Array 1 159585-160272 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITG01000081.1 Hafnia alvei strain PCM_1202 1026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 159585 28 100.0 32 ............................ GTCCAGTCGGCAATCTGTTGCAACAGCACCGG 159645 28 100.0 32 ............................ AAGAACTAGGCCGGCAGGCGGTCGCATCAATG 159705 28 100.0 32 ............................ GCCAGCAATAGCAACTGATAACAGCGCAATAA 159765 28 100.0 32 ............................ TACTGACATTTAAGCGGGGTATAAGTCGCCAT 159825 28 100.0 32 ............................ GTTGCACATCCTGTAAGCGCAGCGGCAAGCAA 159885 28 100.0 32 ............................ TAGAAAAAACTTATCACTCACTGATAGTTGAA 159945 28 100.0 32 ............................ AATCATTCTCTCACCACGCCACGACGCGCGAT 160005 28 100.0 32 ............................ ACTCAAATCTCCCCCAGCTTGCAGCATCAAAC 160065 28 100.0 32 ............................ TGGTACGGGCTTAACAACTTGGAATGAAGTGG 160125 28 100.0 32 ............................ ACATTATGAAAAGCTGGGTTTTGTGCGCTCAG 160185 28 100.0 32 ............................ CAAGGGCGCGAAAACGTTATCGAGTTAACCGC 160245 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : ACTCACCATGGTTTGTGTTTAATTTTATTCGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGCTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTTGGTTTTTGCGGCGGAGGGGGAACCCCCTTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 168822-169388 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITG01000081.1 Hafnia alvei strain PCM_1202 1026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 168822 28 100.0 32 ............................ GCTGACTAAAGGCAACGGTAAAAATCCATATA 168882 28 100.0 32 ............................ CACGTCTGTGAGTGCGATGTAGGGCATTCTAG 168942 28 100.0 32 ............................ AAACTTCAATCCAGCAGAAGCCACAAAAAAGC 169002 28 100.0 32 ............................ GAATCTGACCCGCTGCCGCGCGTGACTTCATG 169062 28 100.0 32 ............................ TTTTACGAACCGTTTCTACAACTGCTGAAGTC 169122 28 100.0 32 ............................ ATCGAAGCATGGTGCGGTCGGGTATGGACGTT 169182 28 100.0 32 ............................ AGCAACGAGATCGTTTTTCGCGATTTCAAGCT 169242 28 100.0 32 ............................ GTATCCATGCCAATCTAGAGGATGTGTGAGTG 169302 28 100.0 31 ............................ GTGTTGCGCACACGCTGTGCCAGTTCGCGAA 169361 28 78.6 0 ...C.................CA.A.TT | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.9 32 GTTAACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCAGAAAAAGTGGCCTACCGAACGGTTAGTCGCGTGCAGGTAAAAAGCAGCGCGGAGAGGCTACGGCGCAGATCGGTGAAAAAAGGTTGGCTCACCGAAGAACAGGCTCGTCTGCAAATTCTCGATGCCAATGAACAGAGAACCTCGTTACCTTTTATCGTGCTTAAAAGTTTGTCTACTGAGCAAATGTTCCATCTGTTTATTCGTCTGGGCGAACTGCAAACGCAGCCAACGACGGGAAAATTTAGCAGCTATGGATTAAGCGCAACGGCAACGATACCGTGGTTTTAGTTTGTCATCCGCGTTGATATCCCCGTGCTCATCAACGGCGGGGATATGTTTTATCTAACGATCGAACAAATCTAACGAACCCTTTTTTTGAAGGTATATCTAAGTTGTTGATTTTGAATACCAGCAACTAATGCGCAGAAAAAAGGGTCAAACCCACTCAAAGTGAATTAATGGTTTGATAGGAAAAGGTTTTTGGCTGATTTTCAACA # Right flank : TATCATCTGCCCCATTTTCACTATACTTATTTCAGCGCTGCACCTTTGTTGCAGTATTTGAGTTAACTTTTGCTGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGCGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGTGATGAAATATGGTTTATCTGCAATCGACACCTACGGACGGTTGCGCTTTTACCTGACACTACCGATTTCAGGCGTCCTATTGTCTATTGAGTATGGGCGCGAGTGTTCCAACTGCTGTATTTGAATGAAAAACCATCGCCCTAGACGCCATCCTATTCCCGACGTATAAATATTCTCAGGCGTATAACGAATTAACCAACGTGTGAGGAGTTATTTGATGACAGCATTAGCCGTGGTTTTTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 242439-243187 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITG01000081.1 Hafnia alvei strain PCM_1202 1026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 242439 28 100.0 32 ............................ GACAGACAGATCATTAAGTGCGGTAACTTCAC 242499 28 100.0 32 ............................ AGCGCCAATGCGGTAGCTTGCTGAGACTGGCT 242559 28 100.0 32 ............................ GCATGGGTATTTGGATTCAGGGGCGTTTCTGA 242619 28 100.0 32 ............................ CTTCGGGGATTCCGTTCATTTCTAGCAATGGC 242679 28 100.0 32 ............................ ACTGTGACTTCTTTACGCCTAGTGGGAAGAGA 242739 28 100.0 32 ............................ TCAACCTCCATCACTTAGCATTGGTTAAGTAG 242799 28 100.0 32 ............................ GGTTGGAATCGGATCATGGCATGCCACATATG 242859 28 100.0 32 ............................ AAATCAAATTGCGTAGGGTTGTCGCAGCATCT 242919 28 100.0 32 ............................ ATACGAACAAACCGTATGAGCTCGGGTCTTTG 242979 28 100.0 32 ............................ GAGGGGGCTTGACCGCGCAAAAAGTCGCTAAT 243039 28 100.0 32 ............................ ATCAGGACCTTGTGTTTTGCAGCAAGGCTTTT 243099 28 100.0 32 ............................ ATCAGGTACCACCGGTTCCATGCTATTACCCC 243159 28 92.9 0 .....................A..A... | T [243179] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTTGGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCTGCCTAAGCGCTTTGGCTCCCCGCAGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCCATCTTTCCTGTGTGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACTAACCTTTTTTTGCCTATTTATAACCATTTGATTTTATGTGAAATTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : ACAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGTCTGTCATACAAATAAAAGCAAACGCTTTCCTAAATTATAAATCCCCATGAAAACATAACCATGCTAACTATATTTTCTGTGCCATTTTGTGGTGGGCTTTTCATTTCGTTAACAGTATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATCAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTGTGTAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCTGTCGTTTTTACTTCGGTGTTACCGAAATGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //