Array 1 90927-92541 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVVK01000004.1 Escherichia coli strain NIFDS_EC2017_I318 EC2017_I318_Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90927 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 90988 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 91049 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 91110 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 91171 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 91232 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 91293 29 100.0 32 ............................. TGCCGTCAGGCCAGCGACACATCAGACAACTG 91354 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 91415 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 91476 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 91537 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 91598 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 91659 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 91720 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 91781 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 91842 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 91903 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 91964 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 92025 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 92086 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 92147 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 92208 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 92269 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 92330 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 92391 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 92452 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 92513 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 108043-108682 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVVK01000004.1 Escherichia coli strain NIFDS_EC2017_I318 EC2017_I318_Contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108043 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 108104 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108165 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108226 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 108287 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 108348 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 108409 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 108470 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 108532 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 108593 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 108654 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //