Array 1 18489-17928 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNF01000007.1 Bacillus pumilus strain Pine1 NODE_7_length_136666_cov_41.608544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18488 32 100.0 32 ................................ TTTCTCCTAAATAATCATATTTTTTCAAAGCA 18424 32 100.0 33 ................................ ATGTCAGCAGCTTCTGAATTCGTCACTTGATTC 18359 32 100.0 34 ................................ TCTTTTACATTATCGTCAACAATGAATGGAAGTT 18293 32 100.0 35 ................................ ATATATTGTTTCTGGGTTGTTAGTGATAAGTGAGT 18226 32 100.0 35 ................................ CAGTTGTTGTTATTGTGGGTCTGGCAGTGCCTATT 18159 32 90.6 35 ........C..T......A............. TTATGTATTTCCACTACTGTTCCTTCCCCATATAA 18092 32 93.8 34 .........A....A................. AATTGCAGAGTCTATACCTTGCACTTGTACTCTT 18026 32 93.8 35 ........C..T.................... ATTACAGTTTCATATCCCTCCATAGCTCCGTTGAC 17959 32 93.8 0 ........C..T.................... | ========== ====== ====== ====== ================================ =================================== ================== 9 32 96.9 34 GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATCTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTCGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTAACTTTTCGGGTTCTTTTACAGATGTCCCGGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTGCTTGGATATGTCGGTTTATTTGGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTTTGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : AACCTTTTTCAATCCATCAAGGATAGCCAGGATGGATTGAAAATGTCTTGGATATCGAGATAGCGCAGTAATTCGTCGTCACACTCAACATAAGTGCATAGTCCACAGTTTCTGCGAATTACATAAATTCAAATATCTATCCCCAAAAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATAATCTCACCATTCATACTG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19075-18780 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNF01000007.1 Bacillus pumilus strain Pine1 NODE_7_length_136666_cov_41.608544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19074 32 100.0 32 ................................ TCTAAGGGGGATAGCTGTTTTTTTGCCCTTAT 19010 32 100.0 34 ................................ CTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTC 18944 32 100.0 33 ................................ TCTAACTTTTCGGGTTCTTTTACAGATGTCCCG 18879 32 100.0 35 ................................ CTTGCTTGGATATGTCGGTTTATTTGGTGTTTCAG 18812 32 90.6 0 ...................GA......A.... | T [18783] ========== ====== ====== ====== ================================ =================================== ================== 5 32 98.1 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AAGTAGCCGTGCTTTCACCATAGTTTTGCGTCGCACTCTATATGAGTGCGTGGATTGAAATCTCTCAATTTGATAGTTAACTTGTTGCTTAAAAGTCGATGGTTCAGCTTGATGTTTTTTTCAAATCGCACTCTATATGAGTATGAGGAGTAAAATTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGTTGTGAAAAACAAAACTCTGTCTCAGCCTTTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTAGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTTTGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATTTTCTCCTAAATAATCATATTTTTTCAAAGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATATGTCAGCAGCTTCTGAATTCGTCACTTGATTCGTCGCACTTTACATGAGTGCGTGGATTGAAATTCTTTTACATTATCGTCAACAATGAATGGAAGTTGTCGCACTTTACAT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 19677-19419 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNF01000007.1 Bacillus pumilus strain Pine1 NODE_7_length_136666_cov_41.608544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================== ================== 19676 32 100.0 34 ................................ AATTTCCTCCGGCCATTTTTTTGTTAGTGATGGT 19610 32 100.0 33 ................................ TTGTAAGTAGCCGTGCTTTCACCATAGTTTTGC 19545 32 100.0 63 ................................ CTCTCAATTTGATAGTTAACTTGTTGCTTAAAAGTCGATGGTTCAGCTTGATGTTTTTTTCAA 19450 32 81.2 0 A.................AT.A...G.A.... | ========== ====== ====== ====== ================================ =============================================================== ================== 4 32 95.3 44 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GATGCCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGGCCCTCGAGACGATGACTCACCAACACCTATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAATCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCGGGTTATGGAAGACTTAAAATGGACGACGTCATCTAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACGAAAATGGTAAATGATGTATATTTTTTAGAGAGGAAAACAAAATTCTATATAGAAACTTGAGGATTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGTTGTGAAAAACAAAACTCTGTCTCAGCCTTTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTAGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTCTAAGGGGGATAGCTGTTTTTTTGCCCTTATGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTCGTCGCACTCTACATGAGTGCGTGGAT # Questionable array : NO Score: 7.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:-0.74, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 27554-27321 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNF01000007.1 Bacillus pumilus strain Pine1 NODE_7_length_136666_cov_41.608544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 27553 32 100.0 34 ................................ AAGAATCGCTTTTGTTTTCTTTGCGATAGTTAGT 27487 32 100.0 34 ................................ GCTAATTTCGCGCTCAATTGGCACACGCTTAGCC 27421 32 96.9 33 ................T............... GATTTCTTCGTCTGTTAAATCTTCATAGTATTT 27356 32 84.4 0 .......C...T............T..TC... | AC,G,A [27332,27338,27347] ========== ====== ====== ====== ================================ ================================== ================== 4 32 95.3 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTCTACATGAGTGCGTGGATTGAAATATAATATTGCCCGATCCTGCATAGGCGTATCCTCGTCGCACTCTATATGAGTGCGTGGATTGAAATACAGTAGCCGTATTAATTACAGGTCTTATATTTGTCGCACTCTATATGAATGTGAGGAATAAAATTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : GATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAAATGGTTTGGGTGAGACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATCCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGTA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 28258-27897 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNF01000007.1 Bacillus pumilus strain Pine1 NODE_7_length_136666_cov_41.608544, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28257 32 100.0 34 ................................ TAGTTTGTTCCGCAGGCACAATTGTTACTGTATT 28191 32 100.0 33 ................................ TTTATTCAAGTTTTTCTCCTCCCGTCCCTTACA 28126 32 100.0 35 ................................ CATTATGTTTCCTGTACCTGCATAGGCGTATCCTC 28059 32 100.0 34 ................................ ATAATATTGCCCGATCCTGCATAGGCGTATCCTC 27993 32 96.9 33 ...........T.................... ACAGTAGCCGTATTAATTACAGGTCTTATATTT 27928 32 81.2 0 ...........T....A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCGGCTGGGTGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACGAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTTTACATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTCATGAAGAAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGAGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAAGAATCGCTTTTGTTTTCTTTGCGATAGTTAGTGTCGCACTCTACATGAGTGCGTGGATTGAAATGCTAATTTCGCGCTCAATTGGCACACGCTTAGCCGTCGCACTCTACATGATTGCGTGGA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //