Array 1 38341-39447 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUA01000016.1 Pseudomonas aeruginosa strain WH-SGI-V-07272 WH_SGI_V_07272_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38341 28 100.0 32 ............................ GACAAGAAACTGTTGGCCGAGCATCGGCACCG 38401 28 100.0 32 ............................ TGCAGCGCCGCGAACGGCAACGGCGGCGACGG 38461 28 100.0 32 ............................ TGGAACGCATTGCCTGCCTGCGTAAAGAACTC 38521 28 100.0 33 ............................ TGTGCCGTCCGCGATCTGGCGGATTGCCGGCTA 38582 28 100.0 32 ............................ AATCTGAAACGCATTGGCGAAATACACCACCG 38642 28 100.0 32 ............................ ACTGTTCGAGTCGCGAATGACTCGGTGAACTA 38702 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 38762 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 38822 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 38882 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 38942 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 39002 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 39062 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 39122 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 39182 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 39242 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 39302 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 39362 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 39421 27 92.9 0 .....................-..A... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : AGTGCCGGTGTCAAGTCTTTTGCGCAAATCACGCAGGGCTTGAAACCGTATATGGGACAGTACGTTAGCTCTTTTCGGGCCCGCTTTGCAGAACCACGGCTTCGTCGGCTAGGAGCCACATAAGAGCGTCGGGGGAGAAAGCCGCATCGCACTGTGTCGTGCTGATTGCCGAGGAACGGCGGGCCTGTTACGTCATCATAGCCCAAGAGGCTTGGCGGCATCCAGAATGAAGAACGCGCAGCCGGGGCTGCGCGTTCGATGGATGCCGTTGGCATGCGACGTCATCATGTCGGCTTCGATGGCGTGCTCCGGGTCGCCGTGCTCTTCCTGAATCCCCGATCCCCCGCCATGAACGCCTCCAGCATGTGCGGGATCAATTTCTCTGCATCGACCGCCTCGCCATACGCCTGCGCGTGCAACGCGGCGTAGCGTTCGAGGTCGGCTTTCAGGCTGGCCGGGCAGGCAAAGGTCATCTTGACGCTCTCGGTCTTGGGCAGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 455-1022 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUA01000021.1 Pseudomonas aeruginosa strain WH-SGI-V-07272 WH_SGI_V_07272_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 455 28 100.0 32 ............................ AGGTCGAGGTGGGCTCGGCGGCGATGATCGAT 515 28 100.0 32 ............................ GGTACGTGGTTTCGACCAACAGCACTGCCCAA 575 28 100.0 32 ............................ TAAAGGAGATTGCCATGCTGATCAAACTTCCC 635 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 695 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 755 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 815 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 875 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 935 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 995 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 416042-415293 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUA01000053.1 Pseudomonas aeruginosa strain WH-SGI-V-07272 WH_SGI_V_07272_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 416041 28 96.4 32 ..C......................... TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 415981 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 415921 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 415861 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 415801 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 415741 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 415680 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 415620 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 415560 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 415500 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 415440 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 415380 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 415320 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGTCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //