Array 1 153055-153752 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPT01000004.1 Haemophilus parainfluenzae strain C2006002596 C2006002596_S9_ctg_1068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 153055 32 100.0 35 ................................ TTTAAACGCAAGGTGCAACATATTTTCCGCCGGCA 153122 32 100.0 33 ................................ TTAAAATGTTTGGTATCAATTTTAGACCCACAA 153187 32 100.0 35 ................................ CTGAAAATGTTTTTCAGGCATTTGTTCGATTTCTT 153254 32 100.0 36 ................................ TCCATATCTACACTATGACAGTCATAGATATAAAAC 153322 32 100.0 34 ................................ TCTAATGCTAGTTTTGTTGTTGGTTGAGGTGCTA 153388 32 100.0 33 ................................ TCTGTCAGCAATGGATAAATATGGTAATCCTTT 153453 32 100.0 34 ................................ CGAGCGGGAATGACCGCACAATTCGTAAAAGGTC 153519 32 100.0 35 ................................ TCAAAGTTCTGAATAAAGTATAAAGTGAAATTGCT 153586 32 100.0 35 ................................ TTCGTAATACCCATATTCTTTAATAAACCCAGAAC 153653 32 100.0 36 ................................ TCGTTGATCTCCGCAAGCCGTCAAGATACGACCGAA 153721 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGATGAGATAAGTCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGAGCACAATATTCAGTATTTGAATGTGATGTCACACCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACTTACGACCCCACGTGTGACAGTCTGCGTTTTTACCACTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTTATTTAGTTCGCTAACCTGTTGTTCTCATTAAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACGGTGTTTAATACACTGATTTTTCTTGCTTTTTTAAGTAGGGA # Right flank : CATGGAGAAAGGAAAATTTTTCACATCTAAATAGGCTGCGCCTCCAGGCGGTTTTACGTTGCAATAAAACTTAATAAATTTAAATAGTATAATATTTGCCGCCCTCTATCTCTCAAGCCAATTCATGCCCAACAACATTCCCCCTTGTATTTCCCCCTTATTCGCTCTAGACTATTCGCCATTTTTAGCTTTCATTATTTACAATTATGCGTGTTTCTGACTTTCATTTTGACTTACCTGATGAGCTGGTTGCTCGTTATCCTAAAGAAGATCGCTCTTCTTGCCGTTTGCTACAACTCAATGGCGAAAACGGGGAAATTTCTCACCGCACTTTTACCGATGTATTAGATTTAATCGATGAAGGTGATCTGTTGATTTTTAACAATACGCGTGTAATCCCAGCTCGTATGTTTGGTCGTAAAGCCAGTGGCGGAAAAATTGAAGTGTTGGTGGAACGTGTTTTAAGTGTACATCATTTCTTAGCGCATATTCGCTCATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 315022-313666 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPT01000001.1 Haemophilus parainfluenzae strain C2006002596 C2006002596_S9_ctg_1062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 315021 36 83.3 30 ..AA..A.AT.T........................ TCATCTCTAACCAAGTCCACGCTATACAGC 314955 36 100.0 30 .................................... TGATTGCCAACGAGCATTATATTGCTGGAA 314889 36 100.0 30 .................................... GGGGTGCGTGGCTAAGAGATACGGTATTGC 314823 36 100.0 30 .................................... ACGTGTTGCTCAGTATTGGTTGGAGGCTTG 314757 36 100.0 30 .................................... GCCCTTTCCCTTGAATTTCAGTACTTGCTT 314691 36 100.0 30 .................................... AACTTGTTTATGCTTACGCAATGTGGATTA 314625 36 100.0 30 .................................... TTAAAAATTGATGGTGAAAATTTAGTGATT 314559 36 100.0 30 .................................... GGAAATTGAATCGTTAGCCTCTACGCGTTC 314493 36 100.0 30 .................................... GTCACCTGGATTAGGCAAATCATTTTGTAA 314427 36 100.0 30 .................................... AACATAGATATTAAACTTCATTCCTCCAGT 314361 36 100.0 30 .................................... TCCAAATGGAATTGGTTGCCTTGCCAATTT 314295 36 100.0 30 .................................... TTTAATGATTTTAATATTTCACACAAAAAC 314229 36 100.0 30 .................................... TGAGGTATTGAAGAAACTTTATGGAAAGGC 314163 36 100.0 30 .................................... AAAAATTATCGCTAACTGACTTGTCACAAA 314097 36 100.0 30 .................................... CGAGTGTATATGCTATCTCTGTGTTTTTGA 314031 36 100.0 30 .................................... CCGCTAAAGCTGCTTAATACGAGGACAACA 313965 36 100.0 30 .................................... AGAAGGTGCTGAAACTATTGAAGAATTAAC 313899 36 100.0 30 .................................... TGATTAAAGAGGGCTATTTAGCACCGTTAA 313833 36 100.0 30 .................................... GTTCGGCAGTGTTAGAAGTAAATGGCGTTG 313767 36 100.0 30 .................................... AGTCAGCCAACCGTAAATCAGTGGCTAAAG 313701 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.2 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : GCCTTACTATTGGTGAAGTGAACGGTGATGAATTCTGCGTGAATTTAATTCCTGAAACCTTACATAGAACTCTAATCGGCAAACGCCAAATTGGCGATTTAGTAAATATTGAAATTGATCCACAAACTCAAGCGATTGTGGATACAGTGGAGAATTATTTAAAAGCAAGAGGGATATAGTTAATTAAGATTACCATAAGGAGGAAATATGTTTAAAGATGAAGTTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGCCATGTTTAATGTGTTTTTTCTATTTCCACTTTTAATGGTTTTTGTACTGATTGGCGTTATTAATGGTGTAATATGGAACGTACTTTTAGGTATTGCCTTTACTTGCCTCGTCTTTCTTATCTTATTTAGGATATTAATCCATTTTTTATATAAAAAATGGGAGAAAGAGCATCAGAAAAAAATGCAAGAAGAGAATGAAGTTAAATACATTATTATTAAATAGTAAACTTATACTGTATT # Right flank : AGGGACGGCAAAAAGCCCCATGCCGTAAGGTTTAGGGGCTTTTGTTTTATCTAAAAAAACGGTTAAAAAAGCAGTAATTGATTTGAATTGACCTTTTTTTCTTGCAGTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATTGATCCCTCTTCAGGTAAGTGTGCGACGAGTCTTTTATGATGTTTTTCTAACGCATCTCGCCCTTTAATAATTCGAGTATAAATAGAAAGTTGTAACATTTGATAACCATCTTTAAGTAAAAATTGACGGAATTGGTTTGCTGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCAAATAAAACGATCATACGCATAAAGACTTCCTCACTCATATTGGTATTCCTGTAGTGCATCGATCTCTGGTAACTGCAATAATGTTGCATTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //