Array 1 746729-745503 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGID01000001.1 Helicobacter fennelliae strain NCTC13101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 746728 36 100.0 30 .................................... TCAAGGGCAAGAAATATCTAGATTAAAAGC 746662 36 100.0 31 .................................... CAATAAATCACTTTCTAAGTGTTCCACAAAG 746595 36 100.0 30 .................................... ACAATTAGCGATAACGAAATGCGTTATATT 746529 36 100.0 30 .................................... TACTTTTTGTCTTAGTAGGAGGATTTTTCG 746463 36 100.0 31 .................................... CAATAAATCACTTTCTAAGTGTTCCACAAAG 746396 36 100.0 30 .................................... TTAATGAGCTTGCAAAACAAATCGGGCAGA 746330 36 100.0 30 .................................... CACTTAATCAAACAATCAGACATAGAGAAT 746264 36 100.0 31 .................................... AAAAATAAAGTGTAAAGTATGGCTTTTAAGA 746197 36 100.0 30 .................................... TTCGTGCCTATACTCATCGTAACGATCTTG 746131 36 100.0 28 .................................... GCCAGTCTTTCCAGAGCAAACGATAAGG 746067 36 100.0 30 .................................... CAAGATATTACACAAGACACAACACAAGAA 746001 36 100.0 30 .................................... ATACAAGACATTTACAATTTAACGCACATA 745935 36 100.0 30 .................................... ATAGAAATATCATCTCCGCTTAAAAATAAT 745869 36 100.0 30 .................................... AATAGAGACGAAATTGTTGTAGATCTAGAA 745803 36 100.0 30 .................................... TTTAACCTCTCTATTATTGAATTATCCGTT 745737 36 100.0 30 .................................... AAAGCGTGCATAATAATTGTGTAGCTAATA 745671 36 100.0 31 .................................... TAAAAATAGAATAGAATTGTAGATCTAGAAG 745604 36 100.0 30 .................................... TAAGAATATTGAGTTTAGAAAATAAAAAAT 745538 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 100.0 30 GTTTTAGTCCCTTCTTAAACTTCTATATGGTAGAAT # Left flank : GATTCTTCATTGCCAAACGCCCATATCATCGCCAATAAGAGTCTCGTTCCCCTCTTTTTCACTTATCCAATCCCATTCTTTAACATTCAAAGTGAACCATTTGCAATCAATAAGATTGTTATATACAAATATGCCTAAACACGCCAAGTCTTTATCATTGCCTTTGCAATGATAGGTGTGTTTATCTATCTTTATAAGTCCAGATTCTTTAGCCAATTCATCAATAATCTCATACATTCTATCTAAGTCGTATTTGTTTTCTTTTAGAATCTTTTCTTCATCTAATACAATTCTAGTGCCTAATAATGAGCGTCTTTGTGTGTGTTGTGTAGATACAGCTGTCATTTGAAACTCCTTTGATGTAAGAGATTTTTATCATTATAACATTTATTTGATATATATAATATAAGATAGATAAATATAGCAAAGTATATAATATTGTATGTTTTACTATAATATTATATATTATCTATGCCTTTTAATATGTTTTTTTCTTGCAT # Right flank : AGGCTCTCTGTTGGTGCCTATAGATAGGGATTTCAAAGGATTTTAAGCTAGAAATTACCTGAAATCCTTTATAATTCGCGACATAGAAGTTTAAGAAGGGACTAAAATAAGGGAGTAAGGGGTCTTCCGCAGGGTAAATCATATCCCTATCAAAACCCTAGAATTCAAATAGGCTTGGTTGCCTATTTTTAATTTTTTGTTTTGGTTGTGTAGTAGTTGTATTCAATTCTTCTTGTTTTTGATACTCCATACCATAGCGGTAATCACCCGCATTTTCGTCAAAGTCAAATAGCACAAGATTTTTATCTTCATTAACATTTTCATTAAATGATGGGTTTCCTAATAATATTTCTATATTGTCGAATTGTCTTTCTGTGATGATAAGTGCGCGGACATTACCATAAGGTGGAAGCACCTTTTTTACAACATTTAGAGAGCTTTTTGCCGAGCTTAACCCTTTGCATATTTTCATATACACGCTAAATTGCATCATAAAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAACTTCTATATGGTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //