Array 1 583194-582100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061471.1 Geobacillus zalihae strain SURF-114 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 583193 30 100.0 38 .............................. TTGTTATTGTGCAATTTGTTGTAATTCAGCAATGACAT 583125 30 100.0 36 .............................. TCCGCTTTGTATAGCGTTCCTTTTCGCCAATCTTCT 583059 30 100.0 38 .............................. TATTTTTACACATAAACGCCATATAAGCCCGTTCGCCA 582991 30 96.7 37 .....A........................ GTTTAGAATCTAAATATTCAGCTGCATCAGCTTCATC 582924 30 100.0 38 .............................. ATATAATCATCAGTGAAATCGTCACCCGCTAAATCCTT 582856 30 100.0 35 .............................. CAGGAGAAGTATTAGGAAAAACCAAAAACGAAATT G [582830] 582790 30 100.0 39 .............................. TCATAATCCTTCGCATAACGAGGTGTTCCGCACGCCGGG 582721 30 100.0 36 .............................. ACACGTTGCGCCCCCGTGCTAGGCTGGAAAGCCGGA 582655 30 100.0 36 .............................. ATCCACTTAGACCTATTTTGCCGATCATGCATCCAA 582589 30 100.0 36 .............................. GCTATACTGCCATTTAAACGTATATGTCCCCGGCGA 582523 28 93.3 36 ................--............ GAACGTAATGCATAAACAAAGTGTTTTTCTACACCA 582459 30 100.0 35 .............................. CCGTTAAGCCCACGCTTCACTTCGATACTGATTGG 582394 30 100.0 35 .............................. TCCCAGAAGGGGATATATACCGCTTGATCATTAAG 582329 30 100.0 35 .............................. ATTCATAAATTTCATCGATTGGAAAGAGTTCATAA 582264 30 100.0 36 .............................. CATTTTGACTAATAAATAAGCGTAGAAAGGTTCTTT 582198 30 100.0 39 .............................. AAAATCGTGTACCGATGGAACCCGTCAACGATGATGAAC 582129 30 90.0 0 ................C....A.C...... | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 98.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCTCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGGGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGAACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAAACAACACGGCTAAACGGTATTGACAGAATTTTTGAAACGTGTTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTACGCACATGGTTTGGG # Right flank : TAGAGGAACTGAAACTATTCCTCGCCTCAGCTGAACCGTTGCTGGGTTCCGCTTGTTTTACGGCTCCACATAGGAAAAGGACAAATGGCACATGCCAAAAAAACGCGGGGGGAAACAAGAAGGAATTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCCGGGAGGGAAAACGTGGCTAGGAAGCGAATCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGATGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTAAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 591478-591182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061471.1 Geobacillus zalihae strain SURF-114 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 591477 30 100.0 39 .............................. GTGGGTCCGGGATACACTCGATAGTGGCAGCTATCGGAG 591408 30 100.0 36 .............................. CGTCAAGAATTGCGTTTCCAATTGCTGTGTAACGAA 591342 30 100.0 36 .............................. AATCTGACCAATATTGAATAGCAAATTTTAATGCCT 591276 30 100.0 35 .............................. TACTCACTCGTACCGTTCCAATCGGACTGTTTCAG 591211 30 83.3 0 .C.........C..C..C..T......... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 96.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCGGCAACGCAATACTGTGCGCTATTGGGCAGCGTCCCCGCTGGTCTTGCCAAAGGCATTGCCGCGCTGCTCTTGTTTGATCATCCGGAAGACAGCGAAGCGGCCGAGCTCCAACAAACGATCCGACAACGCGGGGTCGAAGAGGCGCTTCGGCAATACGCCGGGCTCGAAAGTGCGCACCCGCTTGCGGCCGCGGTGAGGGAAGAGTACGAAAAAATGGCTGAAAAGAAAAGGGCATAATGATTTATGATGGCACACCGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGTCAAAATCCTACAGCCAACACTGCTGAACGATATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGG # Right flank : ACTGTGTAGTACAGCACAACTTTTTCTGTTCCCCATGCAGGATTTTCACCCCCTGTTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATCCACGAGCATATCGATTTCCGCCATTTGTCCTTTTTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGCGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAGCTGAAAGGGGAAGACGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2509950-2510641 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061471.1 Geobacillus zalihae strain SURF-114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2509950 30 100.0 36 .............................. AAAAGAATGAAGAAAGGTGTTTTCATCGTATTGTTT 2510016 30 100.0 36 .............................. TCGATCGAGTTTTTTATTTTATAATGTCTTGTTATC 2510082 30 100.0 37 .............................. ATCGAGTTTTATTTTTTTATAATGTCTTACTATCCCC 2510149 30 96.7 36 ....C......................... TAAGCGAACATAAAAAATATAATAATAAATACATAA 2510215 30 100.0 36 .............................. AAGGATGGCCCTTTTGTCCACCTTTGCCGGCTGTGG 2510281 30 100.0 38 .............................. ATTTTTGATTCTAGTATTTCAGAGACGATGGAAGCAAT 2510349 30 100.0 36 .............................. ATTTCTTCGCCGCGTTCCCAAAGGATTCGATAATAT 2510415 30 100.0 36 .............................. ATTTCTTCGCCGCGTTCCCAAAGGATTCGATAATAT 2510481 30 100.0 37 .............................. TCAGGAGCCTCATTTTCATATCGGGGAACTGGATCAA 2510548 30 100.0 35 .............................. CGAAAAAAGGCAGTTCTCTGCCGTATAACAACAGC 2510613 29 86.7 0 ................CA.....-...G.. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 98.5 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCTATCTGAAGAGGAGGAAGCAAAACCGCGACACGAGGTGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGCTGGAAAAGGGAATCCAACAAGGAATTGAACAGGGGATAAAGCAAGGGATGAAGCAAGGGCGCCAACAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGATGGCGAAAGGGTACGATGCCGACACGATCCACGAACTGACCGGGATGCCGATGGAGAAGATTGAAAGGATGAAGGGGTAAGACGGCCCTTCGCCGTCAAGCTCCGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCTGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCAACACGGCTGAACGATATTGACAGAATATTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATTGTGTGG # Right flank : CCTGTGCCGGTGTACCAAAATATTTGTGTTACCCGTGGTGCTAGTTGAGCGTTAGAACTCAACTAGCCCAAGTGTAACTAGGGAATAGGCTAACAATATGCCGTCGAGCGCTACTTCAAATCCGATCATGGAATTTGCTCGGATCCCTGTGATCCGGTATTGGTCAACCAGAACCGAGAACACCGTCTCGATCACTTTGCGTTTTTGTTGGATCCATTTCTCCCATGCCTCGGACGAGCAATGTTTCTGGTTTTTTCGAGACGGAGTCCAAAGCGCCATTTGGTACTCTTCGTACAGCCTTTTTTGCAACTCACGGCTGATGAATCCTTTGTCCCCAAAGTTATAGGGATGAGGAATTTGAGTCATCACGCTTTCAGCGGCGATACGATCATGGCAGGATGCTTCCGTTACCACATAGCCCATGGGCAACCCTTGATCGGTCACTTGAAGGTGCAGCTTCAACCCATAGTACCATTGCTTTTTGGAAGCGCAATACCCGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2512543-2513102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061471.1 Geobacillus zalihae strain SURF-114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2512543 30 100.0 36 .............................. TATCTCCTGTTTCGTAACGCCTAATCGTCTTTTTGG 2512609 30 100.0 37 .............................. TCTGCACGACCTTTTGCAACTGTTCGTCTGCGTCTAC 2512676 30 100.0 37 .............................. CAAAAAACGATTAACAGCTTTCATTTAGCAACAACTC 2512743 30 100.0 37 .............................. CAAAAAACGATTAACAGCTTTCATTTAGCAACAACTC 2512810 30 100.0 36 .............................. TAGACAGGACACGATTGACAAGCTTGATGAACACCT 2512876 30 93.3 38 ..........................G..A CAAAGAAAATGTCGAAAATGTGGGAAAAAGTTTGTTAC 2512944 30 100.0 36 .............................. ATACGATCGATAATGAAACCATAACGCATTTCCTAA 2513010 30 100.0 33 .............................. TTTTTGCTTGCGGCGGTCAAGCAAATCTATGAT 2513073 30 76.7 0 ............T.C.CA...A.C....C. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 96.7 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGGTTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCGCCAGAACAGCTGACATTTTTATATCATGTCGGCCTAGGCAGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTGGTGGTTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAATGTGGTATTCTGAAAACAGCGCTAGATCGAAATGCTTGATGCAACAAGCATTTTTGGG # Right flank : CCTCTCCATCTTCGCGCGCAGGTGTGATGGGGGGCTCGTTGTTGTCGCAGAGTTAGTTCAGACCACATCTCTCATTTGCTTCGTTTGCGGTGATGAAGCATTGTGCGTAACGGATGGGCGCCTGCGGAACAGGCAGTACAGCATTCTAAGTTGGGCAAAGGCATTTCTAGTCTCACGGGTTGCCTTTCTAAGTGACGGGAGAAAAAAATAAGATGGCAGCGATCTATGTTGGCGGCATCTTTCGATCGAGGGAATCCCTTCTGAGCAGGGGATTCTTTTTTTGTGTTTCGTCCTCCGACGTTGTTTTGCGTCGCTCCTTAAAAGGGGGAAGCAACGGAAAAACCAGCTGGAAGAGACGCTCTTTTACTTTCGAGGGCCCTTGTTATTTTCCATTCGCCTTCGCGAAGTTGGGTGGAAAATTCGTTTTTCACCCGTCTCTTCAGTGGAAAAATGTTTGAAATTGTTAAAAAATATCCTCCTCTATAATTGAAAAATAGAAT # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2522532-2524094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061471.1 Geobacillus zalihae strain SURF-114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2522532 30 100.0 38 .............................. CCTGTCTGCCCGATAAAGACATTCTTTTTTCTATCGGA 2522600 30 100.0 40 .............................. AACACTTCCGGCAATTCATTCGCCAACTCCCCAAGTTCCA 2522670 30 100.0 36 .............................. TGGTCATCACCTCCCTTCTAACGCCCTACAGTCGGC 2522736 30 100.0 38 .............................. CTGGAAAAAACGTGGTGAGTTAATGGAGCACAACGGAA 2522804 30 100.0 37 .............................. TCACCATGAAACGGTTAGCTTATGCATTGAAAGATGC 2522871 30 100.0 36 .............................. ACATCTCCGCTTTCTAGTATTTCATTGGCTTGGTCA 2522937 30 100.0 37 .............................. TAACGAATGTCTACATTGATACAATGACCAAAACCGC 2523004 30 100.0 37 .............................. ACAGGTCGCATAGTGACATCCACTCGAATGCCACTAA 2523071 30 100.0 36 .............................. TTAGCTTCTGCCCATGTGCGGACAGTCATACCATCT 2523137 30 100.0 34 .............................. AGCGTATTATCGCACGCCTGCGCCCCTCGCCCGC 2523201 30 100.0 35 .............................. ACAGCTTTCATTTTCATTTAGCAACAACTCCTTGT 2523266 30 100.0 39 .............................. GCAAGAAAATGATTGAATACAAATCGACAGCACCCAAAG 2523335 30 100.0 37 .............................. GATAATCAATAAACACGACAGGCTTCCTGTCCGGAAA 2523402 30 100.0 37 .............................. TGTGCTTACTTTTAATTCCCTTTCTGAGTTAAACCAC 2523469 30 100.0 36 .............................. ATGAACAAAAGCGGTAAATAACGCTGTTTCTTCGTA 2523535 28 93.3 36 ................--............ GATGTTTTCCACTCTACAAACGTCATACTCATATGC 2523599 30 100.0 36 .............................. CAAGAAACCAAAGCGCTCGCTCCGAAACGAACGGGT 2523665 30 100.0 39 .............................. ACCTGATAATCGTTAGTTGACGGGTTCATCGCTGCCATC 2523734 30 100.0 37 .............................. TCCATCCGATGAAGATGAATGTTGCGAAAGTTTTGGA 2523801 30 100.0 34 .............................. CGTGAGCAAACGTTTGAGGTGGTTGAGTGTGCAA 2523865 30 100.0 34 .............................. CAGCAACGATTGGGATTATGCAACGCGAGCGCAG 2523929 30 100.0 39 .............................. ACGGCAAACCCTAGCGCTCCGCCAATCGCAGTGGCCGCC 2523998 30 100.0 37 .............................. GCAGAAAATGCCTTTTCCACTTCCGCCAACACTCTTT 2524065 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ======================================== ================== 24 30 99.6 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AGCGCGCTCGTCTTGAGCGTCGAAAAATCGAGCAGGATATGTTGGAGCGAAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCTCTTCTCTCCCCCGAAGAACGGTTGGTGGCCGAAATTGAACGGTTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAAGTGATCGAGCAGCAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGCATCGGAGAATGGGGAAAAGCCGTCAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGCGATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGCCAAAAATCCTACAGCCATCACGGCCGAACTGTATTGACAGAATTTTTGAAACGTGATATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGG # Right flank : CTTATCCAACTCCCCGTCTTCCACACATATCTGAATCGCGTTTTCACCCACGCAATTTGGTGATCTTTTCTCCTCTTGTGCTGTCTTCGCTGGCAATGTGGAGATGACCCACCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTTGTTTGCTTCCGGATGGGCGTTTGTTTTTGCCTTTGTGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGGTGGGGAGGCGGAACCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCATGTGACGATTCGCGAGGACATCGATGAACGGACGGTGATCCGCACAGGGGTGACGGCGGTGCTGCCGCACGGGGGCAACTGGTTTTTGGAGAAAGTGCCTGCGGCTTGTTTTGTGTTGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 3029189-3029668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061471.1 Geobacillus zalihae strain SURF-114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3029189 36 100.0 37 .................................... AGATTCCCATTTTTATCGTCCTCCTAGCTTATTGATT 3029262 36 100.0 39 .................................... GGAAAGAGGGAATACAGTACCCACACAACAGGCATCAAA 3029337 36 100.0 40 .................................... AAAAGAGCCTCGATTCCCTCGAACTCTTCCATAACGATTT 3029413 36 100.0 36 .................................... GCATGTTCTTCAGGAGTCAAATCCATTGCTGTCACA 3029485 36 100.0 37 .................................... ATCGTTTCTGGAGAAACAAATTGTTTTTTGTATAAAT 3029558 36 91.7 39 ........A..AA....................... AATGATGGGGATGAAACGAAGAGGTTCGATGTAGTTTTC 3029633 36 91.7 0 ...........A..........C.......G..... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 97.6 38 CTTTTTGAGAGGTGGCCTCGTTGAGAGGATTGAAAC # Left flank : ACAGGCGACGAAAGGACAGGCGCTCATGAAACTGGCCGCCCATTATGGCATCGATCTGAAAGATACGGTTGTTTTCGGTGACAGCCATAACGATTTATCGATGTTCGCCGTCGCCGGCTGCCGTGTGGCGATGGGAAACGCCGCTCCGGAATTAAAAGAAGTCAGTGACATCGTCACTGCGTCACATGAGGAAGACGGCGTGGCGGTCGCACTCGAAGAACTGATCGCCACACGAAAACAGTGACGATGGGCATCACTCTTCCCCCCATCCCATTGCTGATGCACGGTCCAAAAACGGCCAAAAATGGGGGGAGGTGTACATAAGTTTTTTTCTTTCATTCACTAAAGTGCGATGTTGATATATCAATGGTTTGGACGTTTGACGATTTCGGTCAAACCGTCTAGTTTACATAACAACAATTTATTTTTTGCGAGGTTTGCAGGGGTGTGCAAAAACGCCCCTTGCTGCCCTAGAAAATCAATGGTAAAATGAAGGTGCT # Right flank : CAAAATAATAGATCCAACAAAAGACCAAGCCTGTGATGCGCAAAAGGCTTGGTCTTTTTTAGATTGTGGCAAACAGGGTGGAATCGTTCAACAAGCTGGAAAGTGTTTGGGTGAAAACAAGGGTATGAAGAAAGGTAAAATAGAAAGTATCTCTATAAGTAGTAATAAATAGATGGATAGGGTTATTTTGCGGAAAAATGTAAAATAATAGATGGAAACAAACCCATTTTATGCTATGATATAACTAGTATATTTTCACTATAGGAGTGGGGATTTTGGCGGAGCAAGTTGTTATTCCGCATGTGTTGCTGTCTGGGATGGTGAAAAAGGCGGGAGACGTATCCGATTCGCTGGAGCTGGTTATGAATGATGAGCATTATTTGCGACAGTTGATGCAATTATCGTCGATCTTGCGCCATGTTTCGCGAAAAGGCAAGCGAACGCTGATCGCGTTTTTTTTGCTGGATGACCGCTTTTATAAATATGAACGGGTGGCGTTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTGAGAGGTGGCCTCGTTGAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 7 3047686-3048095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061471.1 Geobacillus zalihae strain SURF-114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3047686 36 91.7 38 ...........C..G.......C............. GATAAGGAATTCTCCTCAAACAAAGATTCCAAACGGCT 3047760 36 100.0 40 .................................... GTAATGAAATAATCTACAAAACTTGCTTGAAGCGGGGTGA 3047836 36 100.0 39 .................................... ATAGCTTCGCGCAGGAAAGAAATTCTTTCCTGTTTGTTT 3047911 36 97.2 39 ...................T................ AATTCGTTGTATTTTCTGTTGATGATTTCCAACGCCTTT 3047986 36 97.2 38 ...................T................ TCTAAAAACCACGCCATTATAAAAGACAACGTATAAGG 3048060 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 97.7 39 CTTTTTAAAAGATGACCTCGTTTAGAGGATTGAAAC # Left flank : AATACAAAAAAGCGAAACAAGCTGGCGAAATGGCTGTTGAATTATGGGATAAGGGTGCAAAAAAGCGTTTTTGAGGCATATCTAAGCGAAAGAGATTTAGAAGAGATGATGCAGGAGCTAAACCGTTTATCGAAAACGGCGATTCTTTACGGGTGTATGAGCTGACATCGGAAGCTTACCGCAATAAACGGGTGATTGGGGAACAACTTGATTATCTTCCGTGGGAAAACGTTATAATATGAAAAGAATTAAGCAAAGGGTGTCATGCTATTTTTGTTTTGTGCACGGTCCAAAAACGGCCAAAAATGGGGGGAGGTGTACATGAGGATTTTGCTTTCATGTACTGAAGTGCAATGTTGATATATCAATGGTTTGGACGTTTAACGATTTTGGTCAAACCGTCTAGTTTACATAACAACAATTTATTTTTTGTGGGGTTCGGAGGGGTGTGCAAAAAAGCACCTTGCCGCCCTAGAGAATCATGGTAAAATGAAGGTGCT # Right flank : CTTTTCACCGGCCTCCGCATAGAAATGGATGTTTCCGACTTTTAAAATCTAAGCCTCGCTTAGAGGATTTCCCTAGTCATGTTCTGATGAATCTTACTGTGACTTCTTGAAAATACTAAAGATGGAATAGAAGGGGATTAAAGAACAGCCAGCTCTCCATCAATAGAGGGCTGGCTTTTTTATGTATGCGCTGGCATGGAACCAGGAGGTTTCGCGGTTCGTATAAAAGAGGTGGATATGTGTTTGGCTGTGTACGACGGTTCGGTATCCTGCGTTTATAGGCTGGATATTGATCGAAATAATGGCATAAGGCAGTATTTGCGGGAAAGCGATAATGAGGCGCAAGGTGGCGAAAATCACAAAAGCTTTAAGGAAACGGTTGCATGCCGATAATGGGAAAGGGAGTGAAAACACAGTTGATGGGGGTCGATATTTTGTTGTTTATTGGCCGCGGCAGATGGAATATGCATTATAATGAAGATTCACGGTAACAATATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTAAAAGATGACCTCGTTTAGAGGATTGAAAC # Alternate repeat : CTTTTTAAAAGATGACCTCTTTTAGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 8 3051353-3051535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061471.1 Geobacillus zalihae strain SURF-114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3051353 36 100.0 35 .................................... AACGAATTTTACTTCCATTTTTATTTCCCCTTCCG 3051424 36 100.0 40 .................................... ATCCATTGGAGATTGCCTCCATGCTAGTATCTTTTTCTCC 3051500 36 88.9 0 ......................C........A..TT | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 96.3 38 CTTTTTGAGAGAAGGCCTCGTTGAGAGGATTGAAAC # Left flank : AAGTGCAAGCTGCTTCTTATAAGGAGACGCCCCAAAAAAGCGCGGAGAGAGTGGATTTTATCGCTTCTCAGGTACAATTCCAACAGAATGAAAAACCTTCTCCAAAGCGGCCGAAAAGTTCTGGAGAAAGGGTGAAAGATATCAAAAAAAGATAAATTCATTTCCGTTTTGGAAAGATCAATGCGGCTGTTACCGAAGCAACGATATGGATTGGAGAGAAAAAAGACGAACGGTATCGGATACTGTCCGTCTTTTTTCTTGTTTGGTTCCATGCAGCTTCTGCACGGTCCAAAAACGGCCAAAAATGGGGGGAGGTGTACATAAGGTTTTTTCTTTCATGCACTAAAGTGCGATGTTGATATATCAAGGCTTTGGACGTTTAACGATTTTGGCCAAACCGTCTAGTTTACATAACAACAATTTATTTTTTGCTGGGTTCGAGGGGGTGTGCAAAAACGCCCCTTGCCGCCCTAGAAAATCAATGGTAAAATGAAGGTGCT # Right flank : TAATATGCATATTGTTTTCTATATTTGTCTCTCCCTCTATAAAATAATGATTTTCTCGTTTTTCCTTTGCATTTCTTCGATTTTTGTATGAATATAGACGGTTTAGTAGATACCAGAAATAAAAACAAAGGTCCGTTCCAACAACGGACCTTATTTACCTTATTTATAGGATAATTTTTGGACTAAAATGGATTTAATTGGGTTCCCATTTTTATTATCCGATGTATAGATGTGTTTCGTATCATAATTATTATCATAAATCAAATGATACCCTTTTGCATCTTTAGTTTTAGATTCTAAAAACGCCGCATATTCCTCATCAATATTATATGCTTTGCTTACTTCTTCAAAATCTTTATAATAAGTAGCCGCTTTTTCTCCTATGATTTCCACTTGATACACTTGATTTGTTGCTTCGGAAACAGTGTAAATAGCATCTGCATACTCTAAAATGGTGTCGCTGGCTGTCACTTTTTCAGCATTAGGTTCTCCAAATTGAT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTGAGAGAAGGCCTCGTTGAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //