Array 1 40564-41630 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP075276.1 Klebsiella pneumoniae strain RGF172-1 plasmid pRGF172-1-tmexCD-inc map unlocalized		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     40564	    29	 100.0	    32	.............................	TAACTTTACCCCGGATCCTGATGAACCTGTAC	
     40625	    29	 100.0	    32	.............................	TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
     40686	    29	  93.1	    32	............CA...............	AGGTATTTGACCTCATCCAGAAAGGCACAGAC	
     40747	    29	  93.1	    32	............CA...............	GCACCCTCACGGATACCTTTTGCACAGTGTTA	
     40808	    29	 100.0	    32	.............................	TTACCAATGGGGAAAAATCTTCATTTGTAAAT	
     40869	    29	  89.7	    32	.....T......CA...............	CGAAAACGGCAACCTTCATAAAAACGTCTTTT	
     40930	    29	 100.0	    32	.............................	CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG	
     40991	    29	  93.1	    32	............CA...............	AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC	
     41052	    29	  93.1	    32	............CA...............	AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG	
     41113	    29	 100.0	    32	.............................	TTAATGTTTTGTTAATTTATGAGTGTGGTGAT	
     41174	    29	  93.1	    32	............AC...............	AGCAAATCGAAAATCCGGCTGTTTGAAAAATG	C [41185]
     41236	    29	  86.2	    32	............CT.A............C	CATGAGCCTGCGCACTCTGACGCGCACCTGCT	C [41247]
     41298	    29	  93.1	    32	............CA...............	TGAGGCTGCTGACGGAGAATTGGGACCTGTTC	C [41309]
     41360	    29	  89.7	    32	............CAC..............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
     41421	    29	  93.1	    31	............C..A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
     41481	    29	  86.2	    32	...C........CA............T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
     41542	    29	  93.1	    32	............CT...............	GGCATGAGCGAGAACCACTGCGAGAGTGTGGT	
     41603	    28	  79.3	     0	..........A.CA..T.....-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        18	    29	  93.1	    32	GTATTCCCCCCGTGTGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA

# Questionable array : NO	 Score: 5.32
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGTGTGCGGGGGTTATCGG
# Alternate repeat :   GTATTCCCCCCGCATGCGGGGGTTATCGG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [3-31] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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