Array 1 182361-184798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007264.1 Thermococcus nautili strain 30-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 182361 30 100.0 37 .............................. CTTTTGTTGTCTTGTCCGCTACGTCGTCCGGCACCCG 182428 30 100.0 37 .............................. TCATGAAGTCGTCACGATTAAGGAAAAAGTGTAAAAC 182495 30 100.0 36 .............................. CTGTTTTTCAGTCGTCAAGCCAAGCAACGCAAAAAG 182561 30 100.0 37 .............................. GAAGTTCCGGCGTCAAATGTAACACTCTTTATCTGCA 182628 30 100.0 37 .............................. CTGTTTTTCAGTCGTCAAGCCAAGCAACGCAAAAAGC 182695 30 100.0 37 .............................. AATTTTCAGGTTCTAGCCAGCCCAAAGGACCAACTTC 182762 30 100.0 38 .............................. CCTCCTGTTGTGTTATAGTTATAGTCTCATTCTAACTC 182830 30 100.0 37 .............................. CGAACTCCGGTTTTCCTCATGCCATTTCGTGTGCTCC 182897 30 100.0 37 .............................. TATTGAGCATTGGATTACTTTTCGTTGGGAATGTAGA 182964 30 100.0 38 .............................. AAAAATTTTCAGTCCAGTTCCTTGAGAACATTAGAGAG 183032 30 100.0 36 .............................. GGGTCTCCCTCACCATTGACCTTGACGCCATAAGCC 183098 30 100.0 37 .............................. ATCCCCCAAACCATAGCCCAAGCCCGAGGCCAATAAG 183165 30 100.0 37 .............................. TATTTGTCTTTTATCGTCAATCTCAACGTCCCATCGA 183232 30 100.0 38 .............................. CCTCCTGCGCGGGATTCTCCTTTTCACAGCCCTACCCA 183300 30 100.0 37 .............................. AAAGTATGGCCCTGTGAAGAGGATTGGCTTTGAGCTA 183367 30 100.0 37 .............................. ACGAGGTTTGGGTGAAGCTCAGCGAGGGCGGTCTCTA 183434 30 100.0 37 .............................. GAGACGGGGAAACGACGGAGAGTAAAGAACTGGAGGG 183501 30 100.0 36 .............................. TGCGGCCAGCTCCGACCAGAAGCAGGCGATTCTGAA 183567 30 100.0 37 .............................. GTTATCATATCCCACTCGCCACGTGCTGTTCCTCCAT 183634 30 100.0 35 .............................. GATTTTGAGCTGAAATACAGGCAACCCCTAGCCAG 183699 30 100.0 37 .............................. GACCGGTGTCGAGCATCTGCTTGATTTCTGAAGCGTA 183766 30 100.0 37 .............................. CTCGTGCTTGGTCAGGCGCTTTCCTTCGGCAACCTTC 183833 30 100.0 38 .............................. TGACTGCTGTCGTGCCGATGGGGATGAGTGGCTTCCGT 183901 30 100.0 37 .............................. GAGGTGGTGGACAATGAATGAGCGCATCTTGAAGGAG 183968 30 100.0 36 .............................. GGGCGAGGAACATTGACATCGTTGGGTGGTTTGTGG 184034 30 100.0 35 .............................. AGGGTTGCGTTCTGCTGGAAGGAATCCCAGAAAGG 184099 30 100.0 37 .............................. CGCTATAAACCCGACGTGTTTAAACACGTTGCGATGT 184166 30 100.0 37 .............................. CTTTGCAGGGACGTCGTTTTATTATTCCGCATACCGG 184233 30 100.0 36 .............................. CCGTAAACGTGCTCGGAGACCCAGCGGGGCACTTCC 184299 30 100.0 37 .............................. ACCCCAAGGAGGATAAGAAGCTCGCCGAGAGCATGTT 184366 30 100.0 36 .............................. AGCGAACTACTTTCCCGGCTTAAATTCGGGAATAAA 184432 30 100.0 37 .............................. GGGTGCAGAGCTGCTGGACAAAGTAGGCGATAGGCTG 184499 30 100.0 38 .............................. GTACGTTGAGAAGGGCGTTTATGCAATCAAGTTCAGCG 184567 30 100.0 36 .............................. TTCACCGCCCAGAGCATTTACCACGCCAGCATTGAC 184633 30 100.0 41 .............................. AAGGGGCTTTCTTTTTGCGTGGCATCACTTAGCACCCCCCT 184704 30 100.0 35 .............................. CAAGGAGAACCGCGTCGAGTACCTGAAGAAGAAGC 184769 30 80.0 0 ..............TG.A....C.CA.... | ========== ====== ====== ====== ============================== ========================================= ================== 37 30 99.5 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AAAGTTTTAGGTCGAGGAATTTTAACTTTTCCGATGCATCACGCTCAGAACGCTCTGATTTTGGATAGCGACCACCATAGCGGAGAAAGCGCAAAAACCTTCCCCAATATCACCAGGAAATCGATTTTTATGCGCTAAAAAACTAGAACATATTGTTATATTTTTGTTGCAATCCATTCCAAATTTCCTTCCAAATACTGAGATAAAGGTGTGCCTGGTCCAGATTCGCCCAATCCCTGTTTAAATCTGACCGTTTTTCATAAAAGGAGATTTTATATCAGCTTCCAAGAAATCGCTGGCGCCAACCCCTCGGCATTTGACAGTACTTATTCCGGGATTGATACAAATCGGGTAAAAGACGGCATCGCCACCTTTGTAAGTGGGTTTATTCCCTCAACCACGACTAACAAGACCTTCGAAATTAGCACCAATCTCCGGAAAGGCTTAAATATCGAGAGGTCTTCTCTCTTTGTTGGGCGAAAGAATGAATTTCGCGCCCT # Right flank : GCCCCGTGCCCTTTGAGCTAAGTTCCAAAATTTAGGCAGAGAAAAAGGGCAAAAAGCCCTCAGAGAAGCATCCTCGCGTCGACGGCAACGGCGCCGTCCTCGTAGGCGAAAATCGGGTTGATGTCGAGCTCCTTAATCTCGGGAAGCTCGAGGGCAAGCTCGCCGACCTTGACGATGATGTCAGCCAAAGCCTCGATGTCCACCGGCTTCTCACCGCGCGCTCCGGCGAGAATCGGGTAGGCCTTGATTTCCTTAATCATCTCAAGGGCTTCCTCCTTGGTAATCGGGGCGACGCGGAAGGAAACGTCCTTGAGAATCTCGACGAAGATTCCACCGAGACCGAACATGATGGCCGGGCCGAACTGCGGGTCGCGTATCATACCGACTATGACTTCCTTGCCGAGCGGGAGCATCTTGTAGATTATGACGCCCCAGAGGTCGGCGTCGGGCTTGTACTTCTTGGCGTTCTCCATGATGGTCCTGAAGGCCTCCCTGGCTTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 455180-451542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007264.1 Thermococcus nautili strain 30-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 455179 30 100.0 37 .............................. AAGATGTTACGCACCTTAACCAAACAAACCACCCCCT 455112 30 100.0 37 .............................. GTTTAGTTCCCTGTTTATCTCCAGCTCCTTAACGCTC 455045 30 100.0 37 .............................. GTTCAACGCCACAGCACAGGATAAGGAAATTCTAATA 454978 30 100.0 37 .............................. AGCAACGCAAAAAGCCTTCATCTCGTCCCTGACCCGT 454911 30 100.0 37 .............................. TCATGTTCTCCTGACTCATCGAGCCTACCTTAACCTC 454844 30 100.0 35 .............................. CGTTATGTCGCCCATCTCAACCCCACCTTAACCGC 454779 30 100.0 35 .............................. TGCTCATTTGCAGTGAAAAATGCAATATTGCTACC 454714 30 100.0 37 .............................. GATTAAGAGGCCCTTTTCGACCAGGGCCTTAACCTTT 454647 30 100.0 37 .............................. CTTCTATTATCAGGAGGCCAGGAGTAGGAAGGTTCGT 454580 30 100.0 35 .............................. GCGTATTATCTAACTTCTTTGCCTCAATGTGGAGA 454515 30 100.0 35 .............................. TAGCGGCAACGTGGCGACTCTCTTTAACGAGACCA 454450 30 100.0 37 .............................. CGTTCTGCTCTGCCCTGTATGAAGTTGATGACTTCGA 454383 30 100.0 37 .............................. GAAGATGACTGAGTCAACGTCATAGAGCGAGAACTGG 454316 30 100.0 36 .............................. AACGAACTCACCCCAAGGCTTTCGTCCCTTGGCCTG 454250 30 100.0 36 .............................. TCCATTTCGTGGGATTGAGGTATTACACGGTTGATT 454184 30 100.0 37 .............................. GCGTTTCGCTTCCCCTTCTATCTCCAACGCCATGCGT 454117 30 100.0 38 .............................. TCGGGGTGCTGGAGGAGGTTCTGAACCTCATCAATGAG 454049 30 100.0 37 .............................. ACGAGCTTGAACGCTTCGGCTACGAGTGGGAGAAAAA 453982 30 100.0 36 .............................. AGGCTCCAGGCCGAAGCATACCCTGCGCTGAAAGTG 453916 30 100.0 37 .............................. ATATTCAAACGATTGTGGAGGGGCTGAATGAGAAAAT 453849 30 100.0 39 .............................. CTCCCTAAAGCAAAACTGAACAGGAAGCTGATTACCGCG 453780 30 100.0 38 .............................. TGGCAGAGCGGGTGTTATTAGAGTACGGGCTTATTGCA 453712 30 100.0 37 .............................. TTGAACCAGATGATGACCCTCTGCTTCGGCTCGTAAA 453645 30 100.0 38 .............................. CTGCATTTTCCATTTCAGCGACGCAATGACTTCAGTAG 453577 30 100.0 38 .............................. ATGTCCTGCTGACTCCTCAGCTTCTCTTTCAGCTGTGC 453509 30 100.0 36 .............................. CTGATGATGTTCACCCAATTGGAACGGCCTTCTCTG 453443 30 100.0 36 .............................. AAGGTCTCAGTTTTGCCGAACGAGCGTATTGTGATG 453377 30 100.0 37 .............................. AGGATCGCTCCACCTATATATCCACCAGCCACTCCAC 453310 30 100.0 37 .............................. GTTTTTCTGTCCACGTAGGAGAACCCAGCAAAACCCA 453243 30 100.0 36 .............................. GGAGCTACATTATCAGGATCCGCTCTAAGTCTCTGG 453177 30 100.0 38 .............................. CTTTTCTCGAAAGTGAGTGTATGAGCACCCTCATACAG 453109 30 100.0 37 .............................. CAAAAACCTGGAGCACTATCAGCGCTCACAATGCAGA 453042 30 100.0 36 .............................. CGGAGGATGCTCTGGGCATGGGAGCGGTGGCCATCC 452976 30 100.0 37 .............................. CACCTTATCAACAATCTCTCGCGCCTCGCGGTCGAGG 452909 30 100.0 37 .............................. CGAAATACTTCTTAAGGTCTATGAAGCCTCCCGAGGT 452842 30 100.0 37 .............................. GGGGATCCGCTCCCCAGTCCTTGACTTCTTGAAAGAG 452775 30 100.0 36 .............................. CAGGTGCTGATGGTCCTACTCGGGTGAGGGAGCTAT 452709 30 100.0 37 .............................. TCGTTATCTGAGAGAGTTACGGTTATGGTGGTGGCGT 452642 30 100.0 37 .............................. GTTGTTGAGCCTTCACAAAATACCGAAACATGTGCCT 452575 30 100.0 39 .............................. GAATGTAGGGCAAGTTCATGGCGAAGTCCTTGAAATAAC 452506 30 100.0 38 .............................. AGTCGTCGAGAAGGGATACTATAAAAACAGAACTGAGT 452438 30 100.0 37 .............................. TCGTCCCGTCAGTGTCAGGCGGATGCCCGGCGAACAA 452371 30 100.0 36 .............................. GCATCTACCTCAAGGGTGGAGAATCAAAGAAAATAG 452305 30 100.0 37 .............................. CAGGGCCTAAACGCTCAGCCAGCCAGACCTCGCCTTT 452238 30 100.0 37 .............................. GTATCTCAAGGCGCGCCTTGGAAGGCGCGTTGTCCGC 452171 30 100.0 37 .............................. CAAGAAAGGCGGTTGGAGGGCGAAGCTCCACAGCTGG 452104 30 100.0 37 .............................. TAAGCCACTCCTTACCCTTCACGACCCCACTTTTCTT 452037 30 100.0 35 .............................. AAACCTTCTCAACGTCCTCAGAGCCTGTCGCCAGC 451972 30 100.0 37 .............................. AGTGTTTGAAGTTGTATCAACACTTGTTGGCGTGTAT 451905 30 100.0 36 .............................. AGAAGCTCAAGCTCGATGGCCACGTCCGCCAGGGAA 451839 30 100.0 36 .............................. CACGTGGACCTCTGATAGTGTTACCGTCGTCCTATA 451773 30 100.0 38 .............................. TGGAGGAGCAGGATAGAGCACTTGGCTAAGAGAGGAGC 451705 30 100.0 37 .............................. TTTCTGTCTTGGTCTTGGTGGTGCCGGTAAATAGAAG 451638 30 100.0 37 .............................. CTATTACCAGGCTGGCTCCTGTACCCATGGCGCTCAC 451571 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 55 30 100.0 37 GTTGCAATAAGACTCGAAGAGAATTGAAAG # Left flank : CACTAAATATGCATGGTTTGATATAAAATCAGCCGGCACTTTTCTCAGGGGAGTATCACGGTGAGAAAGGGCCGAGACCAGAAGGGCCCCGGTAGAGAGGAAAATTCAAAACAAGCGGGCGGAAGAGGCGGTTGGAAATCGGATTTTACAAATCCTTAAATGCGACATAGTGTTCCAGATTCCAGGTGGAATGTTACGAAGTTTTTTTCGAAGCGAACAGATTGGATACGAGCGGGGAGCTTTCCACTGGAACCCTGATGAGGTTCGATTATTCCGCCAGACAAAACCAAAACTGCCTCAAAACCGACATTAAAACGCTCTCGTGAGTCTAGAAATCCCACCGGTGCCCCGGGCCAGGCATGAGAACGATACCCAATCCCCGCGAGAGACAACGTGACGGTCAGCACGACCGACCCCGGGTAAACGCAGGTTTCCAGAAAGGCTTAAATGTTCTGGTGTTCTCTTCTCTTCGTTGGGCGGAAGGACGAGTTTTGCGCCCT # Right flank : AAGTTTGAATTCCTCGCTTGCGGTATCAAGTTAAACGCTACAATAAGACCAAAGGGTTCTCAGAACAAAAAATAGGACATTCAAGGAGAAGGAACCCTCAAACCTTAATTCTCTTCCAGACCGTTCCCTGCGGTGTGTCCTCCAGCTGGATTCCAAGCTTTCTCAGCTCGTCCCTGATTTTGTCGGCCAAATCGAACTTCCTCTCCTTCCTGAGCTGGCTCCTTACCTCAACGAGCAGGTTTATGAGTTCCTCCTCGTTTCCGGCCTTCTGCTCCTTGAAGTAGTCCTCAAACAGGCCGAAGACCTCGCCGACGTCCTTGAAGAACTCCCAGGCCTTCCTGAGGATGCTCTCCTTCGGCTTTTCCACCTCGGTGAGGTATCTATTGATAGCGTTGCTGACCTCGAAGACCGCCTTCAAGGCCTCGGCCGTGTTGAAGTCGTCGTCCATGGCCTCGTAGAACTTTCTCCTCGCATCCCTTATGGCTTCGTAGGCCCTGAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 3 678833-678193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007264.1 Thermococcus nautili strain 30-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 678832 29 100.0 40 ............................. CAGCAATGATATGATGAAAGTTGACCGCTACTTCAGGAGT 678763 29 100.0 38 ............................. CCGTAGGTCTGGTTGAGGTTCTGCTGGGTGGCAAGAGT 678696 29 100.0 38 ............................. CTCCCACCCCTATCACCACTGTTCTTCTTTTTACGGCA 678629 29 100.0 38 ............................. CTAAGGAATAAACGGTGATGCTCATGGGGCTTGGCGAC 678562 29 100.0 38 ............................. CACTTCACGGGGGCCAGTTACACGATTCGTCAGGACGT 678495 29 100.0 39 ............................. GTTATTTCACTACCCGTGTTTACAAACTCTAGCTTATGC 678427 29 100.0 38 ............................. GAACGTTTTGGTGGGGTTGGCTATCATCAAAATTTTCG 678360 29 100.0 38 ............................. GTAGATTTAGTGATGATAGCCTCGCAGTGGGACAAAAT 678293 29 100.0 42 ............................. GGTGGCGACGGTTGGGGACGTGGTAGAGTTCCTGGTCGGCTA 678222 29 79.3 0 .............C.A.A....CC.A... | A [678202] ========== ====== ====== ====== ============================= ========================================== ================== 10 29 97.9 39 GTTGCAATAAGACTCGAGGAGAATTGAAA # Left flank : TCTTCATTGGATTTCCCTTAACGGAGCAAAAACAACCTTTTATTTAAGGTTTTTGGCGGGGATTTTGACGGGCGCGTGTTTAAAGCCCGAGATGACACGTGGCAAGCAACTTCCGGTATCTGCCCGCATAGGTTCTTCCCCTGGCGGAATTCCGGTTTATCGAGACGGATTTCTCCCGGTTCTTGCTTGGCAAGGGATTTGAAATCGAAAATAGGGTTAACAGTTTTGTAACGATTCGTGACAGCAAACTATGGATAACATGACGAGATTTTTTGAGGGGATTAAATAACTCTCCGAGAGAGCCCTGTTGGATTGAAAGCGTGCTCAAAACCGATTAATTTTTAAAAACATCTTGTGGCAGGTTTTAAACCCTTTTTAACGGGCTTTGGAGCCTCTGGAAACGGCCAGCACATCAGGGCATTAGTACAGTTTTCCAGAAAGGCTTAAATATTCCGGCGTTCTCTTCTCTTCGTTGGGCGGAAGGACGAGTTTTGCTCCCC # Right flank : GAGGTTAAAAAGCTCAGAAGAGCCACTGGTTCTCAATACACTCGTCGCACGGCGGCTTCTCGCCGGCTATTGCCTTGAACTTCTTGTAGATACACTCCGGCAGGCCGAGAGGACAGCGGTCCGGGTACTGGCCGGGCCGGACCTTAGTCGGGTCGAGCTTTATCTTGATGTAGGCCTCGTACTCCTCGACCTTCTTCCAGGGCAGGACCTTCGCCCCGTAAATCACGAGCCCGTCGTAAATCTTTGCGTAGTCACCGATGACGGCGTTCTCCTTGATGATTACGTCCCTGCCAACTACAACTCCCTCGCCGAGTATCGTGTCCTTCAGCTCGGCGCGCTCCTTGATTATGTCGCTCCCGATGAGGACCGAGCGCTTGATGTAGGCCCTGTCCTCTATCACGGTGTTCGGGCCGATGTAGGAGTAGGCCTTAATCTTGACGCCGTGCCCTATCTTGACGCCTTCATCGATGTAGACCGGCCCCTGAATCTCAACGTCTTCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 708771-705940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007264.1 Thermococcus nautili strain 30-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 708770 30 100.0 37 .............................. TTCCTTTCCTGATGTTCTCGCCTGTGGCTTAACCTGT 708703 30 100.0 37 .............................. CTTGAAAATCCAGCCCTTTAGCCACGAAAAAAGCTCA 708636 30 100.0 37 .............................. TCAGAAAGTTTTGATAGGCTGAAAAAGCGCGCTGAAG 708569 30 100.0 37 .............................. CTTAGAACCTCGTAGCCGTTCACCCTCACCCTCGTGT 708502 30 100.0 37 .............................. TCGTAAAGCTCAACGCGCTTAATCGCTACGTGCTGAA 708435 30 100.0 37 .............................. CAAACTTAAACCGATACACATACTTTGGCTTAGCCAT 708368 30 100.0 36 .............................. TACTTTTTCAGAATCCCCTGCTTGAGTTTCGAGGTA 708302 30 100.0 36 .............................. GATTTCACCAAATTTCACCGGGGGATTTCGGGGGAA 708236 30 100.0 37 .............................. TGACTTTATTGAGCAGTCTAATGATGTCGAGGAGAGT 708169 30 100.0 37 .............................. ACGCGTTCTCAGCCATATCACACCCTCCAGCGCTTGA 708102 30 100.0 37 .............................. CGAAGGCGCTTGAGGAGCAGGCGGAGGGTGTTGGTAA 708035 30 100.0 36 .............................. CCGTTTAAGGTTACGCTCCCGAGCTGGAAGGTGGGC 707969 30 100.0 37 .............................. GAACGTCCTTAAATGAGACTCCAGAGTTAAAGGCATA 707902 30 100.0 37 .............................. TCGCCGTGTGCAAGGCCTTCCGCTCTTCCTCCTTCAG 707835 30 100.0 36 .............................. GTGAGAGTCTTCACTAACTCATAGGCCACCACCTGG 707769 30 100.0 36 .............................. TGTTGCCATGCGGCTTTTTCTATCTCTCTGAATTTC 707703 30 100.0 37 .............................. ATTTCTTTCAGCCTGTCGAGGAGCTCAACCGCAAGGA 707636 30 100.0 37 .............................. ACTGGAGGACGAGGTTGTAGGCTTCCTCGGCGGTAAT 707569 30 100.0 38 .............................. ATTTGAGTATTGTTTCGTAGAGTTCGCGCTTTAGCTCG 707501 30 100.0 36 .............................. GGTACCCAATCCGTGAGCTCTCCAAAGGAAAGAAAA 707435 30 100.0 38 .............................. ATAAGGTGGGCCTGGAGGAGAGTTATAAGAAGGAGAAG 707367 30 100.0 38 .............................. AGAAGTCTATGACATCAGCGGCAACATGGTCAGAGTTC 707299 30 100.0 36 .............................. GGTAGTTGCCCTGTTTGTGGGGGGCTACTTAGTTTA 707233 30 100.0 36 .............................. TGGACGGCATCAACGCTCTGCCGACCTGGAGCGGAG 707167 30 100.0 37 .............................. TCCTCAGCCGCTTCGGCCTTCAAACGCGAAATATACT 707100 30 100.0 37 .............................. AAATCTGAGCGTCGTAATCTATCTTACCTTCGGTCAT 707033 30 100.0 37 .............................. CGATTTTCGCGTAATGTGTGCCCCCAATCCCGCTTTT 706966 30 100.0 37 .............................. TATCGCGAGTTTAATTCAGGAGTTGAAGGCTGAGACG 706899 30 100.0 37 .............................. TCCTCATACGGCGTCCCCCCCGTAAAGCACGGTGCTC 706832 30 100.0 36 .............................. GTTCGTTGTAAGCTCGTGCAAGGACCGGAATGAAAG 706766 30 100.0 37 .............................. CGATAACGTGATTTCAGTCGAAAAGGACGGTTCTGTC 706699 30 100.0 36 .............................. CTGGAGCCGGGGAGGGGATTTGAACCCCCGACCAAC 706633 30 100.0 35 .............................. GCGTCAGCTATCGCTTTTATGTGCTGTTCGAGCGT 706568 30 100.0 36 .............................. GATAAGGGGTGCGGTATCGGCCTGCAGAAGGAGGAA 706502 30 100.0 38 .............................. CTGGGGTTACCGCTACCGCTCCCGTGCCGCACGCCTCG 706434 30 100.0 38 .............................. GGAAGAAAAGCCCGAGCTGGAAAAACTCTCCCATGTTC 706366 30 100.0 36 .............................. ACCACAAGCCTGCTTTGTTCTTCCGCTTGCCAACGA 706300 30 100.0 36 .............................. CAGAAACGGAAGAAGGCAAAGAAGGAGGACCCGCGA 706234 30 100.0 37 .............................. AAGGAGCACGGTAACGAAACCTTCGTTGCGAAGCTCA 706167 30 100.0 37 .............................. ACTGGAGGACGAGGTTGTAGGCTTCCTCGGCGGTAAT 706100 30 100.0 36 .............................. GAACATAGAGCTGGATAAGGCGTCCCTTGTGGACAG 706034 30 96.7 37 .................A............ CACAACAGCTCATGGAGCCTTTTCACTATCCAAATGA 705967 28 83.3 0 ...............A.--.....C....T | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.5 37 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : TAATATGGAAGCTCAGGGAGCTTGGCTTTGATGTGTTATCACGCTGAAGTGCGTGGGTTTTTGAAGTGTAGGCATGTCTTGCTCCCATTTCAGTTTTAATCTGTCCTGTGGAGTTTGGGAATTGATTTTTGCTTTTTCATTGGTGTTGCCTCTTGTAATACTTTATGCTATTTAATGTAACAAATTTTCTTCGAAATGCTGAACAAAGCCCGGGGAGCCTATGGATTTAACCAAAACCTAGCGAAATCATGCCTTTCTGAGTTTAACCTTCTTAGTGGGGTTTGTCTTAAATTTGTTGGCTTATCCTGGCTCTGAAAACTAATTATCCCCGATGGAGGAGAAGTTTTTGAGTGCCCGTTGAACCTCTACACGCTCCTATTTTCCTTCGGGAGTCTTAATTCATGGGCCCAGGTGGCTCTTTTTTGGGAAATCCCCAGAAAGTCTTAAATATCCGGTAATCCTTCTTTCTTCGTTGGGCAAAAGGACGAGTTTCGCGCCCT # Right flank : AACTGCCACCTGGGAAACCCTTATCAGCGGTGGGGGTTTTCTTATCCCGGTGGTTTGAATGAAGGCCAGGGTAGTTGAACGCTTCAGGTTTGAATCCGCTCACGCGGTTCTCATCAACGGAAAGCCGGAGGAGATTCACGGGCACACTTTCCGGCTTGAGATTGCCGTTGAGGGGCCCCTCAGAAACGGCTACGTGATTGACTTCCTCGAACTGAGGCGCATCGTGGAGGAAATCATTGGAAGACTCGACCACAGGAACCTCAACTCCCTCTTTGAGAACCCGACGACAGAGAACATCGCGCTCTGGATTGCGGGGCAGGTTAATGCGAAGCTCCCCGAGGGCGTTTCTCTGAAGAGGCTGACCCTCTGGGAGGGCGACGAGAACGGGGTCGAACTGGAGTTCTGAGAAAATGTTTTTATCTTGTAGTCTTGATAAGGTGAAATGGTGAATAAAATGTCTGAGGTTGCCTCTGAGAAGATGTTACGGCTGTATTCTCATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 5 1463000-1461759 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007264.1 Thermococcus nautili strain 30-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1462999 30 100.0 37 .............................. TTCCTTTCTCCTTTGGCCAAGGTTGCCAATCTTGATA 1462932 30 100.0 38 .............................. TGCTGTTCTCGTTTGTTATAGTTATCGCTTGCCGGTAT 1462864 30 100.0 37 .............................. TGTTTACAAACTCTAGCTTATGCCACCCTGCCGACCT 1462797 30 100.0 38 .............................. TCATGAAGTCGTCACGATTAAGGAAAAAGTGTAAAACG 1462729 30 100.0 36 .............................. CTGTTTCTCAGTCATCAAGCCACGTCATACAAAATG 1462663 30 100.0 38 .............................. CATGCATTTTCTCAAGCAGATAAAGAAACTGCCGAAGG 1462595 30 100.0 37 .............................. AAGAATAGACTACCGCTTTTGTTGTCTTGTCCGCTAC 1462528 30 100.0 37 .............................. CGTTATGTCGCCCATCTCAACCCCACCTTAACCGCTT 1462461 30 100.0 40 .............................. GCGTTGATGTAAACGATAGCCCCAAGACTAAGGCCTGAAG 1462391 30 100.0 38 .............................. CTCGAAGATGACGATGAGGACCTCTCGGCCGTTCTCAT 1462323 30 100.0 40 .............................. TTCGCCGGCACTCTGACCATGTTGCCACTCAGGTCATAGA 1462253 30 100.0 37 .............................. CCCTGCCGACTTCGACTACGAGGCGTGGAAGAAGAAG 1462186 30 100.0 36 .............................. CTACGTGAAGCAAAGGGCAACGGACTACGTGCCCGA 1462120 30 100.0 36 .............................. GCGGTAAAATCGGACGCGACGGTGAATGTTTACTAT 1462054 30 100.0 35 .............................. ACGTTGGAGCTTTTGAAATGTCTATGATGAGCGAA 1461989 30 100.0 36 .............................. CTGGTGCTGGCCATCTTCCTGCTGGTGGACGAGAAG 1461923 30 100.0 37 .............................. ATGGCTTCGCCCCACAGCCGGGGGACGTTAAGGTCGT 1461856 30 100.0 38 .............................. GCAGGGAACGGAGGTGGAAAAAATGAAGGTGGTCGGAC 1461788 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 99.8 37 GTTGCAATAAGACTCGAGGAGAATTGAAAC # Left flank : TCCAAGGACGAAGGACGGCGTGCCGATTGAGTGACACCTCGACGAGTGCTGTTCTCCACAATTTTTCGGCTCGCGTTGGCCTTCCCTTTGAGAATGCTCTTACAGGCCCGCTCCGGAAATCGATTTTTGTGGTCATATAGACGTAACCTATCGGAACGGTTTTGTTGGTCTGTGTAACGAAATATTTTCGAACATTCCGAATGATGTCTTCCTGGCGCCTGAGCGACCGTAAAACCTGCTTAAATTGGATTGTTTCCAGGAGAAACGCAGGATAGCCGTTGGACGACCCAACAGAGGTCAGTAACACCTCGGGAAATCGCGGTAAGCTATTCCCTCGGCTGGGGGAAGCGCTAATCCGGGTTGTTCGCACTTGTGGGGGGTGCTCCTCGGGCGTTTGTACAACCAACAAAAGGCCAGGGTTAAAGTTCGATTTCCAGAAAGGCTTAAATATTGGACGGTCCGTCTTTTTCTGTTGGGCGAAAGGGCGAGTTTCGCGCCCT # Right flank : TCTAACTTCTTGATTTTTCCCCACCTATTGTCCGTTACATTCTACGGTAGAAGAATTTATAAAGGGGTCTCTTTACTGGATGCTGGTGGGACCGATGCTCAAGGTGCAGGTTCGCAAGCAAATCAAGAGGCAGAGGAAGAGGGGCAAGGTCTATAACGTCGAGCAGAGGCTTATTTACGTTCCCTCAAAGGCCGAGCTTCCCGATGAGGTTTACATCTTGACTCCAGAAGAACTCAGAGAGCTCGTCGAGCTGATTCCCGAGGAGAAGAGGCCGAGCTGGCTGGTGGCGGAATGAAGGCGCTTGTAATCTCTGTAGACAGAAGCAGGCAGAAAAGAACCATCTACGCGTTAGTTGAGGTAGATTACAACAATCTCAGACATATACGAGAGAAAGGCAGCTGGCTTAAGCACTTGGCGGAGCTTCCGAAGCAGGAGCGAAGGAACTACATTGCAAAATTCCCAGGCAGATTCGAAAAACTAAAACCCTATCTGGAGAAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //