Array 1 7-278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFN01000058.1 Frankia torreyi strain CpI1 FF36_scaffold_57.58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. GTCACGGAGGCTGGGTATCGCCACCCGGCTCG 68 29 93.1 32 .......T....................G GAACGGCCCACGGAGTGACCCGGTCCCGACCC 129 28 93.1 32 ...........-................G GGCGGGGACATATCCCAGTGGTCGACCTCGGT 189 29 89.7 32 ...........CT...............A TGGGTCGTGCTTCACGCCCTCCACCCCGCGTC 250 29 93.1 0 ......T.....T................ | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : ATGCTGG # Right flank : CGTCATCTCCGTGCTCGACACCATCGGCCGGTAATTGTTCCCGCAAGTGCGGGAGTTCTGTATGTCGCAGGTTTCGTGCCTTGTCATTTTTGACTACACGGAAATATATCCTGTGGATGATGGGTCTTGGGGCGTTTTCTGCTTGTCTCTGGAATGCGATTGAGTGGAATCTTTGAGAGGGGTGTGTGTGGAGAGTTTGGCGCTGGGAGTGGTGTGGGGGAAGTCGGCGGAGAAGGGGGGTGGTTCGATGCATCTTCTGCTCGGGCATCTGCTGGATACGGCCGCAGTGGGGGAGCTGGTCTGGGATCGGTATCTGGCGCCGGTGATCCGGGAACGGCTCGACGCGGTCAGCGACGGGCAGGGGCGGGCATTGTTCGCGTTGGTGTGCGGGCTGCATGACGTCGGGAAGGCGACGCCGGCCTTTCAGATGAAGGACGACGGCCTGGCGGCACGGGTCCGAGCGGCGGGTTTCGACTGGAAGAGCGTGAGCCCGCAGCAGG # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12763-13339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFN01000058.1 Frankia torreyi strain CpI1 FF36_scaffold_57.58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12763 29 100.0 32 ............................. CCAGTGCACGGCGGTGCCCAGTACGTCCAACG 12824 29 100.0 32 ............................. CTGCGGGACACGATCCGAACCCGAATCGCCTA 12885 29 96.6 32 ............................G GACATGGGCTATATGGGAGCCGCACCGTCGGG 12946 29 100.0 32 ............................. GGCGTCGACGACCTCCGCCCACGTGGCGTCGT 13007 29 96.6 32 ............T................ ACGGGCGCCGCGACCTGGTCGCGCCAGAGCGA 13068 29 93.1 32 ..........T.................G GGCCTGCACTCCGGCAAGCGGGTCACCCTTCA 13129 29 89.7 32 ..........T.....T..........T. TGGACATCACCACCCTCCCCGGCGACGATCTG 13190 28 93.1 32 .....-.....................T. CGCTCCACAGAGTCATCGCGGTGCACCGGGCC 13250 29 86.2 32 .....AT.....G....A........... TCGTCCAGGAATGCGGGAAGATTGCCGAGCGT 13311 29 89.7 0 ............T.......A.......G | ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.5 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGT # Right flank : GGCGAACACTCGGCGGCCGGATCCGTCAGAGCGACGGGATACTCAGTGGTCCCGACGTCGGTGAGGTCCCGGTGCGTGGTGATGGCGGTGGTGCGCCTTGCCGGCGATCATCCCGACGATGATGAGGGGCCAGGGGAACCACATCGCGCCGTGCGTCAGGACCGGCAGAACGAGGAAAAGGGCGAGGATCGCGACCGGGATCACGGCATGCGGCGGACCGGCCAGGTCGAGCCCGTGCAGTCGATCGCGCAGGCCGGGACGCTGTGCCGGCGGCGCGGCGGGTTGCGGCCTGGGCTGCAGGTCCGCCGTGAGCGAGGCGAGCTCGTCGAGGGTGCGGGCCGCGTAGGCGTGGGCCAGCCGCTCATCCGCCTCGTCCAGGGTGAGCTGCCCGGTTCCCGCAGCCCAGGCAAGCCAGTCGGCGGTGCGCGTCCGGTCCGCGTCGCTGGCCCGTACAGCGCCGTCCGGTCCGTTCTTCGAGGTGCCGAGATCCCGTGCGTCGT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFN01000096.1 Frankia torreyi strain CpI1 FF36_scaffold_95.96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2 29 93.1 32 ............C...............C CTGTTCTGGGCCGCACGCGCCGCTGTGCTGGT 63 29 96.6 32 .....A....................... TGTGACGTCAACGAGTGCATCGCCCGCGATGC 124 29 96.6 33 ............................C CGCGGTGCTTCCCGGAACGGCAGCGCTTCCGTC 186 29 96.6 32 ............................C TCGCCCGGACCGGCCGGGGAACGAGCAGAAAT 247 29 100.0 31 ............................. CCTCAGGGCACTCGGGGCAGCCGCGAGGCGG 307 29 93.1 32 ..........T.................C CGGGATCCGTCTCACCGCCGTCCTGCACCGGG 368 29 100.0 32 ............................. CACATTGACACCGCGCTGGATAACGAGGTCAC 429 29 100.0 32 ............................. GACGGGGTGGACCTCTCCAAGGTCGAGGGGCT 490 29 100.0 31 ............................. TCCTCTTCATCATCCTTTCACCATCGGCGTC 550 29 79.3 33 .....T......C.......A..G...GC TGGGCTCGCCCGGCTCGTCTCGGAGCATCACAT 612 29 82.8 0 ........T..TC...........A...T | ========== ====== ====== ====== ============================= ================================= ================== 11 29 94.4 32 GTCGTCCCCGCCTGCGCGGGGATCTTCCG # Left flank : AG # Right flank : TTGCGGACAGCTGACCTGCGGTTCCGGATGAGGGACGGCGGGCACCTGGGAGTGCGGGTCGGCCTCGGGTAGACGTGGCATCTGATCGGTCGAGGGGTGTTGATGGTGGGCTGCGAATCGCATGGTTGGATAGTGAGCTCGATGGCCCTACTCGGGGGATGTGGTCCATGGATGACGCGTTGGCAGTGGTGTGGGGGAAGTCGAAGGCGCCAGAGTCGATGCACCTGTTGCTCGGGCATCTGCTCGACACTGCGGCTGTTGCGGAGCTTGTCTGGGATAATTTCCTCTCGCCCGTAGTACGGCGTTTTCTCGATGACTGTAGCCAGGGCCGAGGGCGGTCGCTGTTCGCTCTTCTGTGCGGACTGCATGATGTGGGTAAGGCGACCCCGGCGTTCCAGATGAAGGAAGCCGCGCTGGCCGACCAGGTCCGAGCCGCCGGTTTGGACTGGGGGACTCTTACCGTCGATCAGGGTCGGCGATGGCATCACGCGCGAGCAGGT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCTGCGCGGGGATCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 12959-13292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFN01000096.1 Frankia torreyi strain CpI1 FF36_scaffold_95.96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12959 29 96.6 32 ..................A.......... CACAACGGGATGCACTACTGGGGCGGGCCGAA 13020 29 100.0 32 ............................. ACCGGCGCCGCCAGCATCCCGTTCACGCTGGC 13081 29 100.0 32 ............................. ACGCCATCGTCCACGTCGCGTCGGCCCTGGAG 13142 29 93.1 32 .............A..............A CTCACCCGCTGTGACGTCGGCACGGAGCGCGC 13203 29 100.0 32 ............................. CGGAGCGTTGCAGCGACTGGCCGCGTCTGGGT 13264 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTCGTCCCCGCCCGCGCGGGGATCGTCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CACGATGCCGTCAACGGTCAGCGGGATCAGGTGGTCGTCCCCGCCCGCGGGGTCTGTTGCATTGGTGAAGTCCGTGGTCTCGGCGACTCCTACCCAGGGTGATCGATTCATGTGTCGGCGTGCCGTCCAGCCATCGGTTCCGGTCTCGGAGTTCGTCGGGTTCCGGTTCCCACCCGAGGTGATCGTCTTGGCTGTCCGCTGGTACCTGCGGTACAGCCTGTCCTACCGCGACGTCGAGGAGCTGCTCGCGGAACGCGGCATCACCGTCGATCACGTCACGATCTACCGCTGGGTCCAGCGGTTCACTCCGCTGCTCGTCGAGGCTGCCCGGCCGTGCCGACACAGCCCTGGAGACAGGTGGTTCGTCGACGAGACCCACGTCAAGGTCGCCGGCCGGTGGACCTCCCTGTACCGGGCGATCGACCAGATCGGGCAGGTCATCGACGTCCTCGCCGCCGAACGGCGTGACCTGGCCCCGACCCGACGGTTCTTCACCCGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCCGCGCGGGGATCGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 15548-15337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFN01000099.1 Frankia torreyi strain CpI1 FF36_scaffold_98.99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15547 28 100.0 33 ............................ TGCCACCGACCGCCTCTCTGCGCACGAAATGCA 15486 28 100.0 33 ............................ GGCTCATGGCTCATCATCGACGGGTACGAAAAG 15425 28 100.0 33 ............................ GCAACCGCGCCCCGTCGCGTACACGTCTGCGGG 15364 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : | # Right flank : ACTTGCTGACCTGCACTTTCTCACAGGTAGGCCATCCAAATTTATCAGTGCGGGCGGGACGCGAAGGCATCTTGACAGGCAGCCAATAATGATCAACTATTGGTCGCGGCCTCTCGCTTGCCGGTGGTACAGATTTTGAATGGTCAGGGTCTGGTTACGGGGGTTGCGGATCCAGGGTCAGGTCGGTCTGGCCGAGGAAACCGGTGATGAGGTCGGGTCGGTACTGGATGCGTTTGAGCAGGGTCTTGATCGTGATGGTGAGCTGGTCGACGGTGACGCGGGTGTGGTTGCCCAGGTCGCGTTTGACATGCGCCCAGACCCCTTCAGTCGGTTTGCCGCGGTGCAGGTCGAGTTGGACAGGGCGGCGCTGACGCGCCGATTATCAGTGGGGAGGGGTTGCTGCGGCTGGTCGAGCTGGTTGATCAGCTACGGGCCCGTGAGCGGTGTGAAGGCGGTGCGTTGTGGACGGCACCGGAACAGACGATCTCCCCGGATCCCGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //