACGGCAAAACTGGATCAGCTTATCCGC 24516 28 100.0 33 ............................ CGCAGCGCGCCGGGCGATCTCCGGCGTGCCCTC 24577 28 100.0 33 ............................ TGGCGCACGCACAAGGGCGGCGGTTAGATGGGC 24638 28 100.0 33 ............................ CAGCTTCGTGAAGAAGTACGCATCGTCCGGCAT 24699 28 100.0 33 ............................ CAGGTTGGCCATATAGGTCAGGAATGTGCCGCT 24760 28 100.0 33 ............................ TCACCAGGATTACTCGGTCCGGACGGCCAGACA 24821 28 100.0 33 ............................ CCCTACCCCGCGGCGCTGCAGGTAATACGCCTG 24882 28 100.0 33 ............................ CGGGCTTGACGCGGTGCATTTTGACGCGGACGC 24943 28 100.0 33 ............................ TTATGTGTGTGGCGCTGGGGAGGATTGATCCGG 25004 28 100.0 33 ............................ CACCGCGACCGAGGCCGTAAAATCGGCCGTGGG 25065 28 100.0 33 ............................ TGGGATCACCTGCAGGACCTGCGCGTCGTCGCC 25126 28 100.0 33 ............................ TCTGACGGGTCAGAATCTGATGCATCAGTTTTT 25187 28 100.0 33 ............................ ATCCTTCTCGCCTACCGGGCGGAAGCAAAAACG 25248 28 100.0 33 ............................ TGCAGATTTCAGCAGAGTTTCGCCGGGTGTTTC 25309 28 100.0 33 ............................ TGTTGAGCAGCGGGCTGTGTTACTCAACATGCT 25370 28 100.0 33 ............................ CTGGTGCCGGTCGCCACTGCTGCGTGTGATAGT 25431 28 100.0 34 ............................ CATGGTCACGAAGGAGGGGGCCGAGGGAGCAGTG 25493 28 100.0 33 ............................ TTTACAAGGACCGATGAATGAACCCCCTGATCG 25554 28 100.0 33 ............................ CAACTGCGACGCCTGCGAGCATTGCCGCTACTT 25615 27 92.9 33 ........A........-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGA 25675 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 23 28 98.9 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGCACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGTGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTATGGATTTTTCCGCAGCGTTAACTACGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGGCGCGGGCCGGGGAGGCGAGTAGGGTAGACCGGACCTGGTCAGCAGCAAGACAACGGTGGTGAGATGGGGACATACTTTTTCGTTTGATGAATGTGGTGCTGATGCGGAAACCCTGCGGAGTGCAATTGTCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CAACAAAACTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATCCATATTCATGTGTTATATTTGTTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCAACTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAACCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGCCATTGTCAGATTGTCGGGGAGATTGCTCGGGCGCTTATAGCGTTGTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34370-34831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYDG010000012.1 Klebsiella pneumoniae strain MRSN410359 MRSN410359_contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 34370 28 100.0 33 ............................ CTACGGGTCCCCGCTGGGCTCCGGCGGCAGCGT 34431 28 100.0 33 ............................ TAAGCGTTGATGCGGGAGAAGGTGAGCCGGGGA 34492 28 100.0 33 ............................ CGTAAAAGAGCGGATCGGCTCCTCCGTGCTGAT 34553 28 100.0 33 ............................ TGGTGTACGACACCCGCGATTTACCCGTCAGCC 34614 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 34675 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 34736 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTATCAGCGCTGGCATTCGTTCT 34805 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 8 28 98.2 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //