Array 1 889-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAED01000045.1 Gordonia amarae NBRC 15530, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 888 36 100.0 35 .................................... GTGTCGGTGATCAATCTGTCAGGTCTGCCGGACAC 817 36 100.0 39 .................................... CCGCGTGCGTATCAGGGTGCGCCACAACGCATTACGATC 742 36 100.0 38 .................................... TGGAAGTGGGTAGCGGAGTCGAAGGTGGAGGAAGCACG 668 36 97.2 36 .....G.............................. GAGCGTCAGCAAAGCGAACAGGTTCATTCGGATAGC 596 36 100.0 38 .................................... GAGGTGAAGACGACGGTGCCCGCCAGGTAGTCGTCTTT 522 36 100.0 39 .................................... GATCAGCGCCGAAGTCACACACTCCTGAGACCCGGCGTC 447 36 100.0 39 .................................... CGGCGGGGGCGGCGGCTCGGGGGGGGTCGTTACTCCAGG 372 36 100.0 38 .................................... TTCGGTAGCAATCCGGATGAGTCGACGCCGGAGCGTGC 298 36 100.0 38 .................................... GTGCCACCCGCGCGGCTCCGCCGTTCGGGGTGAGCAGC 224 36 100.0 39 .................................... ACCACTCCGGATGCCACGTCGACTCATCCGCACTGAGCA 149 36 100.0 39 .................................... CTGGGAAAGGCAGCGGCAGCGTCACACGGCCCGCGACTG 74 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 99.8 38 GCCGCAATGGAGCCCGGTCATTTCGACCGGGAAGAC # Left flank : TGTCGGTAAGAACGGCGCGTCAGCGGCGATCACGCCAGTGGAGCGGACCACCCCTTACACCCTGATCCTGGGCCTGCTCGAAGGGAAGAAAGCCACCGGCGTCGCTGACGTGCTCATCGACCACCTGCATGGGCTGCCCGGCATCATGAGTCAGGGCCTGACCTGGGGATCAGGGCACGGAGATGGCTGAGCATGCATCGGTGACCGTGGCAGCGGATCTGCCGATCTACTTCGCCCACCCCCGCTCGCCGCGGGAGCGGCCGATGAACGAGAACACCAACGGACTGATCCGCGAGTAGCTGCCCAAAGGCGCCGAGATCACCTCTCATCAGCCCTACCTCGACGCTCTCGCCCGAGAACTCAATGAACGACCCCGCGCAGCGCTCGGTTTCTACACCCCTCGCGAGAAGTTTGAAGCGTTACCCAACGCCAACGTTGCTTCCGCAGGCTTGACACCGCCCTGACCTTGTCGACGTAGGCGACAGCGACCGTCAGTTCTC # Right flank : CTGCCGGTGCTGGTGCTCGGTCCGCGCCCCGATCTGCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCCCGGTCATTTCGACCGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 56-612 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAED01000028.1 Gordonia amarae NBRC 15530, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 56 36 100.0 40 .................................... CCAGCCTTTTTGGATCGACGGAAAGACTGTAGGCGCTAGT 132 36 100.0 37 .................................... GCCATCTGTAAGGCGCTAGGCACCGCACTACTACCCG 205 36 100.0 35 .................................... TCGGTGGTCGGTGTTGGTGTCGCTTGGCATGACCT 276 36 100.0 41 .................................... CCGAAGACCCGGAGTTCTTCGCACTGTTCGCCGATGCCGAC 353 36 100.0 38 .................................... ATGTAGCCGAGCAACTCGTCGACGCTGTCGATGTCGGC 427 36 100.0 41 .................................... CAGCTTCCTGCAGAAGCCCCGGCACCCGAGCTGTCTCCTCC 504 36 100.0 37 .................................... TTCTGAGCCGCGCATCGAGGTCAAGTGGGCCGACATG 577 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 100.0 39 GCCGCAATGGAGCCCGGTCATTTCGACCGGGAAGAC # Left flank : CATTTCGACCGGGAAGACTCGAAGCCCGGCGCAGACCTCGTGTTCGGCGTCTACGG # Right flank : CCGCTCGCGAGATTCACCCGTTCCGACCAGCGGAAACAGGGCACCTCGCGAGAGGTGGTTGGTACGGCATAGCCAGTCCTACGTTACACCAAGTATGAAGTTCTCAAACAACGCTCTGACCAGCGCGCGAGCACTGTCCAGGAAGTTCGACGCGGTCGGACCGCTCGCGGGGGATCACAGGACTGTCGTACCTGATGTGGGCAACGTGCGAGGCTTCCCGAGCTGGGTAACGGCTGCGGCACTGCCCGTGGTCCCGAGGTCGATCATCACGACGGAATCTTCCCGATAGTCCATGACTACATGGATATCACTTCGCCACTGAACCAGTTCAAGCTCCGACAGATCACAGAGGAATACTGAGTATTGCAAACGAGTTCCGTACGCCTCCATGACCTTACAGACCTGCCGCAGCCGGCGAGGTTCGCAGATGTCGTATGCGATGAGGTGTCGCCTTCTGGCCATGGCCACTCACCTCGTGACCATCGGGGTGTACTGCCGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCCCGGTCATTTCGACCGGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //