Array 1 1219331-1220080 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 1219331 25 100.0 41 ......................... GTAAGTAACGTTGGCAGTTACGAGGTAGCCCCGCGGAGCCC 1219397 25 100.0 37 ......................... TCTCCTCAAGCTTCTCCGCCAGTTGCCCGATCCTCTC 1219459 25 100.0 40 ......................... GAGGCACTGCTGGAGGCGGCCAGGGTGCTCAACGTCAGCG 1219524 25 100.0 42 ......................... GCTCATTACGCCTCACCCACCAGCAATGCGGCTTGGTAGACT 1219591 25 100.0 48 ......................... TTCGAGCAAATGAGCGTGGACGAGCTGCGGCAGGAAGTGCTGATGTGG 1219664 25 100.0 42 ......................... AAGTTTCACTCTTTCGAGCTCGTCGGTCGTCTTCTTTAGTAT 1219731 25 100.0 38 ......................... TTACGTATGAGTTCATCGACACCGGCAAGCAGGTTCAC 1219794 25 100.0 38 ......................... ACCAGGACCGAGAGCCGCTGCTCCAGCTCCGGGCTCAA 1219857 25 100.0 42 ......................... TTCGGAGGGATTTCCCAGCGGTTGCGACGTCTATTGCACGGA 1219924 25 100.0 39 ......................... TTACTCGCCAAGCGCTGTGAAAGGCTCGGCGCAGTGGGG 1219988 25 100.0 43 ......................... GGATATACGCCACGGAGGAGGTCGCCAGGAGCCTCGGCTCCGC 1220056 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================ ================== 12 25 100.0 41 GAAGCAACTGTGAAAGCATTGAAAG # Left flank : AGAAGGATAATCGAGCTGGCATCCAAGGCGTCGGGCGTCGAAGTCGAACTACTACCACCCAAAGAGGTCGTAGAAGAAATAGTCAGAACCTACGGAGCAGGAGCATGGAACCGTCAAGGCGTGGCTCACCCAGCGGCCCAGGAGTACCTGCGCGGGTACCTGGAGCGCCTCCTGGTAAGACTCTCCCCGTAAGCTCAACCCTCGGCGAGGGCCACTTCTACGCGAAGACCGGCGGAGACACCTCCGCGCACTCACGGCTCATGGGCTCTTTTCTACAAATTCCCGACAGAGGTCGGGAATTCGATTTTCTGTTTACGAATCCCTCTCGACGGGAAGAATCCCTGTTGAAAATGCCTCCCGTAAAATCCCGATCTCTGTCGGGATTATCTCGTGTTTGCTTTCGAAGCTTCTCATGCGTGAATTTTGTCAAAGAGGCAGTTTTGCAGACTTCGACTCATTGAGAAAAGGATTTATAGACCCTCAACCGTAGAAAGTGGTCG # Right flank : GGCTCGTGCTCGCCGTGTAGCTTCCGTTACTGGTCTTCGACGCGTTGGCTCTGTCGTGGCCCGGAGGCTTCGCGGTCTCGGTGGGGCACAAGGCTTTGGGGCGTCCTGCTGTCGAGGAGTGGCCTGGACGCGGGTAGTCTTTCTGCGCGTCGTGGTGTTTGCTTTTCCCCGCCCACCCTGGAAAAAGTTGTTTTCGCGTGGAGGGCGAGTAGGACCGCGTTGTGGAGTGCTGCCGCTGCTCTCACCGCGGATGCCGCCGCTACTGGGGCGTTGGAGGCGCTGGGCGGGAGGCCTAGCTTCCCGGCTACTCTGCGCAGGGCGTAGGCTAGGAGCGCGAGGAGTAGGATTACGAGAACTTCTCTCAGGGCTAGGAGGAGGGGGTTTCCCAGGAGGGCGGCCGTGTTGGGGTTTGCCTCGTAGAACGCCCCGGTGGAGAGGGCGGCGTATGTCGAGGCTATGTCGCAGGCGCTCGAAGCGGCGTACACCGATACCCAGAACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCAACTGTGAAAGCATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 2 1227253-1228098 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 1227253 24 100.0 33 ........................ AGGGTGGCTTGATGGTGTGATCCACAACCTTGC 1227310 24 100.0 36 ........................ TAAGGACGTCGAGACTATGGAGCCACTCGCCTGTAT 1227370 24 100.0 48 ........................ TTGCACGGGGCGACCACGCCGATACCCGGTATGGCGACCACGGTTATT 1227442 24 100.0 38 ........................ GCGACGCCGGGCGAGGCGATGTGGGCGCCGAAGGCGCT 1227504 24 100.0 42 ........................ CGAGCTGGAGAGGCTTGCGATAATCGGGGCAATAAGCGATTT 1227570 24 100.0 37 ........................ ATGTAGCAGGCTACTGCGGAGTCGCGTCCGCCGCTAA 1227631 24 100.0 42 ........................ TCGCGAGATCCAAGACACTCAGAACTTGGTTCAAGCTTAATA 1227697 24 100.0 39 ........................ GGTGACGGGAAGCACAGGGTCTTCGAGTTCGTGGGCTTG 1227760 24 100.0 34 ........................ GCGCATATGCGGGGGGACGGAACCGACTAAACGT 1227818 24 100.0 45 ........................ TTGAACGGAGCAGGCGGGGCGGGGTGAACCGGTAGGTTTTGGGCG 1227887 24 100.0 46 ........................ GGCCCTCCAGAGGGAGGGCATACTGCCGCCTTAGCCAAGCTCCCTA 1227957 24 100.0 31 ........................ TCTGGCATGGTTGCTAGGGTAAGATCCGTTC 1228012 24 100.0 39 ........................ TGAAGAACATAAACGAGGCTATACTAGGTACTAGCGCGC 1228075 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================ ================== 14 24 100.0 39 CTCTTAGTCTTGCTGATTTTGAAC # Left flank : CTCGTATTCACCGCGACGTCCGGGTAGCTGGCAAGGCCCGCCGGCAAGCCGTAGTACCTAACGTAGACGTAGAGCCTCTCGTCCGAGTAGAAAAACACGTAGTACGAGCCGGGGCTATCTATCCTCAAGGAGACCACGCCGTAGCCTGGCACGCTAACCACCCTCAAAACCTCGATGTCACTACCCCCGCGCGCGAGGAAATGCTCACACTCCTCGGCAGTCGCCAGGTAAGCCACGGCCGGCCACGGCTGATGACTCACGAGCACGACGTACGCCGGCGCCGCGGAAACCCTAATGCTGTAGTAGCTTATCGAGCGAGGAAGCAGCGAAACCCTCTCGGCGCGCACGCATCGAGCTACGAGTAGAAGCAGGACTACCGCTACAAGCCCAACCCTAAACAACCAACGCGAAACCAGCAAACACCCCCACCTCGTGTGTATATCGACACAAACCTCTGATTTTTGAACACATGGCGTTGCCAGCCCTACCATCGCGGTTCG # Right flank : CTGAGGGGTTTGTGGGAGCCTTTTCCCGCAAATCCGGGTTTTATTTCTCTGTGGAGGTATAAAACGTTTTCTGTTCCCTTCTTCCCATTGGGAACAAATCCCCGAAACACTTTTATAAATGACAGCGTCATATCAATTCGACGGGAAGACCCCTCAGAGGAAAAATTCCAGTAAAGCTTTTACCCTTGACACTGTCAAGGGTTTATAAGCCTTCCCAAGCGGGGGCTTTAAGGGTTGAAGCTGGGGCTGGGGAGGCTTGCCTGGAAGGTTTTGTCTGGTTCTACGTTGGTGAGGTTTGTTTGTTGCGTGTGGTGTGTTGTTGAATTGTTGTTGGCTGGCTTGGGGGTTGTGTTGTTTTTTCGTTGTTTTTCGGGTTACCGCGCAATCTATATTAGGATGCTTGTAACTATATTGTCGTATGTCGGCGCCTCGTCTATCTGAGAAGGAGATTCTGGACTGGGGCGCTAGGATAGGCGTTTCGGCCCGCGTCGAGAACCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTAGTCTTGCTGATTTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1249999-1249450 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 1249998 25 100.0 37 ......................... AGTACGAGCGCGTGCTCGACGGCGAAGTTGACGCGGT 1249936 25 100.0 43 ......................... ATGAATCTTAATGTCAGTTCTCTGTCACATAGAACTTCTCTCT 1249868 25 100.0 41 ......................... CGCCGCGAGGCTGAGTATAGCCGCCTTCACCATGTCTTGGG 1249802 25 100.0 38 ......................... TATACAAACGGGCGGGGGCGGACGTCTGGCTGTTCGAG 1249739 25 100.0 39 ......................... CTGTCTAGCGAGAAAATTATCACGAAATTTTTAGGAAAC 1249675 25 100.0 39 ......................... AGGGAACTTCGTAAAGCTCGAGCCGGAGAAGCCTAAAAG 1249611 25 100.0 43 ......................... TCCAGCGGGGTGCCCCGCAGCAGCGGCGACCAGAGCGCCGCCA 1249543 25 100.0 44 ......................... AAGGCCGTCTCCGGTGTATAGTAGTGCAAGCTTTACCGCCCTGA 1249474 25 96.0 0 .................G....... | ========== ====== ====== ====== ========================= ============================================ ================== 9 25 99.6 41 GAAGCAACTGTGAAAGCATTGAAAG # Left flank : GTACGTCGAGAAGGGCGACATAAGGCTGACCTCCAGGATAGCGGGCATGAACATAGACGAGTTCAGGGAGCTCCTCAGGAAGGCCAGGATCCCCGTCGTAGTCTAGCGGCCCGTTGCCGGGCCACACGGCGGAGGCCTGGAGGCCTTCTCCGAGAACAGATCCCCGGGGCTCGAAGAATGACGATGAGCGGAGCAACCTGAGGGGACCTTGCCTATAGAGGGTGGTTTAACTTTGATCGCTTTTACAACAAAGAAAACGTGAAAAACCTCCCTACAAATTCCCGACAGAGGTCGGGATTTTGATTTTCTGTTTACGAATCCCTCTCGACGGGAAGAATCTCTGTTGAAAATGCCTCCCGTGAAATCCCAATCTCTGTCGGGATCCTCCTGTGCCCGTTTTCGAAGTTTCTCTTGGGTAAACTTTGTCAAAGGGGCAGTTTTGCATAGTTCGAAACAAAGAGAAAAGAATTTATAGACCCTCCGCTGTGAAAAATGATCGG # Right flank : TTTTAAGCCTGTGCGTGTAGTGTACGTGGGGGTCTGGGTGGCTAGGGTTGGGAGGGTTAAGGCGAGGAGGGTTAGGGTTGGCAGTGTGAAGGGCTTCCTGGGTGTTGGGCGTGGCTGTGAGGGTAGAGGCGGGGGTAGGTCTGAGGAGGTTGTCGCCCTGGTGAACAGCGGCTACGACGCCCCAGCTGATGGTCCCGGTCGGGCTTGCGAGGGTTTTTGGGGCTTTGGCCCCCGCCTGGCGACGCGCGGGAGGAGGTGTTCGAGACTGCCGGTGGGCCCCTGAGGGTGTGGGTTGCTAGGCGTGCGGCTAGGGTTCACGTGGTGGCGGGTGGCGCCGAGTCGAGGGAGGTGGACGTCGTTGTCTCGCCGCTGGCGGACGAGCCGCTCATAAGCGACGTCTTGGCGGGGGAGCTCGAGATAGCGGTCGAGGACTTCGCGAGGGGGCTTTGGAGGTTCAGGTGGGAGCCCAGGGAGGTCCTGCGGGAGAGCTAGAGGAGGCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCAACTGTGAAAGCATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 1252258-1252970 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 1252258 25 100.0 41 ......................... CAACGGTTTGCTTTGCACCGCGACCTTGACTTTCCATTGTT 1252324 25 100.0 40 ......................... TACGACGACGTCTGGTCGCGGGCGACCATAAAGGTCGCGA 1252389 25 100.0 41 ......................... CACGCGGGGCACACGTGCTTACAGGGTGGACAAGGCGGCGG 1252455 25 100.0 49 ......................... TCAGGGCAGGCTTGTTCACGCGCAGATGATCAGCAACGTTACTCGCACC 1252529 25 100.0 40 ......................... CGTGCTTCTTCGGGCTGTCTAGCTCGGCCACCGTGGCCCT 1252594 25 100.0 46 ......................... AAACGCGCATTCCAGCACCACACCCTCATCGTTTACACTCACACGG 1252665 25 100.0 52 ......................... CATGCAATTGCCGCGACACCATATTCTCGGGTTAGCGCGCGTACATGAGAGA 1252742 25 92.0 42 A...T.................... ACCAAGCACAACTCACGACAACGGAGACGCAAACAACGGTGA 1252809 25 96.0 43 .............G........... TCGTAGAACGCCTCGCCGTGCAGCACGCGGAACCTAGCCATGT 1252877 25 92.0 43 ................T.......A GCTCTCCCCGCTGAACGTGATCGCCATTATTGTTTGTGCCCCT 1252945 25 96.0 0 ......................G.. | G [1252967] ========== ====== ====== ====== ========================= ==================================================== ================== 11 25 97.8 44 GAAGCAACTGTGAAAGCATTGAAAG # Left flank : CCCAGCACAGCCACGCCGGCCACTCCGCCGCCGAGAGCCCCCCCGTATAGCCGCGTTTATGTTCTCCACGGCGCCATCAATGCCGACAACGTGGTAGTTAGAGGGGCCAGCCTCCCCAACGCCGAGAACACAGCCCTCCGCGTCACCCGCCACGGCAAGCGTCTTCGTCGCTCCCCCATCAACGCCTACGAAGGCCTCCACGGGGTTAAACGGAGCACCAGAGTATAATAGCTTTTCGCGCAACAGCCCAAAGCCGCGCATAACGGGCATACCCACAAATTCCCGGCAAAAACCGGGAACTCGATTTTCTGTTTACGAATCCCTCTCGACGGGAAGAGTCTCTTTTGAAAATACTTCTCGTAAAATCCCGGTTTCTGTTGGGAATTTCCCGTAACAGTTTTCGAAGCCTCCCATGGGTAAACTTCGTCAAAGAGGCAGTTTTGCAGGCTTCGAAACAAAGAGAAAAGAATTTATAACACCTTTGCCGTAGAAAGTGGTCG # Right flank : GGTGGGAGTTGTGGGGAAGGTCGAGGAGTTGCTCGCCGAGTGGCCGGAGGTGGCCGGGGTGTGCGCGAGGCTCGCGGCCGGCGAGAGGCTCGGGGAGGGCGAGGCCGTGGTCAAGGAGGTCGCGGAGGCGGCGGGGTGGGGCGTCGACGACGTAGTGGAGGACCTCGCCCGGATCGGGGTCGACCCCTCCGGGAGGGTGGAGAGGTACAGGGAGCTCTTCGAGAAGTACTACGCCGAGGCACTCGAGCTCAAGAGGAGGGGCGACGCGAGGCAGGCAGGGGAGAAGCTCTGGGGAGCGGTGACGGCGCTCATCAAGCTCTACGCGGCGGAGAAGGGGGTCTTCGTGGCCCACTGGAGTACGGGCAAGCTGGACAGGTTCGTGACGAGCAACGTCGGCAAGGAGCACAGGAAGCTTTTCAGGGACCTAATCGACAAGGCACACAGGCTCCACGAGAACTTCTACGAGGGAAGCCTCGACCCCGAAACCCTCGAGGAGCGCT # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCAACTGTGAAAGCATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 5 1254902-1253733 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 1254901 24 100.0 34 ........................ GTGAAAAGCCCATGCAGGGGGAACCACTCCCCTA 1254843 24 100.0 37 ........................ TTGATAGCCATCCCCAGACCCGTGAGATCGAGACGCG 1254782 24 100.0 46 ........................ ATTGCCGACCATGTAACAGGCAACGGGATTTCGTTGAAACCATCGT 1254712 24 100.0 36 ........................ AAAACATAGTAGGCGTCGGCGCTTTCGTCGCGGTAA 1254652 24 100.0 32 ........................ GGCGAAGCTGGGGCTGTTCGGCGGGCAAGCCA 1254596 24 100.0 32 ........................ CTTCTTGAACGGCAAGCTCACGCCGATTGAGT 1254540 24 100.0 33 ........................ TCGCTCCACAGCCCCAGCTTCCCATAGGTGTAG 1254483 24 100.0 38 ........................ GAGGAGTATCCTCTCGAAGTAGAATGGACACGCGTGCG 1254421 24 100.0 36 ........................ TCCCTAGAGTAAAGAGATTAGATTAATCTCTTTTCA 1254361 24 100.0 36 ........................ GTATCAACCCTCTAGCGGAGTTACGGAACTTATAGG 1254301 24 100.0 36 ........................ ACAACCTGGTGGCGTGGTCTCCCTCGCTGGGAAGCA 1254241 24 100.0 33 ........................ GCGTGTCGCCGGGAGTGAATGCATAAAGGCCGG 1254184 24 100.0 33 ........................ TCGACGTGACAAGGCTGGACAAGGAAACGGCTA 1254127 24 100.0 38 ........................ ATTCACTCGTTTCACCTCGCGGGGTTTTCCCCGCCCAT 1254065 24 100.0 37 ........................ TCGACGAGCACCGCTCCGTACACGTGGACGAGGTGTA 1254004 24 100.0 37 ........................ TAACGGGGCTCACGAGGCTTACCGCGCCTTCAACCTT 1253943 24 100.0 31 ........................ TGCTGGCGCACGCGCACGAGATACCGGAGCG 1253888 24 100.0 47 ........................ TTGCAAGCTGTTTCGGTGTAGCAGCGTAGGCCACACGCGTTGCTACA 1253817 24 91.7 37 .....................AG. GTCTATTAGGTGCCTGTTTGTGACAAGCCAAGTTCTC 1253756 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 20 24 99.6 36 GTTCAAAATCAGCAAGACTAAGAG # Left flank : AGGCTCACGGGCGCAAGCCTACCGAAGCCGGAGGAGCTGGCATCCACCGTCTACGTGGCAGGCCTAGACGTCAAGACGCCGCCAATGGAGCCCTCGAAGCCGGCGCCAAACGGCTTCGTAGGATGGGTGAAGCTGAAAGCCAGGAAGAACGCCCCCAGCGACAAGCTAAGCCTGGTGCACGGCCTCCTAAAACTGGGAGAACTCACGAACATCGGCGGAAACAGGAGCGCAGGCTACGGAGTAATAACCGTGAAAACAGCCAATCAACCCTCAAAAACAACACCCGAGAAAGCTTAAAAACCCTTGACACTGTCAACGATAAAAGCTTTACTGGGATTTCTCCCTTGCCAGGCTTTCTCGTCGAGTTGGCATGACGGCGTCATTTATAAATGCTTTTCGGGGATTTCTTCCCAACGGGAAGAGGGGAGGAGTTAACGTTTTATACCGCCACAGAGAAATGTTAAGCGGGGTTTCGAGAAGAAGCTCCCACAAACCCCTCA # Right flank : TTGGTAGCTGAAGGTAGCGTACGAGGGGCGTGGCCCCAGAACCTGAGTGTTCCAGGGCTTTGGGCCGAGCGCGGTCGGCGAGTTTTCCTGCTTGTGAGCGCGCGGTAACGGTTCGGGCCGGGGTTGACTGCCGGGGAGTGTTCCCGGGGTGCCGGGTCGTTCTCGGGCTGGTGCTTAGGGCGGGGCTTGTCGTGTCTTCTCGCTTCGCCGCTCGTCGAGCACGATTCTCTTGGCTTTTTCGAGTAGGTCGAGGGCTTCGGCCCAGCGCTCCTCGAGGGTTTCGGGGTCGAGGCTTCCCTCGTAGAAGTTCTCGTGGAGCCTGTGTGCCTTGTCGATTAGGTCCCTGAAAAGCTTCCTGTGCTCCTTGCCGACGTTGCTCGTCACGAACCTGTCCAGCTTGCCCGTACTCCAGTGGGCCACGAAGACCCCCTTCTCCGCCGCGTAGAGCTTGATGAGCGCCGTCACCGCTCCCCAGAGCTTCTCCCCTGCCTGCCTCGCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAATCAGCAAGACTAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 6 1258381-1256017 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================================================================== ================== 1258380 25 100.0 41 ......................... CTCACGTTTGTCGTCATCCTTATCTTTCTGAAGCTCGCCCC 1258314 25 100.0 39 ......................... GCGAAGACAAGGGAGTTCCGTAGATCTCGATGAAAAACT 1258250 25 100.0 40 ......................... TTCAGCGAGGTGGAGGACTTCGGGCCGCCCGCCATGCTTA 1258185 25 100.0 40 ......................... GAGCTAAACCTGGAGAAGCTGATGGAGCTGAACGCCGGAG 1258120 25 100.0 39 ......................... TCAGGCCGCCCGGCGACGCCAGGCACAACAGCTACGTGT 1258056 25 100.0 39 ......................... CGCAACAACACCAGAAGGGGGGATTTCGATCTCCGGCTT 1257992 25 100.0 40 ......................... AGTCCGTAGTTCACCACGGCGCTGAGCGCGTTGTCTATTA 1257927 25 100.0 55 ......................... GGTGGGGGTTGTTCCTCCTCCTACGCTCCTCCTCAAGCAACCTTTTGAGTAGCAG 1257847 25 100.0 38 ......................... CTTGAAGCGTTTAACGTTTTCGTCGAATACCTCGTCGA 1257784 25 100.0 38 ......................... TCAAGTTGCTGTATGGGATCAACTGGGAAGACCCGTTC 1257721 25 100.0 37 ......................... TGAAGTACTCGTAGCTCTTGCCGTACTCCTCCTCCGC 1257659 25 100.0 38 ......................... ATGTTTGGGCTGATGTAATGTATGTTCGTGACCAGCCA 1257596 25 100.0 42 ......................... TGGTTATACCCTGCGAGGGCGTAGCACAGCCGAAGAGGGTAA 1257529 25 100.0 39 ......................... AGCATTATCTCAAAAAGTAGGGCTTGAACTGTTAAGCGG 1257465 25 100.0 40 ......................... GGTACTAGGCGCGCGAGCGACCGCTCCAGTTTTTCGAGTT 1257400 25 100.0 39 ......................... CTACCGGCGAGCTGCTTGCTAGGGGGGCGTCCTGGGGAG 1257336 25 100.0 37 ......................... CTATCTCGCGCGACAGCTCCACGAGGCGCATCGCCGG 1257274 25 100.0 38 ......................... AGGAGGTGAGGATAGGCACCGCGGACGGCTCGGCGTTC 1257211 25 100.0 39 ......................... TCAAGGCGCACGACTTCCTAGAAGCCGTGGAGGAGAAGA 1257147 25 100.0 39 ......................... CCATAGCCCTCGCCGCCTCCCTCTTCACGTTCGACTTGG 1257083 25 100.0 41 ......................... TTATTTCAACAGGTGCACGTTTCTGGACAGCGTCCCACACT 1257017 25 100.0 38 ......................... TCCAGCTTTTCCTGCGCCAGCTTGTTCAGTAGCTCGTT 1256954 25 100.0 40 ......................... GGGGGTAAGGGCTCGCTGAAGGACACGTTCTTGATACCGT 1256889 25 100.0 34 ......................... CCTTCTTGATGTGGGCGAAGCGGGGCATCGCCCC 1256830 25 100.0 39 ......................... CGGGAGAGGCGAGGAAGATCGAGGTGCTCGAAGTCTTCG 1256766 25 100.0 44 ......................... GGGATTGCTACTGCTACCACCACCTCTACCACCCCATCTCCACC 1256697 25 100.0 40 ......................... TTGTACGCCTTCACCGTGTTCTCGGCCCTCTCCCACGCAT 1256632 25 100.0 44 ......................... CTACCCTGATCCTCCGAAGGCTCACCCCCCGCCCCCCAACGTCA 1256563 25 100.0 36 ......................... TCTATCACCACCGCCACCGAAACTCGCGCCAGGCGT 1256502 25 100.0 46 ......................... ACATAGTGGAAACAATACTTGCCTGCTCAGCTCTGCGCAACCCCCA 1256431 25 100.0 40 ......................... CCGAGCCAGGGGTAGGTGTACCTCTTCTTCACGTCGAGGC 1256366 25 100.0 42 ......................... TACTACATTAGCGACGGTCGCTGGCTCATGGTGGATCTCGAA 1256299 25 92.0 40 .......AG................ AGCCAGTATACGGCGAAGGGCTTCCCAGCCTCGTCTCTCA 1256234 25 84.0 41 ........G...G....AC...... TGAAAGAGGTAGCGTCCGTGTGGCGGTGTTACGTCCGTAGA 1256168 25 84.0 102 .......A.........ACC..... GTTCGGTGGATGGTAATCCTCTGCTTCTCCTCCTTCCTCGCGTATCAACGCTGCGAGGCTAGAGCTGAATAGCTTGGGGAGCCATGGTTCCGTGTCTACCTG 1256041 25 72.0 0 .......GG...G...G..C.GG.. | ========== ====== ====== ====== ========================= ====================================================================================================== ================== 36 25 98.1 42 GTATCAACAACGAATGAGTTGAAAG # Left flank : GACCAAATTACCCAAAACCCTATCAACCTCCTCGCCCACACCGCCAACACCGTCGCACAAGCTAATAAGCCTTACAGGCAGACCACGCACCACCTCGAGCATGGAAGACCAGCATCGAAAAACCTCCACGCGCACACCGGGCCGGCATACGAGCTGGGATGAGTAGCCGCTAAGACACAGGAGAACTACACCCAAACAAAAAAGGCAACAGAAGCAAACAGAGATTAATCCTTCGTGATACGGGGTGGGAGCAGAGGCTTCCCTTGTCGAAGCCTGCCCGTCGGTTTTTCCTCCTCTAAGCATATAGGCTTACGGGAGGAAACTCATTTTCAAAATGAAGCTTCCCACGCGTTTTCTCCCTATCCGTATCACTCAGCATGGTAGGCGTAGGTCTTGAAAGATTTTCAAATGCTTCCCGTAAACGCTTGCCAAGGATACGCACATACCCGGAGAAAAAGATAAATACATCCAAGCCCCATTACAAACGTCCACGAGAAACG # Right flank : AGCAGTGCCCCGCCTCGGCTCGGGCTGTTGAGGTTCGGGCGTTAAGGTATTAAGGGGGGTTGGTGTTTTCTGTGTGTGGGCTCTGTCGTCGTCGTAGAGCTTTCGCTTAGGGCTGTGTCGGGCGGGTCTCTCCCGTGGTTCTCGGGGGCCGAGTGTAGGGGTGCGTTGCTGAGCGCTGTGGGGGCTGTGGATGGGGGTGTCGCGGGGCTCATGCACGGTAAGCCTGGCTCTCCGTCTGTGTTCGCGCTTAGGCCTCTGCGCTTCGCCTCTGGGTTCAGGGTTGTGGGTGAGGGGGTGTCGGCGGGCGTTCTCTTCGAGAGGGGGGCTCTCGCAAGGATGGAGGTCGCCTTCCTGGACGAGGGGGTTGCGAGGAGGGCTGTCGCCGCCATCGCCTCTACGAGGTCCTTCTCGGTGAAGGGGCAGGAGTTCGCGCTCGAAGGCTTGGCGCTCAGGGTCTACGACCCGGCGAGGGTCCTGGAGGCGGGGCCCTTCGAGGCTCT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAACAACGAATGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 7 1260644-1260196 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 1260643 25 100.0 32 ......................... GGATGTCCGCGCAAAATGGGGCAAGCCTTAGG 1260586 25 100.0 35 ......................... GCGCGAGCATGAGCGCGCCGAATCCGTACGGGACA 1260526 25 100.0 32 ......................... ACAAGCTCGCCGCGCAGAGGGACGACCCCGTA 1260469 25 96.0 36 T........................ TTGACGTGGATCGGGACGTGAATTCTTTTATCATAC 1260408 25 100.0 40 ......................... TGTAGCAGTGCGGCTAGCCTGACCTCGTAGACCGGCGGCG 1260343 25 96.0 38 T........................ CCATGACGACCTTCGTTTGCGCATGCCTTGCGAGCGCT 1260280 25 100.0 35 ......................... AGTATCCCTGACCCGTCGATAGACTGGGATTCGCC 1260220 25 88.0 0 C..........G............C | ========== ====== ====== ====== ========================= ======================================== ================== 8 25 97.5 36 AGTTCAAAATCAGCAAGACTAAGAG # Left flank : CAAACCCCTCTTCGACTCCAAAACAACACTCGTAACCCCGGGCTACAGCCTCAAAGACGGGAGGCACAGAGACCCCCTACCAGGCATAGCCGGAAACACGCTCGCAATCGCAAAGGCAAACCCGAGGAAAACATACGAGGAAGGAGCAGGGCTACACAGCGACACAGGATGGGGCACACTCATACCCATCCAGCTCCCAGAAAAACTCTGCGAAAAAGCCGCGAAACTCAGAGAAAAACACCAGCAAAAAAGCAAGAACCCATTCAACCCTTAAAGCCCCGCGCCCGGGAAGGCTTATAAACCCTTGACACTGTCAACAATAAAAGCATTTCGGGGATTTCTCCCTTGCCAGGCTTTCCCGTCGGATTGGCATGACGGCGTCATTTATAAAAGTGTTTCGGGGATTTGTTCTCGTTGGGAAGAAGGGAACAGAAAACGTTTTATACCACCACAGAGAAATAAAACCCGGATTTGCGGGAAAAGGCTCCCACAAACCCCTC # Right flank : GTGGGGCTTTCTCGCCGGTTGTTGCGTTAGCGGCCCATCGCCGTCGTGAAGTCTAGGGGTAGGGCTCTAAACGGGGCTGACGTTACCACTACGTCGACCCCTGCCCGCGCGTAGTCGGCCACGTTCTCGGCCGTTACCCCGCCGGACGCGCCCACCCTTGCCTCCGGGAACCCGGCCTTGACTACCCGCACCCAGCCGTTGAGCGTCGCCGGGCCTACCCCGTCGAACCGGGCGTAGCGGGCCCCCGCCTCGAGGGCCTCCAGCGCCTCCTCCAGTGTGACCACCTCGACCCCCACGGCCCTGTAGCCGACCCTGGCGACCAGCCTCTCCACGGCTCCCTCCACCCCCGCGCCCAGCAGGGACAAGTGGCTCCTGAAGACGAGTACCTCCTCGGAGCATGCCGGTACGCCGCGGGACCTCGCCGCGACCAGCGAGACGCCCGGTGGTGGGGTCTAAGCGGGGGAAGCCCTCCCGCGAGGGGCTCGGGGCTGTGAGCGTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCAAAATCAGCAAGACTAAGAG # Alternate repeat : TGTTCAAAATCAGCAAGACTAAGAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 8 1269389-1270964 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 1269389 24 100.0 36 ........................ AGCAAATACTCCCAGATATCCATGTCATCTTTCCTG 1269449 24 100.0 36 ........................ TCAAGAAGCTCGCTTACACGCTCATTAACAACGTCT 1269509 24 100.0 36 ........................ TGGACGTTTACGGGCCGGAGGTTGACCCTGAGGCAA 1269569 24 100.0 31 ........................ TGGAGAAGAGTTGCTTTGCAATAGTGAACAC 1269624 24 100.0 34 ........................ CACCGGGTTTTAGCACAAAGCTTGGCATAAAAGC 1269682 24 100.0 41 ........................ CCTGACAGCCGGCGTTAGAAGCAAAACCCCGACCGCGTACC 1269747 24 100.0 32 ........................ CCAACGTAGTTTTACCCACACCTGTATCGGCG 1269803 24 100.0 31 ........................ TAGAAAAGGTGCCGGTCGATAAGGGCAAATA 1269858 24 100.0 35 ........................ AGAAAGATAACGTTAAGACGTAATATAAACGTTAG 1269917 24 100.0 37 ........................ ATGGACTCGTACTCTACCCTGCTAACAGGGTACTTCC 1269978 24 100.0 35 ........................ AAAAGAAAACAACAACAAAAAAAGAAAAGGTTTAC 1270037 24 100.0 34 ........................ TTACTTCGTCTAAATCTCTCTCTCGCGCGCGCGA 1270095 24 100.0 32 ........................ GCGCATGTGGCCGCCGAGCTGTTGCGCCGTTT 1270151 24 100.0 37 ........................ GGGGTCACCCGGGAGAAGGTCTAGCTCAGAGAGTATT 1270212 24 100.0 38 ........................ AGGTCGAAATGGTTATCATTGAGCAGCATCCGCAATAG 1270274 24 100.0 39 ........................ GAATGAACGTCGTCTTTCCGCAGCCTGTTGATCCTATGA 1270337 24 100.0 36 ........................ AGGCGCAGTACAATTCGTGGCTAGAATCGCGGCTAG 1270397 24 100.0 33 ........................ TGCACAATGGGTACGCAAACCTCCTAGAAATTT 1270454 24 100.0 37 ........................ TAGCGCTCCTCGCGGCTAGCTGTTTCCTCACGTTCAC 1270515 24 100.0 32 ........................ TGCTTATCGTTTCAAGAGCGCCGCACTTAGTA 1270571 24 100.0 37 ........................ AACCATGCGAGGTCTAACCCGTAGTTGACTACTGCGC 1270632 24 100.0 36 ........................ CTACTAGGGGAGAGCGCGAGAGAGGTAAGAGAGCCT 1270692 24 100.0 34 ........................ AACCTGAGGGGCCATGCGATGCTTGAGACGCCGT 1270750 24 100.0 37 ........................ GAGGCGGCGTTGAAGAGGTCGCCGAGGTCTAGCGCTA 1270811 24 100.0 41 ........................ GTGAGCTCGGCGCGTTTCCCCTCCTTCCTCGGCTCTCCCTC 1270876 24 100.0 41 ........................ CGCAGACGCTGAGGGACTGGCTCCAGAACGGGTTACCTTCG 1270941 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 27 24 100.0 36 GTTCAAAATCAGCAAGACTAAGAG # Left flank : AACGCGCCCTTAACACTGGAGCCCCACACCTCCGGGTAGCCGAGCGAGTCCCTCTGAACAGGCAAGTCCACGAAGCCGTAGCCACGCCCACTACCGGCGTGCACGGGAGTATACGCGGAGGCGAGCAAAAGGTAGCCGTACTCGTAGTCAGATACAACGAACACCCCCATACAGCTAAAAAACCGAAAAACCACTATAAATCCTTGTTGAAAAGGAGCACAGACACCAGAACCCACGCGAAAACTAGCCGCAAACCCGCATTTCAACCCTTAAAGCCTCTGCTTGGGAAGGCTTATAAAGCGTTGACGGTGTCAATTTTAAGAGTTTTTCGGGGATTTCTCCCTTGCCAGGCCTTCCCGTCGGATTGGCATGACGGCGTCATTTATTAAAGCTTTTCGGGGATTTGTTCTCGACGGGAAGAAGGGAACAGAAAACGTTTTATACCGCCACAGAGAAATGTTAAGCAGGGCTTCGGGAAAAGGCTCCCACAAACCCCCTCA # Right flank : GGCTTAATTTTTGACAAGACCTTTCTTGCCGCAGGAGCTCTTCGGCTCTTCCTGCGCATTCAAGGAGGAGGCGCGTGCCTTGTTCGAGGTGGCTACCCGTAGGTGTCTGCGCGTAGGCTGGAGAAACGGGCGCCGAGAGGTTCGGGAACCGCTCCTCGCATCGTCAGTCTAGGATAAGGTTGAGGCAGTTTTAGCGGAAAGATTGGGCTCTAAAAATTGATTGAATTGATCGTTTTTCTAAACTTTTCACGATTTTTCGAACAAGAATATTAGAGAATGCAACCTCTTCTGTTACCCTCTTACACTTGCTGATTTTGAACAGAGCATGGAGAAAGCCGAGAAAAGTAAAGAAACCTCTCTTAGTCTTGCTGATTTTGAACACGCTTCCCAATACGCGCGCGGCACGCTCAGCGCTCTTAGTCTTGCTGATTTTGAACGAGCTCAATACCTCACTCTGTACGTCCACTGCTCGCCTCTTAGTCTTGCTGATTTTGAACACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAATCAGCAAGACTAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 9 1273334-1271260 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================================= ================== 1273333 24 100.0 36 ........................ CCTCCTTTGCCCACGGCATCGGTAGGTCAGGTCCAC 1273273 24 100.0 33 ........................ TAAAGAATTCTTCAACGCTGATTCCCCCGGCCA 1273216 24 100.0 34 ........................ CGCTTGCGTAAAGCGTCTGTCCCGTCGCCGCCAC 1273158 24 100.0 39 ........................ AAGGGACATTATCGTTGCATCAGGCTCTGGTACACCGGC 1273095 24 100.0 37 ........................ TGTGCAGGTCTATCAATCTCGTGCTCATTTTGGGTCG 1273034 24 100.0 35 ........................ TAGTCGTCGATTATTTGCCGTGCACGTTTCAGCGT 1272975 24 100.0 34 ........................ TGATAGTTTACACACCACATGTATAAATCTTTTA 1272917 24 100.0 35 ........................ ATGTTAACCACTTCCTCAGACCTCTTAACCATAAC 1272858 24 100.0 37 ........................ GAGCCTGGGGAGCCGCGAGGAGAAGTAGTCGCCGCGG 1272797 24 100.0 42 ........................ GATAAGGGAGATGGCGCTCAAAGAGTGCGCAAGTAAGAGCGA 1272731 24 100.0 35 ........................ TAAGCAACGCGCACGTGCTACACCCGTACCCGCTA 1272672 24 100.0 31 ........................ ACGAGATTCTGGTTCAGATAGCGAGTTATCT 1272617 24 100.0 40 ........................ CTGTTGCGCGAAACAACGTCCGCTAGGAGCAACCACGCGT 1272553 24 100.0 34 ........................ TAAAGCCGCCTAGCCAAAAACCGTGCCAGAGCCT 1272495 24 100.0 35 ........................ GAGGGTCTGCGACAGCGCCTTCACGATTACGGCGC 1272436 24 100.0 35 ........................ TCCATGCCGTCGAGGTGCCCGAGGAGGAGGTCGAA 1272377 24 100.0 38 ........................ TGATTTTGAAACGCTGAATTCTGCTTTCATTTTTCTCA 1272315 24 100.0 34 ........................ GGAGGCTCAGGAAGCTCGGCTTCAGGGTCTACGT 1272257 24 100.0 36 ........................ CCGCCCCGGAGGGGGCCATCGTGTACGTCGGCTACA 1272197 24 100.0 35 ........................ TACTCTTATTCTGGGGCCAGACCTCTCGTTCATCT 1272138 24 100.0 37 ........................ GTGTGAGTGCGTGAACGCGCGCGAGCAATCCGTCAAT 1272077 24 100.0 32 ........................ CTTGGCTAGCACACGACGCTGGGCAGGGTCAA 1272021 24 100.0 39 ........................ ATTTTATGCGCGTAACCACACGGCGCGCTGAAGGATCGA 1271958 24 100.0 33 ........................ GGGACGTCTACGCGTCATGGAACTGGAGGCCGC 1271901 24 100.0 40 ........................ CGCGAGCCATGTTTCGCGTGCGGGTAGTCCCGTTTCTTCA 1271837 24 100.0 38 ........................ ACCTCAAGCTTTAAGAAAAAGCCCAACCCCTTCGCCTC 1271775 24 100.0 34 ........................ AGCAAACGTTTTGGCACTATTTCGTGCAGAAGCC 1271717 24 100.0 34 ........................ GCCTCCTCCACAGCATCACCGCGCCTATGTGCGT 1271659 24 100.0 37 ........................ AAGCTCGCCCCGCCCCCCAACGTGGACAGGAGGACCA 1271598 24 100.0 55 ........................ AAGTTGTCCGTGTTGTCCGGCTCAAAAGAATTAGTAATAAACCATACATGCACAC 1271519 24 100.0 35 ........................ GAAGCCGGACGGGACCAAAACGGCGTCGAGCTTGT 1271460 24 100.0 36 ........................ GCGAGCAGTGGACGTACAGAGTGAGGTATTGAGCTC 1271400 24 100.0 33 ........................ CGCTGAGCGTGCCGCGCGCGTATTGGGAAGCGT 1271343 24 100.0 36 ........................ AGGTTTCTTTACTTTTCTCGGCTTTCTCCATGCTCT 1271283 24 91.7 0 ................TG...... | ========== ====== ====== ====== ======================== ======================================================= ================== 35 24 99.8 36 GTTCAAAATCAGCAAGACTAAGAG # Left flank : AGACGGCGACCTCGACAAAGACTCCCTCAACAAGGCCATGAAGAGGCTCTACAGGTACCTCTCAGCCAAGCACAGGGAAACCGGGAAAACACCCTACCAGCAGATACACCTGAAGGCATTCTGCCTCGCAAAACACCTGGAAGGCAAGTGTAGCAGAGAAAAACTCGCCTTCACGTGGGACAAAAAGCGCTACATAATACACGAGTAAAGCAACCCCAGCCCCCAGACCCCAAAGCAGAAACACCCAGCCGCAAACCCGCATTTCAACCCTTAAAGCCTCTGCCTGGGAAGGCTTATAAAGCGTTGACGGTGTCAATTTTAAGAGTTTTTCGGGGATTTCTCCCTTGCCAGGCTTTCCCGTCGAATTGGCATGACGGCGTCATTTATAAAAGTTTTTCGGGGATTTCTTCCCAACGGGAAGAGGGGAGGAGTTAATCTTTTATACCTCCACAGAGAAATAAAACCCGGATTTGCGGGAAGAAGCTCCCGCAAACCCCTCA # Right flank : GGTAACAGAAGAGGTTGCATTCTCTAATATTCTTGTTCGAAAAATCGTGAAAAGTTTAGAAAAACGATCAATTCAATCAATTTTTAGAGCCCAATCTTTCCGCTAAAACTGCCTCAACCTTATCCTAGACTGACGATGCGAGGAGCGGTTCCCGAACCTCTCGGCGCCCGTTTCTCCAGCCTACGCGCAGACACCTACGGGTAGCCACCTCGAACAAGGCACGCGCCTCCTCCTTGAATGCGCAGGAAGAGCCGAAGAGCTCCTGCGGCAAGAAAGGTCTTGTCAAAAATTAAGCCTCTTAGTCTTGCTGATTTTGAACCGAAGGTAACCCGTTCTGGAGCCAGTCCCTCAGCGTCTGCGCTCTTAGTCTTGCTGATTTTGAACGAGGGAGAGCCGAGGAAGGAGGGGAAACGCGCCGAGCTCACCTCTTAGTCTTGCTGATTTTGAACTAGCGCTAGACCTCGGCGACCTCTTCAACGCCGCCTCCTCTTAGTCTTGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAATCAGCAAGACTAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 10 1281906-1282413 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1281906 24 100.0 38 ........................ AAGAAGCAGGGATCCCCGCACGCGAGGCATGGCTTACG 1281968 24 100.0 33 ........................ TGACTTAGACATCAATTTCACTGAGAGGTGTCT 1282025 24 100.0 34 ........................ GAATTGGACACGAGCTTCTTCTCTGGTTGCCGGC 1282083 24 100.0 36 ........................ TGTGGGCCCTCCTGCCGACCCGGAACACTACCTCTA 1282143 24 100.0 39 ........................ AAGGAAAGAAGAAGCTCTGGAGCAGGTATTCGACGGGCT 1282206 24 100.0 37 ........................ GAAGCACCGAAAGATCTGCTGTGGATTCTCAAGTTAG 1282267 24 100.0 42 ........................ CGGCGTTGAGAAGATTGCGAGCCTAATGAGCAGACGTCACGT 1282333 24 100.0 33 ........................ CGTCATAGCGGTAAAGCTGGCGAGGAGGGTCGG 1282390 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 9 24 100.0 37 CTCTTAGTCTTGCTGATTTTGAAC # Left flank : GCACCGTCTACGCCCAGCAACTCCAGCCTATCCTTAACCCACTCCTCAACCCTCTTCAAAGAGGCCTTCCCGAGTACGCCCAGCTTCTGCCCGAGGTCGTGTATAAACCCCAGTATGAACGCCTCATCCTCGCCGGGGGCATCCCCCGCGCACTCCCCCACCCCTGCGACGAGCTCCTGGAACAGCGCCCCCACGCTGTAACCGTGAACCAAGAGGCTGATACTAGTCCAGTACTTCGCCGGCAAAGCCGAGAGAGGCGGAGGCAACAACGAGTAGGCAATCGTCGCGCGAGAGCCCGCGTCCATGAAGCCCCCTCCACTTTGCATCTTCTCTTACCCTAAAGTCTACATAAACTTTTCTAACAGAATACACTGAAACTAAACCAAATTGCTCACGATTCAAAGGCTCCTTCAAAAACCGCGAGCTATAGACGTTCACAGAGCAACACTTTCAGTCTTGTCAATTAAAACTCTTCGACCCAACACTTCGCAGAGTCCTCT # Right flank : CTGAGGGGGTTTGTGGGGGCTTCTTCCCGAAGCCCTGCTTAACATTTCTCTGTGGCGGTATAAAACGTTTTCTGTTCCCTTCTTCCCGTTGAGAACAAATCCCCGAAAAACATTTATAAATGACGCCGTCATATCAATCCAACGGGAAGGACTGGCAAAGGAAAAATCCCCGAAACACCTTTAACCTTGACACCGTCAACGCTTTATAAGCCTTCCCAAGCAGAGGCTTTAAGGGTTGAAATGCGGGTTTGCGGCTAGTTTTCGCGTGCTGTTTTGTGTACGCAAAACCTCGCCGGGCGGCGTGCTTGGATGAGGGTGTTGGGACTGTTTTTCCGGCGGTGCTGGCGGGGTTTGTTCGCGGGTGGGCTTCGGGGGCTTTTTGTCCGCGTGGGTTGTGCCGCTACTCTTCGGGTTTGAGTGTCGAGAAGTCTATGTTTTCAAGCCCTTCTACCGGGGTTCGAGAGGCTACGACGAGCACGTAGTTGTCTCGCTTGAAGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTAGTCTTGCTGATTTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 11 1315223-1315592 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 1315223 25 100.0 46 ......................... AGAAGCTTAGGTTCTACATTCTCGTCGCGCGCGTGAGAGATGGAAA 1315294 25 100.0 38 ......................... GACGCCGAGGCGAGCCGCCTCAGGGCGTCGTTCGTGCC 1315357 25 100.0 47 ......................... GACAGGGAGTTGCCGCTCACGCGCAACCCGCGCTCCGCGAGCGCCGC 1315429 25 100.0 39 ......................... GGGGCGTCACGGCTTACACCCCGCGTATCCTTTCGAGGA 1315493 25 100.0 50 ......................... TTTCGTAGTCCGCACAGTGGCCATGTGAATTCTCTTGATAATTCCATGCA 1315568 25 96.0 0 ........................A | ========== ====== ====== ====== ========================= ================================================== ================== 6 25 99.3 44 GAAGCAACTGTGAAAGCATTGAAAG # Left flank : CCCTCGCCCTCAGGACCTCCCCCTCCCTCGCGAGCAGCGGCGCCTCCTCCCCGGCGAGCTTGTACAGCGGCCTATCCCCCCTGAAGAGCACGGAGAAGGAGGCCCTCCTACCCATGGTCTCCGGATCTAGCCCCCAGAGAGCCGCGAAGGCTGTCCTCGTCACCTTGCTCGTAAACGGGGGTAGCAGGGCGTCCCTCAAAGGCACGATCTCCAAGCGGGCGGTAAAGACGTACACGTAGGAGAAAGTGGCGAGCCCCTATAAGAGCATACCGCCGTAAATTCCCGGCAGAGGTCGGGATTTCGATTTTCTGTTTACGAATCCCACTCGACGGGAAGAATCCCTGTTGAAAATACTTCCCACAAATTCCCGATCTCTGTGGGGAATTTCCCGTGCCTGTTTTCGAAGCCTCCCATGGGTAAACTTTGTCAAAGAGGCAGTTTTGCAGGCTTCGACTCACTGAGAAAAGAATTTATAGACCCTCTGCCGTGAAAAGTGGTCG # Right flank : AATGAAAATGAATCTGCCCTAGTCTATCCCCAAAAATACTACCAGCTGGCTTAAGCGAAGTGGCTGTAGAGAAAAATCATAAGGATATTCGTTTCTGCTAGGGATTCTTAGACCTTGGGTTGCGGGCTAGCCTCTCTAGGCTTTCTCGCGGCGAGGGCTAGGAAGTCGAAGAGCGGCTTGAGGGCTGCCAGCTTTCTCACGACTTCGTTGCTCGGGTCCTTGGGCCCGGGGAGCCTTACTCCGTGCTCGCCGAGGAGCTCGGAGAGCTTCTCGAAGTCCTTTCCGCGCCTAGCCTCGAGGTAGCGGTAGTGTACGACAACCCTCGCGACTCTGAGCGGGCTTTTGCCTAGAGCCTCCTCCGCCTCTTCGGCTTCGTGGGCCAGCTCGGCGAGGGCGTAGACTAGGGGCTTGAGGCTCTCGAACTCCCCGGCTTCCTCTCCGAGGGCCGCTCCGACTACCGCGGCTAGCCTCGCGAGGTCCAGCTCGCCGCCCGACATTGG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCAACTGTGAAAGCATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 12 1324530-1324028 **** Predicted by CRISPRDetect 2.4 *** >NC_008698.1 Thermofilum pendens Hrk 5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================== ================== 1324529 25 100.0 42 ......................... CCGCACGAAGGACTCCAGCTTCCTGCCGCGCTCCAAGAAGTT 1324462 25 100.0 43 ......................... ATCAGTATCGTGGGCTCACCGCTCACCAAGCCAGCTAGGATCG 1324394 25 100.0 38 ......................... ATCCGATTCAACGGGAAAACAATTGAAAGAGAACTTGG 1324331 25 100.0 46 ......................... GTAGTATTCCTCGCCGTGGGTCCCGCTCTTAGACAACCTTACCCTC 1324260 25 100.0 40 ......................... GTCTGCCACGTAGAACACCAGCTGTGTCACGGCGTAGGCC 1324195 25 100.0 39 ......................... GTTCAAGTTGCTGAGGCCGGGCTTCGGCGCCGAGGTCAC 1324131 25 96.0 54 ....................A.... CCGAACGTAAACAAAAAGCTCATACGTCCGCACCTCTTCCAACGTGATTTTTTA 1324052 25 96.0 0 ....................A.... | ========== ====== ====== ====== ========================= ====================================================== ================== 8 25 99.0 43 GAAGCAACTGTGAAAGCATTGAAAG # Left flank : CACGCGGACGAAGAGCTCGTCGTCCGGGACCTCCGCCGGAGGGTCGACCGGCAGGAAGAACACCACGGTCAAACCCCTCCTCCTAGCGGCTTCAGCCACGTCCCTCATAACACCCCAGTAACCCCCAAGCAACACCCTAACACCGCCCGGCAAAGCCGAGACAAACCTCCAAGCCCTCTCAGCGTCAGAGCCAGAGCTGTGAGCCGCCACACCTATATGCAACACTGAGACCACCCAAAGCGAAAAACCCGGCACAGCGCAAAAACCTTCCGCCGCAAATTCCCGGCAGAGGTCGGGATTTCGATTTTCTGTTTACGAATCCCACTCGACGAGAAGAACCTCTTTTGAAAATACTTCCTATGAAATCCCGTTTTCTGCCGGGAATTTCCCGAAACAGTTTTCGAAGTCTCTCTTGGGTAAACTTTGTCAAAGAGGCAGTTTTGCAGGCTTCGACTCACTGAGAAAAGAATTTATAGATCCTCTGCCGTGAAAAATGGTCG # Right flank : CAGACGCACCGAGTCAGTACTGAACCATTGATCGGAACGGGGGGCGGCTGTGGGAAAGCATTGAGAGGGTCATATCCTCGAAACAGTTCTTGCCTTAAGCGTTGAAAGGCGCGCGTGTTTTCGCGCGCAGCTATGGGGGAGACCTGAACGGTTTGAGGAGCCTGGCCCCCCTCTCGAACAGCTCGGAGACCCTGAGGTTCTCCGCAACCACGGCAAGGGTGTCTGGCCTGCGCGCACTCCACGCTACTCTCCTGCACCTCGCGGCGAGCGCTAAGGCCAGCTCCCAGCACTGAGCCGCGCTGCACTCTACCAGCAGGCGCCCCCCGACGGCGGGGTCGGCCTCGGCTAGCCTGGGCTCGTCGAGCACGGCTGTCGGCGGTAACAGGGATCCGTCGAGCAACCCCACCCGCAGCACGGAGTAGCCGGCGTCGTGCAACCGTAGCATCGACTCGGCTAGGGCGTCGGCGTCGGCGCAGGACAGCCAGAGCTCGGCGGCGCCA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCAACTGTGAAAGCATTGAAAG # Alternate repeat : GAAGCAACTGTGAAAGCATTAAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //