Array 1 174211-175200 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSXJ020000005.1 Escherichia marmotae strain H1-003-0086-C-F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174211 28 100.0 32 ............................ ATAACTGGAAAGTCGAGGGCTTAGGCAGCAGT 174271 28 100.0 32 ............................ AAACCTCGGCGCAACGGCACCGGCCACCGGCG 174331 28 100.0 32 ............................ TGCACCCTCAGCCGCGCCCGCGCCGCGTTGCG 174391 28 100.0 33 ............................ CGCCAGGTAATGGCGCAGGGGTTGACGCTGCCT 174452 28 100.0 32 ............................ TCCAGATATTTGAAATACTCTACACCGGCATC 174512 28 100.0 32 ............................ GGAACAAAGACGCGAGCAAACTGGAGAGCAAA 174572 28 100.0 32 ............................ CCACAGAGCTTGAGTTATGGGCTGCGTCTGTT 174632 28 100.0 32 ............................ ACTAAATAAGTGGTGTCGTCGCTGCCGCCATA 174692 28 100.0 32 ............................ TGCGCGGGCGTATCGCGGCACGTCTGCGCAAA 174752 28 100.0 32 ............................ CGGAAGTTGCGTCGCGGCTGAGTCCAAACCGC 174812 28 100.0 32 ............................ TAAAATCATCGCGGCACAATAATGCGCAGTCT 174872 28 100.0 32 ............................ TCTTTGAAACCGCTGAATACGCAATGATTGTT 174932 28 100.0 32 ............................ AAATATGTGGTGGAGAGATACAACAGGGCTAT 174992 28 100.0 32 ............................ GCATGAAAAAAGCGTTCTCACTTTGGCGGGGA 175052 28 100.0 32 ............................ GAAGAAAAAACAGTGGTACTACCGCCCCGCAG 175112 28 100.0 32 ............................ TTCAATAGTGTCCGCAATATCGTCAACGGTAA 175172 28 92.9 0 ....................T...C... | C [175195] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAAACCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 189448-190077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSXJ020000005.1 Escherichia marmotae strain H1-003-0086-C-F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 189448 28 100.0 32 ............................ CAGCTCAACAGATCGTGGTTTTTATCTGTCTT 189508 28 100.0 33 ............................ TGATACCGTGACACTCAATTCCCTCGCGAGGAA 189569 28 100.0 33 ............................ CATCAGGGATGCCGCGCGTTTTTGCTACGTCAG 189630 28 100.0 32 ............................ TCGCCCTGCGGAGTGCGGTAGTAGAACGGCCC 189690 28 100.0 32 ............................ AAGCGCAATGGACGTCCCCGTCGCACATCCCA 189750 28 100.0 32 ............................ ATCAACGATTGACCACGGCCCAAGCGCAATGG 189810 28 100.0 32 ............................ GTCGAGCTGATCGACTTATGCCCCATCAGGCT 189870 28 96.4 32 ...........T................ TCATCCAGCGTTTTTTCTCGGTGATCAAATGC 189930 28 96.4 32 ...........T................ GTAACGTTATACGAGGCGAGCGCCGCAGATAT 189990 28 96.4 32 ...........T................ TGACCGTATTTTTTCTCCCAGGTCTTTTTGCC 190050 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //