Array 1 37728-38955 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCT01000019.1 Pseudomonas aeruginosa strain W15Dec14 IPC826_19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37728 28 100.0 32 ............................ TGCAGGGTGGCGGAACCGGCTGCTTTGCCGCC 37788 28 100.0 32 ............................ AACTCAAAATTGCCCAATCAAACCGCGGGATA 37848 28 100.0 32 ............................ GCGTGCAGCAGATAGCCCTCAAGGAAGCTCAA 37908 28 100.0 32 ............................ AGCAACACCAGCAGCAACGATTACAAGTGGTT 37968 28 100.0 32 ............................ TATAAGCATGGGTCTGATGTAGTTGTTCGAAC 38028 28 100.0 32 ............................ AGCCATTTCGGCGAAGGGACTGAAGAGGGCCT 38088 28 100.0 32 ............................ TTTGGTGAGGCTTGCGCTCCCTGGGTGTTCGA 38148 28 100.0 32 ............................ CAGGAACGTTTGCTCGCGCTTTGATCTCAAGC 38208 28 100.0 32 ............................ AAGATGGTCGACGTGCTGATCCTGGCAATGCG 38268 28 100.0 32 ............................ GTTCCATATCCAACACCGGGACGGGAGTCCGA 38328 28 100.0 32 ............................ ATCCTGATATCCGGCGCTGCTTTGCCGACTAT 38388 28 100.0 32 ............................ TCCCGAGGAAACGCCATGCACACCCTCAACCT 38448 28 96.4 32 .................T.......... TTGCCGGTGGCCGTTTCGACGATGTGGAAGAA 38508 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 38568 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 38628 28 100.0 32 ............................ TTGCGGATCCGGCGGTAGACGACCATCCGCAC 38688 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 38748 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 38808 28 100.0 32 ............................ TCGACATGGCGACGGCTCTTGAACGGTTCTAT 38868 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 38928 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAATGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGACGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48649-47479 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCT01000019.1 Pseudomonas aeruginosa strain W15Dec14 IPC826_19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48648 28 100.0 32 ............................ TACATGATAGGAAACACTGTCACCCTGGTGGT 48588 28 100.0 32 ............................ ACTTACGCGATGGGGCTGGATGATTGGGGCGC 48528 28 100.0 33 ............................ CCGACGATGCGGTCGTGCTGGGCGACGGTCATC 48467 28 100.0 32 ............................ TTGAAGTAGTCATAACGGTCATAGTGCTTAGA 48407 28 100.0 32 ............................ TTATTGGTCGTGGTCGCAGGGAAGGCACTCCC 48347 28 100.0 32 ............................ AGTTCCTCTATGGTTCCGGTCCGGTCGCGCAC 48287 28 100.0 32 ............................ AGGGCTCCATGGACGGAATGAGTCGGCCCTCC 48227 28 100.0 32 ............................ TCCAGGTGCTGGCAAACGTCAGCCCCTTTGCA 48167 28 100.0 32 ............................ TGGAAACACCGAGCGCTGACGCCGATCTCGGG 48107 28 100.0 32 ............................ TTCGAGTCGTAGCGTCGTCACGGCCGTCGATG 48047 28 100.0 32 ............................ TGGTCGATATTCACGACCGGAGACCGGTGGTG 47987 28 100.0 32 ............................ ATCTTGCGCAGGGCGTAGACGCATACCAACCA 47927 28 100.0 32 ............................ AAGTGCAAGAGAAGTGTGCGATTAGCGCCGGA 47867 28 100.0 32 ............................ CACCGGTCCCACCGTCACCGCCACCCGTTCCG 47807 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 47747 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 47687 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 47626 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 47566 28 100.0 32 ............................ AGTCCGCCCAGGTGCTCGAGTACCGTGTCGAC 47506 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCTACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 274227-273222 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCT01000002.1 Pseudomonas aeruginosa strain W15Dec14 IPC826_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 274226 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 274165 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 274104 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 274043 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 273982 29 100.0 32 ............................. GCGCAGCTCGATCCTGAGCAGGTCGATGCGTA 273921 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 273860 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 273799 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 273738 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 273677 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 273616 29 100.0 32 ............................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 273555 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 273494 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 273433 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 273372 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 273311 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 273250 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTCGACTGTCGGCACCTTGCTGGTGTGGGTCGGTGAGGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 283579-282819 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCT01000002.1 Pseudomonas aeruginosa strain W15Dec14 IPC826_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283578 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 283517 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 283456 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 283395 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 283334 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 283273 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 283212 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 283151 29 100.0 32 ............................. CTCGCGGACAACACCCCGAACCCCTACGTCGG 283090 29 100.0 32 ............................. CTGCGCGTTCACGCCGAAACCCTTGGCTGGGT 283029 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 282968 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 282907 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 282846 28 79.3 0 A..........A..C.....-..A....T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //