Array 1 2463651-2463412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFAH010000001.1 Hymenobacter sp. PAMC 26553 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2463650 35 74.3 41 .C.C...........CCCT..........C.C..T AGGAGGCAATGGGGAAACCCGAATCTACTAGCGGCGCGGCT C,T [2463616,2463644] 2463572 35 100.0 28 ................................... AGTTAGCCATCATCTTGGCGGCGCGACT 2463509 35 100.0 28 ................................... GTTCAGATGCCCTTGCATTGGTGCGGCG 2463446 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 4 35 93.6 33 GGCAGAGAGACGCGAAGGGTCGCGTCTCTACGGGC # Left flank : TATCTGTACGCAGGACCGGCAGCCGGCTTTTGGCACAATGGAAGTGCCGGGCAACGACTGGGATGCCGCTTTTGTGCGCCCTACCCCCCTGGGCCAGCGGGTGCTGGCTGGGTGGGATAGCATCCCCGTCTTCGCGCCGTTTGCCACTCCCGAGGCGTTCGTCCTCATGCCCGACCACGTACACGGCCTGCTGGTGTTTGAGAAACACGAGCCCGCCGGCCTGCCCCTGGCTTACCAAAATCAGTTTGGACCCCAGCGCGCTAATTTGGCCTCCGTGGTGCGCGGCTTCAAGAGTGGCATCACCACGTATGCCCGCCACCAGGCCCTGCCCTTCCAATGGCAAGCCCGCTACCACGACCGCATCGTGCGCTCGGCCGATGAGCTAATCCGCATTCGCCACTACATCGCCACCAACCCCAGCCGCTGGCAGCACGAGTGGGACAACGGCGAAGGCCTCTACCGCTGAAAAACGCTCCTCAGCGACAATATAACGCCCAAGT # Right flank : GTTTGGGCATAGCTTGGTTGCGCTGCCTGAAAACAAAAAGCCCCTGCCAGATACTGGCGGGGGCTTTTTTAAAACCGGACCGGCGGCTTACTCGCGGCCGATGGGGTAGTACGCCTTGCGGCCGTCCGGGTACACGCCTTCGACCAGCGCGCCGGAGTTCTCCTTAGCCTGGTCGAGGTAGGCTTGCACGTCGGCGGGCTTGCGCACCACGCTCTTATCGATGCGGGTGATGATGAAGCCATCGGCCATGCCCGTCTCCTTAAAATTGCTGCCCTTGATGCCCGTAATCTGGGCTCCGCCCTCAATGCCGAGGGAGTTTTGCAGGCGGGCATTCACGGGGCCGATTTTCGCGCCCTCGTAGCTCACGACCGCCTCGGCGGGTAGTTCGCGCACCACAGCCGTGGTGTTAGAGGCGTTGAAGAGGGTAGCATTGGCACTCAGCTTCTCGTCGTTGCGGAGGTAGCCCACCTTAATCTTATCGCCGGGGCGGAAGCGCGACA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGAGAGACGCGAAGGGTCGCGTCTCTACGGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.40,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 4469530-4463908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIFAH010000001.1 Hymenobacter sp. PAMC 26553 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4469529 29 100.0 36 ............................. TTCGCAATCAAGGCTCTAAGTGGATAAGCTATCATA 4469464 29 100.0 35 ............................. ACGAGCCCGGTTACGCGCTGTTGCGCGCCAAGCTA 4469400 29 100.0 36 ............................. ACCAGGCTGTTACGCTGTTTTACGACCCGGCTACCG 4469335 29 100.0 37 ............................. ACGGTAAAGAAATCGCCTGCTGGGCCTGCGCGGCCAG 4469269 29 100.0 36 ............................. ATGAGTGGGACTTACCGCCCACGCCTACTAATTTTT 4469204 29 100.0 36 ............................. TTCTACTTGCCGGTGCCGCCTCCTGTCGTTACTAGC 4469139 29 100.0 36 ............................. GTCTTTGACCATTTTCAAGGCGTTTGAGTGGAAACT 4469074 29 100.0 36 ............................. GATGCAGGCGGTCTTGAGGAGCTGCTTTAGCTGGTG 4469009 29 100.0 35 ............................. TTCCAAAGTACGTATATGCCACTAACATAGTACTT 4468945 29 100.0 36 ............................. TGGATGCCAGGCCCGCGGCCAGCGTGAGCTGGGTCG 4468880 29 100.0 35 ............................. ACCTGGCGCACGAATACTTTACGGCCGGCCCTGTT 4468816 29 100.0 37 ............................. ATTCGGGCCCTGCTCCGCCTAAGCTGTTACGCGCCAA 4468750 29 100.0 36 ............................. GCCTCATTACCACGAACCCCGGCCAGTCGTTTTCGG 4468685 29 100.0 36 ............................. TTGCCCGGCATCGGCGCGGCTACAAACAATTTGATT 4468620 29 100.0 35 ............................. GTTATGTCCGTGAACCGGACGCAGACCCCGACCTC 4468556 29 100.0 36 ............................. TTCCTAAAATTGCTCGGCTACGAGCCCCCTAAAGGT 4468491 29 100.0 36 ............................. TTTGTCCTCGCTTTTGTTCCTCAATACCATGTCTTG 4468426 29 100.0 36 ............................. TTGTGGTGCTCCTGGCGCTTTCTCCGCTGGTTCTCG 4468361 29 100.0 36 ............................. CGGTGAGCGTGAGCAGCATAGACCTGATTAGCGCCG 4468296 29 100.0 35 ............................. ACGTACTGTGCGACGCGGTGCAGCGCGGCACGCTG 4468232 29 100.0 35 ............................. ATTGGTTTTGCGGGCCGAGGGTATTGGTAAAAGTG 4468168 29 100.0 36 ............................. TTTCGTCACGGGTAGCCGAAAAGCGCAGGTCCGGGC 4468103 29 100.0 36 ............................. TTTTTGTATATGGCGTTCTGAATCATGAAAGCCAGC 4468038 29 100.0 35 ............................. TTGAAATGAGCGCGGCGCGGGTGATTTTGCTGCCC 4467974 29 100.0 36 ............................. CTGTTCAGATTCGGCCCGTCGAAGGTTTGATGGCCA 4467909 29 100.0 37 ............................. ACGAGGCCAGCAGCCCCGCCGGCCTGGCGGCGGCAAA 4467843 29 100.0 36 ............................. TTTTACGGTCGCGTAGCTTCAGGCCACGGTTCTGGA 4467778 29 100.0 37 ............................. TGGCCCCCGAGCCGCAGGGCACTAATCGAGCCGGCGG 4467712 29 100.0 36 ............................. GTGGGGTCGGCCTCCGCTTCGGGTTCCGGGTCGCGC 4467647 29 100.0 36 ............................. TTCCTGAGCTGGAAACGGGGTTTTCTTTTAATCGAG 4467582 29 100.0 37 ............................. CTATTGCTGTCCACCAAGTAGGCGTAGGCTTGCACGC 4467516 29 100.0 35 ............................. ATGCCGCCGAGCGCCTCAACGGCGAGATTGCCCAG 4467452 29 100.0 36 ............................. ACCTCAAAAAGCAACGCCAGCAGGCCCTGGAAGACC 4467387 29 100.0 36 ............................. GCTACCGTGAATTGCACCTTGCCGCCCACCATGCTC 4467322 29 100.0 36 ............................. GAGGAAAGGTCGCGGGGCCACTCAGGGCGAATGTAG 4467257 29 100.0 36 ............................. GTGTGCAGCGGCTCGAACAGGGGCGAGCGGAATTGG 4467192 29 100.0 36 ............................. AGAATACCTATACCTACGAGAAAGGCAGGCGTTGCA 4467127 29 100.0 37 ............................. TTTTGCTTGACGCTGGCATTACCGTACAGACTGGCAC 4467061 29 100.0 36 ............................. ACCAAAAAGTGATTGATGACCTGCTGGAGAAGCAGG 4466996 29 100.0 36 ............................. TTACGGGCGCGCAGCTGCTGCTCGACGGGGTACCCG 4466931 29 100.0 36 ............................. ACTCGGCCTTGGCCCTACTGGCCCCCAACGCCAGTG 4466866 29 100.0 36 ............................. ACCCTACCCCCTAGCCCTACCCCCGCCCGGCCCGTG 4466801 29 100.0 37 ............................. TTTACAAGCCACGCGCAATCGTCTTACCGTCAGGCGA 4466735 29 100.0 36 ............................. GCAAAAAGAGCCAGGAGGGCGTGAGCGCAGCGCAGC 4466670 29 100.0 36 ............................. CGAGGCCAAACGACTCGATTTCGCAACAGTGGCAAT 4466605 29 100.0 36 ............................. GTCTGAACGACAAAGCCCCGAAGCCGTGAGCGCCTG 4466540 29 100.0 36 ............................. TTTTGGCGCGGACAGCGGCAAGCTGCGTTACTTCCT 4466475 29 100.0 36 ............................. TTGGCGCGGCTGCAAAGGGGCTTCGCGCTGCTGCAA 4466410 29 100.0 37 ............................. TTTGTTCGTGTTTGGTTCGTGCTTTGTGCTTTTATTT 4466344 29 100.0 36 ............................. AAGCGTGGCCCCTCGACCTCCAAATACGCGGCCGAC 4466279 29 100.0 35 ............................. ATGATAACCCGGCTTTGCCCACGTCCCTACCCCTG 4466215 29 100.0 37 ............................. TTATTTTGGTTTGGGCCTGGCTTAAAAAAGCCGCCAG 4466149 29 100.0 35 ............................. ATTCCTTGAAATGCGGGGAGAGCTGCTTAGTTCCC 4466085 29 100.0 36 ............................. TACTTCTGGTCAATCCAGCGCGCCACGGGGTAGAAT 4466020 29 100.0 35 ............................. TTTCTTCAAACTGTGGACGCTGAGCGTGCGGGCGC 4465956 29 100.0 36 ............................. AACCAAGCGGCGGCGGCAAGCTGATGAAACTGCAAG 4465891 29 100.0 36 ............................. TTCTCGGCCATTCTGTTCGCCGTGGATATGGCTTGG 4465826 29 100.0 36 ............................. GGGATTGGCAAAATAAGGGGGCTGGTGAGCAGCAAA 4465761 29 100.0 36 ............................. AATTCGGGGACATCTCGGTGCATCCGCAGTTCATCG 4465696 29 100.0 37 ............................. TGGGGAAGCCGGCGCACTGGCTGATAAAGCCGTCCTG 4465630 29 100.0 37 ............................. TTGTTGAGGAGCCGTATCAGCACGTAGCTGTAATTGC 4465564 29 100.0 36 ............................. ATGGGTCCAGGCAGCCCGGTACTGGGTTGGGGGCGG 4465499 29 100.0 36 ............................. AACTCGACCCCGCCGGCCTGTGGCTGGCCAGCGGTC 4465434 29 100.0 36 ............................. ACAAGACAACCCGCGTGAATGCTGCCAGCCCCTTCA 4465369 29 100.0 37 ............................. CTATTCTGTTATTAGCCCTGGCCTACGTGGCCAAAGC 4465303 29 100.0 36 ............................. GCTACTAGCCCCGTGGTGCCGGTAGCCGCGGCCACC 4465238 29 100.0 37 ............................. GTACTACGCTACTGGTATGAAGAATACCTGCCTGAGA 4465172 29 100.0 36 ............................. TAGGCCTGCACCAGCGTGTCGCGGCTAGCCTTGGGC 4465107 29 100.0 36 ............................. TTTCTGCGTGAATTTACGGAACGGCTGCTGGCGGCC 4465042 29 100.0 36 ............................. ACTTCGCCCGCCTGCCGCGTGACCGTCCGGGGGGCG 4464977 29 100.0 35 ............................. ACGACTGGAAATTCCTGCAAGCCCGTTACCAGAAG 4464913 29 100.0 36 ............................. TTCTGAGGTCAATTTCTGGCAATGGATGGGCACCGA 4464848 29 100.0 37 ............................. CTGCTCAACGTTGCGCCGCCGCCGGACCCTACGGCCG 4464782 29 100.0 36 ............................. TGCTAGTCTCGCTTTTCTCTGCGGAACTGCACGTTG 4464717 29 100.0 36 ............................. GTAGCTGACGCACCTGACGCGCCCACCCCCGACCCG 4464652 29 100.0 36 ............................. ACCACGAGGACGACTACAAGAGCTTCTGGCTCTGGC 4464587 29 100.0 37 ............................. ACCTTCCTCTTCAAGGGCAAGGAACTGAACGCGGGGG 4464521 29 100.0 37 ............................. TTGCAAGGTCCCCGCCTGCTTGACCGCGCAACGGGAG 4464455 29 100.0 36 ............................. GTGGTCGTTCCGTTGCCGTTGCAAGGTCCCCGCCTG 4464390 29 100.0 36 ............................. ACGCTTACGGCCACGTGGCCCATTGGGACAGTCGCC 4464325 29 100.0 36 ............................. TTGCAAGGTCCCCGCCTGCTTGACCGCGCAACGGGA 4464260 29 100.0 36 ............................. GTGGTCGTTCCGTTGCCGTTGCAAGGTCCCCGCCTG 4464195 29 100.0 36 ............................. ACATCACCCGGCCGCAGCTCTGGCCTACCCAAGACC 4464130 29 100.0 36 ............................. GATTTTAGCCTGGTGGGCACGGACGCGCCGGCCGGC 4464065 29 100.0 35 ............................. TAGGTGTCGTCGTCGAGTAGTGCGTCCTCGGCCTG 4464001 29 100.0 36 ............................. GCGTAGCCCAGCGCACAGTCCTCGAAAATAAGAATC 4463936 29 79.3 0 .....C.....G............ATT.G | ========== ====== ====== ====== ============================= ===================================== ================== 87 29 99.8 36 GCTTCAATTGGACCGAGTGGAATTGAAAT # Left flank : GGTGGTAGGCCAGCCCCTACCCCCCTTCCACACCATGTACGTTATTCTCGTTTACGATATGAAGCAGCAGCGCGTGGGCCGGATGCTGAAGCTCTGCCGCCGCTACCTGCACTGGATTCAAAACTCCGTTTTTGAGGGCGAAATCAGCGAGGTAAAGCTGGCGGAGCTGCTGGCCAAGGCGCGCACCATTCTGAAGGAGGAGGAAGACAGCGTTATTCTTTTCAAGAGCCGCACGCACCAGTGGCTGGAAAAGCAGGTAGTAGGCCGCGAGCGCAGCCCGTTGGATACCATCCTGTGAGCCGCCGCATCGTCGGTCGGCTAACCAGCGCGGCCTTTACTGACCCCAAATGCCACGCAGAGCGCTAACCATCTGATTTACAGAGTTGTCTATCCCCAGGGTAAATCCTACTATTTGCCATCGACGACTCACGAGGTTTTTTAAAGTATTAACATGTGGGTTTCCCGAGCACTAGCGCGTATAATTGCGCTGGTTTTGGCGG # Right flank : GCTTCGATTACTTAGCGTATCACTTTCTAGCTGACAAAGTACAGGCTCGCTGACCAAAGCCAGTGGGCCTGTACTTTGTCAGTGTCAGAACCTTAGCCCGCTAAAAGTTGGCCACCACCAGCGCCTCGGCGCGGGCCAGGGCAGCAGGCAAGCCGGCCGCGTTTTTGCCGCCAGCTGTGGCGAAGAACGGCTGGCCCCCGCCTCCCCCTTGAATATCCTTGGCCAGGTCACGCACCAGGGTGCTGGCGTTGAGCTTGCCAGCTTTAACTATGTCGTCGTCGAGCATCACGGCCAGCTGAGGCTTGCCGTCGAGGTCGGCGCCGAGAAACAGCACGAGGCCGGGCACGGCCTGGCGCAGGTCGTAGGCCAGCTTCTTGAGGTCGTCGGCGCTGCTGGCCTGCACCTGAGCGGCCAGGAATTTCACGCTCCCCAGGTCCTTCACCTGGCCCACAAGCTGCGCCTTTTGTTGGTTGATTTGCTGCTGGCCAAACTGCTCAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATTGGACCGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //