Array 1 839697-840744 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISZ01000052.1 Hafnia alvei strain PCM_1189 726, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 839697 28 100.0 32 ............................ AGCCTCGAAGCTCTTTGTTACATCGGCTCTCA 839757 28 100.0 32 ............................ GTGCTGGCAATGTTAACCAAGCATGCGAGCAA 839817 28 100.0 32 ............................ AATTCCATCGGCAGACTTGATGGTCGAACCGT 839877 28 100.0 32 ............................ TACGACGATATGTTGTCAGCGGCGACGCAAGG 839937 28 100.0 32 ............................ ATGATCACAAAAGGCGATATTGTAGAAATTGC 839997 28 100.0 32 ............................ ATATTTACCTTGATATTCGCTCTCAAAATAAT 840057 28 100.0 32 ............................ ACTATGGGCGCTTGTCGTTACTTGGTCTTTCT 840117 28 100.0 32 ............................ TACCGTTGATTACCTGTCAACAAAAGACACGT 840177 28 100.0 32 ............................ CATCGCAGACATACCCGATTAACACACTGGAG 840237 28 100.0 32 ............................ CTTCAATCGCCGGGTAACAGTTCGCCGCCACA 840297 28 100.0 32 ............................ TGAGAAATCAACATTCCGTCATCATCATTACA 840357 28 100.0 32 ............................ GCGCTCAAGCTGGAAATCTTCCCCGTTAAAGT 840417 28 100.0 32 ............................ CGTTAATCATTGTTTCGGATTGTCTGATTCGT 840477 28 100.0 32 ............................ CGTATGCGTTATAAGCGAGATGGGCTGCGTAA 840537 28 100.0 32 ............................ GTTGCGGGATTAATCATCGGTGTTGATACGTA 840597 28 100.0 32 ............................ ATCATTATTTGCGCTTCATTGCTATTGTCATC 840657 28 100.0 32 ............................ GCCGGGCAATTTAACGTTAATGCTTACAGAGC 840717 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCACTGGCGCCATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAGCGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : ACTCACCATGGTTTGTGTTTAATTTTATTCGCTATGTATCAACGTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGAGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTTGGTTTTTGCGGCGGAGGGGGAACCCCATTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 163713-163446 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISZ01000053.1 Hafnia alvei strain PCM_1189 727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 163712 28 100.0 32 ............................ ATCACTGAGACGGTGAGGAATCGAATGCTCTA 163652 28 100.0 32 ............................ GTGATGCTTGGAGTGCGATGAAGCCAAGGATT 163592 28 100.0 32 ............................ ATCAGGACCTTGTGTTTTGCAGCAAGGCTTTT 163532 28 100.0 32 ............................ ATCAGGTACCACCGGTTCCATGCTATTACCCC 163472 27 89.3 0 ....................-.C.T... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCAAGACCTGCTAAGGCCAGCAACCGTATCGATCCTGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGTAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCAACTTTCCTGTGGGATTCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACGAACCCTTTTTTTGCGCCTACTTATAACCCTTTGATTTTATGTGGGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACT # Right flank : AACAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGTCTGTCATACAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGCATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATCAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGTA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //