Array 1 101370-100670 **** Predicted by CRISPRDetect 2.4 *** >NZ_UINX01000004.1 Escherichia coli strain VREC0627, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101369 29 100.0 32 ............................. GACTAACTATGGCCCTATCCATCTCTGATAAG 101308 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 101247 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 101186 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 101125 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 101064 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 101003 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 100942 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 100881 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 100820 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 100759 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 100698 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128168-126918 **** Predicted by CRISPRDetect 2.4 *** >NZ_UINX01000004.1 Escherichia coli strain VREC0627, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128167 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 128106 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 128045 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 127984 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 127923 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 127862 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 127801 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 127740 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 127679 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 127618 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 127557 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 127496 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 127435 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 127374 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 127312 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 127251 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 127190 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 127129 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 127068 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 127007 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 126946 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //