Array 1 44003-45739 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGQC01000003.1 Escherichia coli strain TUM18541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44003 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 44064 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 44125 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 44186 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 44247 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 44308 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 44369 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 44430 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 44491 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 44552 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 44613 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 44674 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 44735 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44796 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44857 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 44918 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44979 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 45040 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 45101 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 45162 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 45223 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45284 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45345 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45406 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45467 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45528 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45589 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45650 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45711 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTTAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61241-62488 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGQC01000003.1 Escherichia coli strain TUM18541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61241 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 61302 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 61363 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 61424 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 61485 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 61546 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 61607 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 61668 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 61729 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 61790 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 61851 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 61912 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 61973 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 62034 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 62095 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 62156 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 62216 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 62277 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 62338 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 62399 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 62460 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //