Array 1 540372-543958 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025198.1 Acidipropionibacterium virtanenii strain JS278 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 540372 35 80.6 27 .......T.....T.-....AA..G..A........ GTCACCAACAGACGATACTCGGCAAGA Deletion [540434] 540434 36 80.6 36 ..T...G...........T.AA.G...A........ CGAGATGGCGGAGCACTCCATCGAGCAGTGGCACCG 540506 36 83.3 36 ..................T.AA.G...A.......A GACGCCGTTGGCATCGCGGACGATGGTGTGGCCCTG 540578 36 100.0 38 .................................... GACCTGGCGGTGGGCACGGAGGTCACCGCCATCGGCAC G [540604] 540653 36 97.2 36 ......................C............. TGCATAGGCGGACATGAAGGCCGAGCTGGCGAACGG 540725 36 94.4 37 ...........A..........C............. ACAGGGCCACGTGACCGGCCGAGCCGCCGGTGTCGCA 540798 36 100.0 34 .................................... GTCCGGTGCGCACAGCCTCCATGAAACCGGGGCC 540868 36 100.0 37 .................................... CCGATATTCTGGAGTTTGTGCACGAGTATGGCAAGCA 540941 36 100.0 39 .................................... CTCCTGCGCGGGCCTGTGAGATGTAAGATTCTTGTTGAA 541016 36 100.0 37 .................................... GCACGGCACCATTGATTCCATCCGGGGGCCCCAGGGT 541089 36 100.0 36 .................................... CGGGAACCCGGTTCTGGCCGGCGGCGGAGCGTTCGA 541161 36 100.0 35 .................................... CTCGGCGCGTCGGCATTCTCCCCGGAGGAATAGGT 541232 36 100.0 37 .................................... AACTACTTCGGAGGGATGCACCGATGAGTGCTGTCCT 541305 36 100.0 36 .................................... GGACTCGATGGTGCCCGACAGGAAGCGATCGACGAA 541377 36 100.0 39 .................................... TGGCCGGTGCGGCGGCGAACCCGGGGGAATGACAGCCTC 541452 36 100.0 38 .................................... CTTAGCCGTAATTCATGGACATGTCAGACTCCCATAAG 541526 36 100.0 37 .................................... ACGGCCAGCCACAATCACAGCAGCCGTCGGTGCCGTC 541599 36 100.0 36 .................................... TCGAACACGTGGGCGTTCCGGGCGATGCAGTCGCTG 541671 36 100.0 36 .................................... TCGCGTCTGGGCCAATGACGACAACACGGACACGAA 541743 36 100.0 39 .................................... CGCCGGTGCCCCACGACAGTATCCCCGACCATCTCGCCT 541818 36 100.0 34 .................................... TCGACTCCGGGGAGGTGTACAACGAGCTCCTGCT 541888 36 100.0 37 .................................... TCGGGATACCGCATGCCTCGTCGAGGATGGCCAAGAC 541961 36 100.0 36 .................................... CCAGTTGCAGGCGGACACCGAATCCATGTTCAACGG 542033 36 100.0 36 .................................... TTGGCCGGTCGGTCGGCCGTCCTTGGTGGTCGGCAT 542105 36 100.0 34 .................................... TCGGTACCACAGCCACCACGGCCAAGGCTGGCAA 542175 36 100.0 37 .................................... GCCTGATCAGCATCAGGAACATCGGCCCGGGGGAGCG 542248 36 100.0 37 .................................... TCGAGGACATGCCCTACTTCCGGGGAGCCGCCGTCAA 542321 36 100.0 37 .................................... ACATCCACGGGTCCACGCCGTGCCACGATTGATTCTT 542394 36 100.0 36 .................................... GGTGGCGCCGGTCACGATGTCCCACAGTCGCAGCAC 542466 36 97.2 38 ...................................T ATCATCGTCGCCGTGGCATCGGGTGTCGCGTGCCATCA 542540 36 100.0 39 .................................... TTGAGAATCCCTCCGCCGGTAAGGCCAAGGCCCTTAAAT 542615 36 100.0 35 .................................... TTCCACCTGGAAGACGTGGAAAATTCTTTGTCCGG 542686 36 100.0 35 .................................... CGTCCCGATGCGAAGTGAAGGTTTTCGGTGGCTCT 542757 36 100.0 40 .................................... GTGCCATCGGTGCGATCCCCTCGGCCTCCTCGACGTCGCC 542833 36 100.0 36 .................................... CGTCGTGCCTCTCGGAGTGGATGCCATGCCTTCAGG 542905 36 100.0 37 .................................... GCCATCGCCGGTGTACCCGCCGTGCCGGAAGCCCGGA 542978 36 100.0 38 .................................... AACATGCTCGGCGGCAATCAGCCGGCCGTGTTCAACCT 543052 36 100.0 39 .................................... CCGCATCAGCCACTCGACCCGCTCTTCCGGTGTATCGCC 543127 36 100.0 38 .................................... ACAGCGAATGCGACACGGCCGACAATCCGGCCGAGCTT 543201 36 100.0 39 .................................... CCGCATCAGCCACTCGACCCGCTCTTCCGGTGTATCGCC 543276 36 100.0 37 .................................... ACTGCCGTGCCGCGAATTCGGAGGCGAGGAAGGCGCA 543349 36 100.0 35 .................................... GGGAACGGATTCGCAAACCAGAGATAGGCGAACTT 543420 36 100.0 34 .................................... TATCGATCACCATTTCGTAATCATCGGACACGAA 543490 36 100.0 36 .................................... CTGCCCAGTCGGATTCCCGCTCTTGTCAGTGGGGCA 543562 36 100.0 37 .................................... CCCCGAGCCGTTGGGGACCTGCTCGTCTGCTGGAACA 543635 36 100.0 35 .................................... TTCGCGGCAGCCTTCGGGGTGATGACGCCGGCCGG 543706 36 100.0 38 .................................... GTGATGGCGCGGCCGACCAGATGGTCCAGCCCGGACTC 543780 36 100.0 35 .................................... CTGGACGAGCTGGAGGTGTTGCCCTCGATCTGCCG 543851 36 100.0 36 .................................... TCAGCCTTCAGACGGAAGTCCGCCTGAGCGGTCTTC 543923 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 50 36 98.7 36 GCCTCAACGAAGGGCTCCCCGGTAAAGGGGAGCGAC # Left flank : ATCAACTACACGCATCTGTTCCACGCCGCCAACGAGCGGGTGCCTCTGGACGGCCTCACCTTCGGATCCAGAGTGATCGGCAGACTCGTGGAGACCTGCTGAGGCGGGCCTGATGCATATGCGCTCGACATCCCGGTAGCCGAGGCGTCAGCCAGGACAGGCCTGAGGCCGGCCCCATCTGGGGGCCGGCCTCAGGAACTCTCGGCGCGGACGCTTCTCGATATGACGGTGCTCAATCAGGGGGCGGGGGTGGCCTCGTCCTCCGTGTCCTCCTCGGCCCGCTTGCGCGGACGCACCCGGAACCAGTACCAGAGGCTCACCACGGCCAGGAACGGGGCGCCGAACACCAACGTCAGGTTGAATGACGAATCCGTGAACGGCGTCGAGAGCAGGAGTTGGTGGCTTCAATTTTCACGCCGCCCTTGCGACCTTGACGAAGGGTTCCTCAACGGAGAGGAACGAGACATCGTGACGGCCCTGTCCGCGATGAACAGTCAGCT # Right flank : CAGCGGTCTCGCGGAGCGGGTCCTGACAAGCAGTCCAGCACCCCTCCGCGAGAGTCCATCGTAGCGCTGCACCGCCCGCGCACCCCGGTGGCTTCTGAACTCCCGGCATCCATCCACTGACAAGGCCGGATGAAGGCGCGAGTGGTTACCGGGAATCCGCGGAGCGGGGGACCTCTCGCGGGGGGGTCAGATGATCATCGACCCGTCTCCGACGATGTAGCGGGAGTGACCCAGCCACGTGACACCCCGGTTGTCAGCCGTCTTCTTCAGACCTGCTGATCTGGGTCGGGACCCGGGGCTCGGCCTCCAGCCTGGCTGTGACAGCCGTGATCGTGTAGGAAGCAGGGGTGTCATTTCCGGTTTCCTACACGCTTTGCGCCGTGGGCCGTCGCAGTGGCGCTTCCCCTCACTGGGTCCGGTCTTGACCTCGCGGGTGTCGCGATGATGCCAGCTGGCAGGGTTACCTCGCGTACGCCGGGCGACCTCGATCGGACAACAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGGGCTCCCCGGTAAAGGGGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 569202-570607 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025198.1 Acidipropionibacterium virtanenii strain JS278 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 569202 35 83.3 107 T.G....T.........T....-T............ ACAGCTGGTTCGGGGCGGCGCACTGCTCGGAACCGACGCCTGAACCAGGGCTCCCCAATGAGGGGAGCGACTGCCAAACAAGTTCTCACTGCGGCAACGGCCTGCCT 569344 36 86.1 36 ..................T..AAG...A........ GAACTGCCGCGCAGCCCAGTCCTCGGTGTCGGTGCC 569416 36 94.4 35 ......................T..........A.. CTGGCACCTGGCGTCAAAACGCTCGAGGGACTTCA 569487 36 80.6 35 ..................T.AATG...A...A.... GTGATTCCCATGGTGCTGGGCGACCTCAAGCCCGA 569558 36 94.4 35 ....T.................T............. TCCGTGCGACCGTCCTGCTGAACCGACCGGTAAAT 569629 36 100.0 38 .................................... GCGGGGTCGGGGTGGGGCAGCATCTGGTCGGCGCGGTG 569703 36 100.0 35 .................................... ATCAGTTCCGTGCGGGACTGCGGCATGGGGTCGGC 569774 36 100.0 35 .................................... GTGTAGCCCAGGGCGTCCTCGTGGTCGCTGACCGC 569845 36 100.0 37 .................................... CGAGACGCTGCACACCGCCGATCTGGCCGCCCGACGC 569918 36 100.0 37 .................................... TGGTCGGTGCTGCAATCCCCTCCCGCACCCTCCTCAC 569991 36 100.0 36 .................................... GCGATGGCTGGTGCTAATCCCAGGCGATATCACCTA 570063 36 100.0 41 .................................... ATGAAGGCCCGCTGCGCCATCCGCCGCGTCCCGAACTCCAA 570140 36 100.0 35 .................................... AATCCTCTTGCCCAGTTCAAGCAAGGAATGATGCA 570211 36 100.0 36 .................................... GTGTGAGCTAACAAAGGTGGTTCTTGATAAGTGGTT 570283 36 100.0 35 .................................... TTGTCGACTGCGACCTTGCGGTTGGTGCGCCGCGG 570354 36 100.0 37 .................................... GGATCGCATCGATGATCCGAGCCCGCAGCGCCTCCCC 570427 36 100.0 37 .................................... CGGCGATCTCCTGCTCCATGCGCGCCACATCGGTCTG 570500 36 100.0 36 .................................... CAGCCGGGCTGGTGGTGGTTGTCGCAGGCGGGCGGT 570572 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 19 36 96.8 40 GCCTCAACGAAGGGCTCCCCGGCAAAGGGGAGCGAC # Left flank : ACACTAACAGAAGATGTTTGGAGGTGAACAGAGACGATCTCAAACTGTTTGAAATCGAACATCTGGGTCCCCATCCCGCTGAGGCTGGCGGTGTGCGCATCCAGCTGGTACAGCGCCTCTGAAGGGCTGTCGTGGCGATGGCGTGGTGGGGCAGTTGGCCTGGCCCGACTGTTCAGGCACCAGCCTCGGTGCGCCACGAGTAACCTTCTGCGTGTGCCGTGCGATGATCGAGGGAATGTGAGCGATCGATGATGAAAGGCCAGCGGGTACCCGGCTGCTGCGGATCGGCCGGTATGACTGAAGAGCTGACTCCCCTGCTGATGCTCCATGGGTGGCGTCGCGAGCGGCACGCACGCGCGGTGGCGGTGCGCATGTCGACGCGATCGCCGACTGTGTCGGCGGCCACGTATCTGGGTCGGCGCCGGTAGGAGCAAGACAGGAGAACACGCTGGCAGGTTCGACTGGCTACAGCTGAGCCGAGCAGACGTGCTGCAGGTGGA # Right flank : CTAGGTGAATATTCGCGTACTTGAAGGCCGGTGGTTCGTGCCTTTGGGAACCAGTCCTGGTGCGTGTGGGGGCCGGGGCTGGCATGCATCGGGACCACCCGCTCCGACCCCCATGCGGGTAGGTCAGCCCATGCCCTGACTGGCGTGACCGTCTTGGGCCGCCTTCTCCCTCATGTTGACCTGGCCGGTGTTGATCCATACAGCGGTATGTACGATGCGGTCCAGGATCGCGTCAGCATGAACCCCGCCACCCAACCGGGCATGCCAGTCCTTCTTCGCGTATTGGGTCGCGAAGATCGTCGACCCCGTATCGTGACGGTGCTTCATCAACTCCAGCAGCATCGCCCGCATCGGCTCATCAGGTGGGTCCAGGAGCCACTCATCAAGGACCAGCACGGTGAACGCCGCATACTTCTTGATGAACTTCGATGTGCCCCCGGGGCGGTCCCCGGCCACTCTCCACGCCTCGGCCAGGTCCGGCATCCGAATCACATGAGCCC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGGGCTCCCCGGCAAAGGGGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 3 573253-578799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025198.1 Acidipropionibacterium virtanenii strain JS278 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 573253 36 100.0 34 .................................... ACGACGCGGTCGTGCAGATGGCTGCCACCGACCG 573323 36 100.0 36 .................................... ACGGTGGAATGGTGACGTCCGATGATCTCACCATCG 573395 36 100.0 35 .................................... ATGGAGGACAAGACTAAGAAGCACATCACCATTCA 573466 36 100.0 38 .................................... TTGCTTCCATGTTCTTCCTTCTTTCACTTGACGGGGCT 573540 36 100.0 34 .................................... CCGATATCATGCCATACTTCTTGGCCCAATTACC 573610 36 100.0 35 .................................... TAGCAGTAATATAGGAACCATTCAAAGTTCCCACA 573681 36 100.0 36 .................................... ATGCTGCGAGGCGGCATCTGAATGGCAGCACGAGAA 573753 36 100.0 35 .................................... CAGTTCTTCTCCTTCTCGCCGTCGCCCCACGCCTT 573824 36 97.2 35 ............................A....... GGGCGTGACCGTGTGGGCCAACCCGGACGATATCG 573895 36 100.0 37 .................................... CGGCCAGACCCATCTGGATCAGCCGCTGCTCACCGTC 573968 36 100.0 35 .................................... TCTTGGTGAGCGGCTGGAGGTTGATCTGGGTGGTG 574039 36 100.0 38 .................................... CACACGTCGCGGGTCTGCCCGTTCGGCAGGGTCAGGGG 574113 36 100.0 37 .................................... TGTCTATCCCCGCGGGTTTCCGGCCGATCTTCCGGAA 574186 36 100.0 37 .................................... CCGGCGAATTCCTCGTCGACTACGTGCGCGCGGTCGG 574259 36 100.0 34 .................................... ACCAGCCCCGCTACAACATGTTCGACCGGTGGAT 574329 36 100.0 41 .................................... CCGCCGGACTCACGGGTCACCCTGCCGTCCGGTCGCGTGTC 574406 36 100.0 36 .................................... ACAGATCCGGCGAGACAGTACCGATTCCTGCTCACC 574478 36 100.0 36 .................................... CAGGAGCGTCAGCCAGGTGACGTAGAAGATCAGCGC 574550 36 100.0 34 .................................... CCCCCGCCCCGCCGTTGGCGGTGGAGAGTCCCCC 574620 36 100.0 34 .................................... CCCCCGCCCCGCCGTTGGCGGTGGAGAGTCCCCC 574690 36 100.0 36 .................................... GAGCCGCTGGTCGATGCGGCGGCGCAGCGCGCCCGC 574762 36 100.0 37 .................................... CGGCGGGGCAACACGGGACATGGCTAGGCGAGGCCGG 574835 36 100.0 35 .................................... TCCGAGGTGCTGCCCTCCATCCGCAAGACCGGCTC 574906 36 97.2 34 ................T................... CGAACTGTGGTGTGAAGGGCTCCGAATTCGGTTT 574976 36 100.0 39 .................................... TGGACTCTTCCGCTGACCGCGGACCTCGGCACCATCCCC 575051 36 100.0 36 .................................... GAAGGCACGGGTCGACATCATTGCGGCCCAGCGCGG 575123 36 100.0 36 .................................... AGATCGGCATGGAAGGGCTCAAATGCTGGACTCCCG 575195 36 100.0 37 .................................... GGGCGCGTTCGGGGTCGTCGACCCGGGCGAGGCGCCG 575268 36 100.0 37 .................................... GTCCAGGGGCTCCTTGCATTCGTGTCTAATCTGTTCT 575341 36 100.0 35 .................................... AACCCCGGGTCGGTCTCCTCGATCAGGAAGGACCT 575412 36 97.2 35 ............................A....... TTTCGTTGATTCGGGTAACCAGGAAAAATATAAGG 575483 36 100.0 36 .................................... CGGACGTGAGTAGCCTGGCGGAGTCCGAGGCAGGAA 575555 36 100.0 38 .................................... GACATGCCAGGTCCCAGGAGACACTTCTCCCGTGATCT 575629 36 100.0 36 .................................... GACCGGAACGGATGCGACCTCATCCACTGACTTGAT 575701 36 100.0 37 .................................... CCGGATCGTCAAATCCGATTCCGACATTGATGGAGAG 575774 36 100.0 35 .................................... GAGCGGCGAGCGCTACAAGGTGAAGGCGGCGAACC 575845 36 100.0 36 .................................... GGTCCCCAGCCGAAGCGTCGAGGGTCTGCTCGACTC 575917 36 100.0 36 .................................... GACCGGAACGGATGCGACCTCATCCACTGACTTGAT 575989 36 100.0 37 .................................... CCGGATCGTCAAATCCGATTCCGACATTGATGGAGAG 576062 36 100.0 35 .................................... GAGCGGCGAGCGCTACAAGGTGAAGGCGGCGAACC 576133 36 100.0 34 .................................... CCGGGCGGTACGGCTGTGAAGACGTGCGCCTGCG 576203 36 100.0 34 .................................... CTTTGGTTTTTCCGAGTGTGTGCTGGCCGCCGAA 576273 36 100.0 38 .................................... TTCCCGGAACGCCTCGGCGCCAGCACGTGCACCTCGTT 576347 36 100.0 36 .................................... GGGCTTCACGTCGGCCCACGCGAAGACGATGTTGCT 576419 36 100.0 37 .................................... GGATCCGCAAGAACAAGGTGAGCACGACTCAGCGTGA 576492 36 100.0 36 .................................... TCCTTCGGGTGGTTCGTCCTGCTGACATGGTCCATG 576564 36 100.0 35 .................................... TGGCCTGACGCCGACCTCACCGCCACACAGCAGCG 576635 36 100.0 38 .................................... GGTTCGGGCCTGCCAGCGCTCCACGGGTTCTCCTAGGA 576709 36 100.0 37 .................................... CGTATCGGAGCGTCTGCACCAGTGCACGCTTGGCACG 576782 36 100.0 38 .................................... TTCCCGCCCGTCAAGATACCCGGATTCCGTAAGGGCGG 576856 36 100.0 38 .................................... ACCGTTCATCGCAGGTCCTCCTCCCCCAAGATGATCGG 576930 36 100.0 40 .................................... TTCCGGGGGGACATCGGCCAGATCCGTGACGACGTGCGCA 577006 36 100.0 35 .................................... CACCTGACTGCTCATCGAGCCCGTCCTTTCGCCGC 577077 36 100.0 35 .................................... CAGCAGGGACGCGATCACCGGGGCTAGTGCGGTCA 577148 36 100.0 36 .................................... GCGTGATGGGAAGGCCGTGCCCGTGCTGCCGTCCGC 577220 36 100.0 40 .................................... CAGGGATGAAACTGTCATCCGATTCCCCGCACACGCAGAT 577296 36 100.0 37 .................................... GGAATCTCATGACAATCTCGACCGGTGACGAGAACCA 577369 36 100.0 37 .................................... ACGCACTGGAGGCACTGCACCCTACCCGGGTGCTCAT 577442 36 100.0 35 .................................... CCCGTGCGAGCGTCCTTGGAGCGGCGGCCGATCAT 577513 36 100.0 39 .................................... ATGCTGCTGCCGCCTGCTCGTCGTCAGCCTCAGGTGTCA 577588 36 100.0 35 .................................... CAAGGTCTACCAGCTCGCCCTTGATGGTTTCCTCG 577659 36 100.0 40 .................................... ATCCGGGAATTGGGGGGCTGACCGGCCAAACCGGACTTTT 577735 36 100.0 38 .................................... GTCAAGCGACCGGAGGGAGCGGCTGCCCAAGGGTTGGG 577809 36 100.0 39 .................................... CTACTCGGTCTGGTGCAAGGCCAGCACCGACAGCGCGCC 577884 36 100.0 39 .................................... CTGCAGCCAGTAGCAGGCGTCCTGGGGTTCGGCGAGGAT 577959 36 100.0 35 .................................... CTGGCTATCTCCCCGAACGTCATGCATGCGGGCAA 578030 36 100.0 37 .................................... CGTCGATCGCATCATCAGCGACGTCAGTCGATGATGT 578103 36 100.0 38 .................................... GGCGCGTGCCAACAGCGCAGCCTCTCGACCTTCCGGCC 578177 36 100.0 40 .................................... TGTGGGTCAACGCTGCCGGACGCGCCAACCACTGCCTCCA 578253 36 100.0 36 .................................... GGCCATGTCGTCCACCATCTCAGCGACCGTCTCGGA 578325 36 100.0 35 .................................... TGGCCACTGCCGCGCAGACCATTCCCTCCGTGCAG 578396 36 100.0 37 .................................... GTTCCAATTCATCGAGCCGATGCCCACGGGATAGGTG 578469 36 100.0 37 .................................... CCGGAGTACCGGGCTGGGGGTTCCAACGGCCTGCCCG 578542 36 100.0 35 .................................... ACCCACAACAGGACGGTCGGGATCAAGGTCCGCGC 578613 36 100.0 41 .................................... GTGAGGTCTTAGGGTCGTCGGGATTCGGCAGCATGTTGGGG 578690 36 100.0 38 .................................... GGGCAGGACTCCTCGAAGCGCTGGGAATGGTCCACCAA 578764 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 77 36 99.9 37 GCCTCAACGAAGGGCTCCCCGGCAAAGGGGAGCGAC # Left flank : ACTCGCCGTGGAGCAGTTTCAGGGTGACTCCGACCCGGGCCAGCTGCCGGTGGATCTCGGCCCAGTCAGGCAGGGTGAACACGCTGACGTGCTCGCCCCGGCCGGGGAACAGCCGCCGATAGACCTCGGCGTCATCGAGGTCGGCGACATCATCCCAGTCGATACCCTGCTGATCGGCGACCTGAAGGACCGCGGCGACACTCTTGCGGGCCACGCCCTGGGAGGTGGCGATCGCCCGGCCTGACAGGCCTTGAGCATGGAGGCGGAGCACTCGCTTCGCCGGAATTCGACTTACCATCGGTGACAACTCCTTTCGTCACGTGCCTCTCACATGACGGGAGGAGCCTAGGCAGGCCGGTCCCCATCACCACCACGAATGGTCCCCATCCGCGCCAACCTACTCATCACTGGCTGGCCCCCACTAGCACCATCACCGGACCTCATCAGAGCAAATATTCAACTAGGCGCACCATGTGGCAGCGTCATGCAGGTCCAGGGCG # Right flank : CAGCGGTCTCGCGGAGCGGGTCCTGACAAGCAGTCCAGCACCCTCTCCGCGAGAGTCCATCGTAGCGCTGCACTGCCCGCGCACCTCGGTGGCTCCTGAACTCCCGGCATCCATCCACTGACAAGGCCGGATGAAGGCGCGAGTGGTTACCGGGAATCCGCGGAGCGGGGGACCTCTCGCATGGGGTCAGATGATCATCGACCCGTCTCCGACGATGTAGCGGGAGTGCCCCAACCATGTCACAGCCCGGTCATCCGCCGTCTTTGAGAGACCAAGGTCGCTGACGAGCACGGAGTCCTGATCGCGGTCCATGATGTCCTCCAGCTCACGCTGGAGGACGAGCACATGGCTGGGCGAGCAGTCGACCATGAAGACACTGAATTGAACTCTCAATCCGAACCGCTTGAGAGTCACAGCCATGTGGCCCCGTCGCTTGTCATCGGGGACGTCGTAGGCGATGAGATATCGATGACTGTCCTGTCTCATCGGACTGTCATTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGGGCTCCCCGGCAAAGGGGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 1252827-1248765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025198.1 Acidipropionibacterium virtanenii strain JS278 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1252826 28 100.0 33 ............................ GCACGTCGAATTCGAGGAGGCGCGCCATGCCGA 1252765 28 100.0 33 ............................ GACGGGCACATCCACCCACCGGCCAAGCGCGGG 1252704 28 100.0 33 ............................ GTAGCCGGATTTCTTGCTGATCCGTTCAGCGTT 1252643 28 100.0 33 ............................ CATCATGGCGTCCCGCTACGACGGTAAGAAGAC 1252582 28 100.0 33 ............................ CTCGACGCGCTGCCTGAGGGATCGGTGGTGCTC 1252521 28 100.0 33 ............................ CGCGCTCGCCGCCGACTACAACGTGCGCGGCTG 1252460 28 100.0 33 ............................ CACATGGAGCTGGTGACGAATGCCGAGAACGTC 1252399 28 100.0 33 ............................ CACTTTGCTGGGTCGTCAGAGGTCGAACGGAAC 1252338 28 100.0 33 ............................ CTCAGCCTTGGCGCGAAGGCGCTGTACGGGGCG 1252277 28 100.0 34 ............................ CCGCAGCCATCACAACCTCACCAGGTGAATATCA 1252215 28 100.0 33 ............................ CGAGAACCGTCAGTCTCCAGCATTCGACGCCAA 1252154 28 100.0 33 ............................ CCCATCATGACCACGCAACTCCAGCTATTCACA 1252093 28 100.0 33 ............................ CCGTGGGAAACTGAGTTCCCACGGCGGAAGGTC 1252032 28 100.0 33 ............................ CTCCGAGAATCCGATTTTGCCAGCCGAGGCGAG 1251971 28 100.0 33 ............................ CCTCATACCGCCACCCTCCCGGACAGTGGAGAG 1251910 28 100.0 33 ............................ CGCGGGCCAGACGGTCGGCGAGCGCCCTCATGG 1251849 28 100.0 33 ............................ CTTCCCGCTCCCAGGTGAGATGCCAGCAAGGCA 1251788 28 100.0 33 ............................ CATGTCGAGCTCGGAGGCCACCTGGTAGATGGT 1251727 28 100.0 33 ............................ CCATGATGCGCACATTCACCGCAGCACTGACCA 1251666 28 100.0 33 ............................ CAGCGCTTCCTGGTGTTGACCGAGACAGGCTGG 1251605 28 100.0 33 ............................ TTGTGAGCAGCACCCGGATTTGCCGCACCGGAT 1251544 28 100.0 33 ............................ CCCCGACGGCGGACCGCTCGGAGCGAGCGACTA 1251483 28 100.0 34 ............................ CCGCACATCCGGACACCCCCACCGATCCCAGCGC 1251421 28 100.0 33 ............................ GAGGAGACCAGATGGGCGGCGTGGAAGCATGAG 1251360 28 100.0 33 ............................ CGCTTGTTTGACCGGATGGCCGTCCCGGTGACT 1251299 28 100.0 33 ............................ CCGGTGGTCGGGTCAGGGTGGGCCTCAGACCGG 1251238 28 100.0 33 ............................ CCAGATGGAGGCGCACGGGGTCTCCACCCGAGG 1251177 28 100.0 33 ............................ CCGGACGCGTTCATCGTGTCGTAGCAGTTGCAG 1251116 28 100.0 33 ............................ CGGCGGTGGCGCCGCGTCGCCTCTCTGGCCGAT 1251055 28 100.0 33 ............................ CTACCTCGCGGCGATGGGTGAATCGCAGCGGCA 1250994 28 100.0 33 ............................ GTCACCGGACGCCGACGCATAGATCGGCGTCCC 1250933 28 100.0 33 ............................ GATGAATGCGGGGATGACGGTGTCCGCGCCGGA 1250872 28 100.0 33 ............................ GCAGTACAGGACGCAGGCGCACCTGTACGGGCG 1250811 28 100.0 33 ............................ AGTCCCAGCCGCATACGAAAGGCCGCCCGATCA 1250750 28 100.0 33 ............................ GATCTCGACTCCTCGTGGACAGGTTCCAATCGA 1250689 28 100.0 33 ............................ GATGCAGCGCCTGATCCTCGACGCGTTGACGGA 1250628 28 100.0 33 ............................ GCCGGCCCGCCCGCTCCTGGCGCCCTGGACCGT 1250567 28 100.0 33 ............................ CGCGGAGTGAGTGGTGTTGTCGGCGTAGCACAT 1250506 28 100.0 33 ............................ CGCCCCATCCTCACATTCATGTCCTCACGGTCA 1250445 28 100.0 33 ............................ CCTGTCAGGTCGTCTCACGGCCTCCTCCTTTCA 1250384 28 100.0 33 ............................ GCAGTCGGCCGCCGCACGCCAGGTCGCCGTCGC 1250323 28 100.0 33 ............................ GTGCACGTCGGTCTTGGCCCCCTGGCCGGTGTT 1250262 28 100.0 33 ............................ CGTGCTGGTGCTGCACACGACCGAGGGCAGTAG 1250201 28 100.0 33 ............................ CCCATCCCCGAGGAGATCGCCACCATGATCGCC 1250140 28 100.0 33 ............................ CGCCACAGACGCTCCTGTCGGAGGATGGCCAGT 1250079 28 100.0 33 ............................ CATCGAGGGCATCCCCGATCCTCCGATCAGCTT 1250018 28 100.0 33 ............................ CAGGCAGCAGATCGAGACCGTGCGCGTCGTCCC 1249957 28 100.0 33 ............................ CAGTACCGTCGCATCGAACAGGCCAACAAGGAC 1249896 28 100.0 33 ............................ CGCCATGGGGTCGATGGCTCCGAGCTGGCAGCG 1249835 28 100.0 33 ............................ CACTGCCAGCCGGTCCCCGTCGAAGTCGCGCGT 1249774 28 100.0 34 ............................ CAGCACTGTCGTCTACCTGTTGACCTGCGCCGAA 1249712 28 100.0 35 ............................ CCACCGAGATTGTCCATGTCGGCGAGAGCGGTTCG 1249649 28 100.0 33 ............................ CACGCCCTCGTCGGTGACGTCCTCGCCGGACAG 1249588 28 100.0 33 ............................ CTCCTCAAGCATGATCGGTCACCCGCTCGGGGT 1249527 28 100.0 34 ............................ CGCTCGGAGGAATTCACCGCGTGGCATTGTTTCG 1249465 28 100.0 34 ............................ TTTGATCGTCGGCATGCGTGCGGCGTTTGCTCAG 1249403 28 100.0 33 ............................ CTGCATCATCCCCTGTTTGAATTGCGCCAAGGG 1249342 28 100.0 33 ............................ CGGGGAAGCCGGGGACGTTGACGGCCAGCGCGG 1249281 28 100.0 33 ............................ CCGCTGCCATCCGCTCATCATCGGCAGGCCATA 1249220 28 100.0 33 ............................ CGACGCGGCGAACGTGCCCGCCGTCCTCCAGTC 1249159 28 100.0 33 ............................ CTCCTACGTGCGCTCCTACAACTTCGGGGCGAC 1249098 28 100.0 33 ............................ CCCGTCGATGCCGGTCTGGATGGTCTGCTTCGT 1249037 28 100.0 33 ............................ CCTGTCCGGCAAAGACGTCGGCATGGTCGCCGA 1248976 28 100.0 33 ............................ CAGCACCCGCAGCATGGCGTCGACGTCGGTGAC 1248915 28 100.0 33 ............................ CAGCACCCGCAGCATGGCGTCGACGTCGGTGAC 1248854 28 100.0 33 ............................ CTCTGGGAATTCATGGAGCTCGCCGACGAGGTG 1248793 28 92.9 0 .......T..............C..... | A [1248767] ========== ====== ====== ====== ============================ =================================== ================== 67 28 99.9 33 ATCCGCCCCGCGTATGCGGGGGTGAGCC # Left flank : GCAGGGAATAACACACCTTCCCATTCAGATATCCACGATGTGTGCGCCGCTCTCCTCTCCGAGGCAAAGGGATTCAGCGATGAAAAGTGCGACGGCGGCATGGACAGACCGGAGGCTGTGAAGCCAGGGATCAATGGCCTCGGAAGCCCCGAGACCAGACAGACCCGTTCTGTGCTCGCTCCCCTGGCGATGTACGGCATAGGGCTCCTGGGGAGCGGACCGGTGCGTGGTCTTGGCGTGACGCGATCCGGAAAACTGGTCCTCCCGCTGCCGACAACGCCAGTGACGCTGAATGAGTTGCGCGCAATGACGTATGTGGGTGCTGTGCATCCGAGATGGCCTTGGGCGGTTGACGGCCTCGACTGGGTGTACAGCGCAGAAAAGAAGAAGGTCCCTGCGGCGGGAGACAAAGTTTTCCAGTGGCTCGGAGGACCGCGCTCGCGCAGGGCTAGTGAGGTCTGACAGGGGGCCACAGCCAGTATCGCCCGTAGTCAGTTAGT # Right flank : AATCGAGTCGATGCCAACTGGTCGGCGCCCGCCGAGCACGCCGGTGGGCGGATCTGCTACCAGGGGGACGTCAAGGGCCTGTGTTCCTCGGAAGCCCTCACCGGGAGCTGCCTGGTCATCTCGGTCACATCCTCAAGGACGAGGTCCGGGTCTACCGGCGGCATCGCGATCAGCCACGCGAAGCTGCACACCCTCCGCGACGTCTCGGCGAACCTCCCACTGGGCGTGCTGTGCGGGGTCGCCGGATCCGGGAAAAGCTCCCTCATCGACGGCTGCATGCCCGCCGACGCCGGGGCGATCGTCATCGACCAGATCCCGATCAGAGGCACGCGGCGCAGCAATCCGGCCGACGTCCACATGCTGGACGCATCGTCCCGACCGGCCGTGTGTGGCCGATAGGCTGCCCCACTGGTCCGACCGTTGCCGGGCCCTAGGAACGCAGGAGGAAGACGCGTATGTCGTTGCTGGTCAAGAAGGGCCTGCACCAGGTCGAGGAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCGTATGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //