Array 1 9564-9714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADHZV010000038.1 Leptospira borgpetersenii serovar Balcanica strain P44 NODE_38_length_32643_cov_57.519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9564 29 96.6 32 ..................A.......... AGATAGTTTGGTTTTTTTATCTGCGCCTTGAT 9625 29 100.0 32 ............................. TTAGGGACTGTTTGGGGAATTGATGTTATTTT 9686 29 79.3 0 ......................GA.CGTA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATCCCGAATAATTGCGATCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAATTGATTTATAGATAGGAAAGACACTCAATAATTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCCTGGGAGAACAACTCTGATGAAATATTTTAGATAATCCTGTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCATCTTACTTTTCCTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAGTAAGCGTACCTTAGATGTTAACGCTAGTGGCAATCTTCAAACACAGGGTTGCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGGCGATTTGTCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : ACGTAAGATCCATAAACACCAAAATGAGGTACGTAATTGTGGAACTCCCACGTTCAGAAGACCGACAACAGTGTTGCTACGATTGATCAGACTGACATTCGCGTGTTGTTTTGGTATACCGCAAATAGGAGTTGTTCTTAGTCTTAAAACAACTCAGCACAACGCTTCCTATGAAGCGCGTTTTGTGAATCAAATCTGCAAAGCGGGCTGCTTCAACACTGAACTAAAAAGTATTCCTTCTTTATCGTACATCTTCTCTAACGAATTAAATTATCTGATGAAATATTATTTTAACTTCGAGTTACCAGATTCGTCACCGCCCAAAGAAATCCGGATAACTCTCTGAAAATTGAGGTGATCATTAACTGAGGAGTTTTTCCTCTTAACTGTAGATTACGAAACTTCTTGTGTAACCTGAGAGAAGCTTTTTCCGCTAAAGAAACGACTAACGCAAGTCATCCCGATCTTCATGCAGTTACAATTTTACTTCCTGTTTCAGG # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6561-7003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADHZV010000136.1 Leptospira borgpetersenii serovar Balcanica strain P44 NODE_136_length_7170_cov_33.6977, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 6561 29 79.3 40 ..............T..GA.T..A..A.. TCTGAAAGTATTAGATTCAGGGCTCAATGAACTCACAACT 6630 29 100.0 40 ............................. CCTAGACGGTTTAAAGTTAAGGTACAACAAATTCAAAACG 6699 29 79.3 40 .....A...........GA.T..A..A.. TCTGGGATTATTAGATTTAGAGAAAAACAAATTCAAAACG 6768 29 79.3 40 ...............T.GA.T..A..A.. GCTACAAGTATTAGATTTAAGTCACAACAAACTCAAAACG 6837 29 100.0 40 ............................. CCTACGATATTTAAATTTAAGCGACAATCAACTCATGACT 6906 29 100.0 40 ............................. CCTACGATATTTAGATTTAAGCGGCAATCAACTCATGACT 6975 29 75.9 0 ......G........T.GA.T..A..A.. | ========== ====== ====== ====== ============================= ======================================== ================== 7 29 87.7 40 CTTCCGAAAGAAATCGGAGAATTGCAGAA # Left flank : TGACGATACCCTGCGTTTAAATGAATCCGTGCAAAAAATTTGTCTGCGAATGTTATTCGGTCGCGTGCGTTTGATCGGATTTCGATTTTTCGAAAATTACTCCCCGAAACACGCATTGACTTTGCCGAAACGAGATAAGAAAGTAACGACCTAACGAATCGTATTGAACTTTCTCCGAAAAACCGGACCTGGTTTTTTCTTTGTATGATTGTGCCCGACAATTCGGAGTCATTTTACGCTTCCGAAAGAACGCTGGCAAAACGATACGCAAGGAATGACAAAACAGAAAATATTTTTAAAATGGCACTGAAATGATAAAAACCACGAACTTACAAAAAATTTTAACTTTAACTTTAATCCTTCTTTGTTTTTGGATTGTATGGGAAGACAAAAAAAACGACGAAAAAAAAGCAAAAGAATCCTTTACCAATCTGGCCGAGGCCCTTCAAAATCCCATGGATGTTGGAGCATTATATTTAAACGGCAATGAACTCAAAACG # Right flank : TCTACGATATTTAAATTTAACGTGAGTTCGGCCTAAGGAGAAAGTAGAAGTTGTAAATTGTCTTTGGATTTCAAATTCAAAGAAGGTTTTTTTGGAAAAAATGAAAATGCGACTAACCCGCTTAATAGATTAACGGCCCAATTGAAAAAACTACGATGCCTAGTATG # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.39, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCGAAAGAAATCGGAGAATTGCAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //