Array 1 4483414-4486063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072905.1 Klebsiella pneumoniae strain COL17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4483414 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 4483475 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 4483536 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 4483597 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 4483659 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 4483720 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 4483781 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 4483842 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 4483903 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 4483964 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 4484025 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 4484086 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 4484147 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 4484208 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 4484269 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 4484330 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 4484391 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 4484452 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 4484513 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 4484574 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 4484635 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 4484696 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 4484757 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 4484818 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 4484879 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 4484940 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 4485001 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 4485062 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 4485123 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 4485184 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 4485245 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 4485306 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 4485367 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 4485428 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 4485489 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 4485550 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 4485611 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 4485672 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 4485733 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 4485794 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 4485855 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 4485916 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 4485977 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 4486035 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32457-33336 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072906.1 Klebsiella pneumoniae strain COL17 plasmid pKpCol17ndm, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32457 29 100.0 32 ............................. ATTATCAGCCGTCGGTTTCCACCAGTCACGAA 32518 29 100.0 32 ............................. GGAATGTCCTTGATTATATAAAGGCTGTCAGT 32579 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 32640 29 100.0 32 ............................. TGGTGCTCTCAACCGTTACCCGCTGGCTGGAA 32701 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 32762 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 32823 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 32884 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 32945 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 33006 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 33067 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 33128 28 93.1 32 ..........-..C............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 33188 28 93.1 32 ..........-..A............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 33248 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 33309 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //