Array 1 6779-4760 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFQS01000011.1 Haemophilus parainfluenzae ATCC 33392 ctg1129647027312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6778 36 91.7 30 ..AA..A............................. GGCGTTATCTACCGGAACAGGCAAACAAGA 6712 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 6646 36 100.0 30 .................................... TAAAAAACCGCACTCTGTTTCCAAAGTGCG 6580 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 6514 36 100.0 30 .................................... TCACGGCGACTTATCATGGGCAATTATGAA 6448 36 100.0 30 .................................... GCCTAATCGAGCAAATTGACAGCCACGCGG 6382 36 100.0 30 .................................... TTTTTGCGTTCCCAAGTCTGGACGACTTGA 6316 36 100.0 30 .................................... GCTTACGTAATTTTTTAATATCGCCTTTCA 6250 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 6184 36 100.0 30 .................................... ATAGAGCTAAAGGCCTCAATGGAGTTTTTC 6118 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 6052 36 100.0 30 .................................... GTTATGTCTGGCGTATTGTGGCAACAAAAT 5986 36 100.0 30 .................................... CCACATCGGCACAGAATAACGTGCAGTTTC 5920 36 100.0 30 .................................... GCAATCCGTTGAAGTGCAAGGCGAGTTTAT 5854 36 100.0 30 .................................... TGTTTCAACGCTTCATTCAAAACAGTAAAA 5788 36 100.0 30 .................................... CAGGAGGCAAACGATACTTACTCAAATCTT 5722 36 100.0 30 .................................... GCAAGTTGAGTTATACAATGTCTATGCCGG 5656 36 100.0 30 .................................... TGAACAAAACGCAATGATCGAGCTTTGGGA 5590 36 100.0 30 .................................... GAGGTGAAAATGGAAGTGCACATTAATGGG 5524 36 100.0 30 .................................... CCGTTTTTCAGCGTTCTGCCTTTCGTCATT 5458 36 100.0 30 .................................... AATTAGGAATAAGTTTCGCACTCATATCTG 5392 36 100.0 30 .................................... CATGGTTCAAAACATTTGACATAGCAATTT 5326 36 100.0 30 .................................... TTTATTTCGGTCATACACTGACAACATCTG 5260 36 100.0 30 .................................... ATCTTAACTTTAAATACTTTAGAGCAAGCA 5194 36 100.0 31 .................................... TTTTATTAGCGTTAATTGCTATGCGTATTTA 5127 36 100.0 31 .................................... TTATCAACGCTCGGGAATCCACCAAAATTGA 5060 36 100.0 30 .................................... TGTTTGGATTGAGCAGATAACAAGGCTTGA 4994 36 100.0 30 .................................... AGATTTTGAGATTGCTCCCGGTGCAATCAT 4928 36 100.0 31 .................................... TTGGCCGTTCTCTCTTGATTTATCTTCGCTT 4861 36 100.0 30 .................................... GGATTGAATAGCCTTATTTTCATCTACCAC 4795 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.7 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : GTCTTACTATTGGTGAAGTAAAAGATGATGAATTCTGCGTGAATTTAATCCCTGAAACTTTACACCGAACCTTGATCGGTAAACGCCAAATTGGCGATTTAGTAAATATTGAAATCGATCCGCAAACGCAAGCGATTGTGGATACAGTGGAGAATTATTTAAAAGCAAGAGGGATATAGTTAATTAAGATTACTATAAGGAGGAAATATGTTTAAAGATGAAATTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGCCATATTTAATGTGTTTTTTCTATTTCCGCTTTCAATTATTTTAGTGCTGATTGGCGTTATTAATGGTGTAATATGGAATGTACTTTTAGGTATTGCATTTACTTACCTCGTATTTCTTGTCTTATTTAGGATATTAATCTATTTTTTATATAAAAAATGGGAGAGAGAGTATCAGAAACAGATGCGAGAAGAGAATAAAGTTAAATACATTATTATTAAATAATAAATTTATACTGTATT # Right flank : AGGGACGGCAAAAAGCCCCATACCGCAAGGTTTAGGGGCTTTTGTTTTATCTAAAAAAACGGTTAAAAAAGCAGTAATTGATTTGAATTGACCTTTTTTTCTTGCGTTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATTGAGCCCTCTTCAGGTAAGTGTGCGACGAGCCTTTTATGATGTTTTTCTAAAGCATCTCGCCCTTTAATAATTCGAGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGAAATTGGTTTGCAGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAAAACGATCATACGCATAAATACCTCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCTGGTAACTGCAATAATGTTGCACTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //