Array 1 10-706 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHOD01000010.1 Klebsiella pneumoniae strain ID135_19 NODE_10_length_179927_cov_26.486_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 71 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 132 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 193 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 254 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 315 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 376 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 437 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 498 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 559 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 620 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 678 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCGATCTG # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 248117-248938 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHOD01000001.1 Klebsiella pneumoniae strain ID135_19 NODE_1_length_248967_cov_28.1899_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248117 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 248178 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 248239 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 248300 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 248362 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 248423 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 248484 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 248545 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 248606 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 248667 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 248728 27 93.1 32 ....--....................... CCGCAATAACAAAAATAAATGAGGGTTAAAGT 248787 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 248848 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG C [248853] 248910 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GGCATCTGTTGTGTAATGTTGAGTTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //