Array 1 4181-189 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKON010000048.1 Olsenella uli isolate Olsenella_uli_MC2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 4180 29 100.0 32 ............................. GGCTATGAACGTTCCGAAAATCAAACCGTAGA 4119 29 100.0 36 ............................. ACGTTATCCATGAGAAGCAACTCTACTTNNNNNNNN 4054 29 93.1 32 NN........................... CTGTTTTCCAGCCATTTCTAGCCCCCTCCTTC 3993 29 100.0 37 ............................. TCATATGCTTGGTTAATCATCATCACCANNNNNNNNN 3927 29 96.6 32 N............................ CGTTCAAGCCGTCCAGGGTGTCGCTGTTCTTG 3866 29 100.0 32 ............................. GAACCTGACAAGTACTATTGCTACCAGATTCT 3805 29 100.0 32 ............................. CCTGGACCTTGGGATTCGGCGACTCGCCTGGG 3744 29 96.6 36 ............................T CCAGTCCCTTCCGCCAATCAGCAAGCCNNNNNNNNN 3679 29 96.6 32 N............................ ATGGCCAAAATCATCATTGGCAACGTCAAGGG 3618 29 100.0 38 ............................. CACCTCGAGAAGTCTTCGACCTTGATTCCGNNNNNNNN 3551 29 93.1 32 NN........................... TGCGAGCCAGCCGAATCGGCGTTGCTCGCCAA 3490 29 100.0 32 ............................. CTTCGCTGAGCTTGACACAATCCGCGCCGAGA 3429 29 100.0 34 ............................. GTCTTTGCGGTGCTCCAATTGCCGTTCNNNNNNN 3366 29 89.7 41 NNN.......................... GACCGCCGCAAGAACCAGCAGGCGGGCGAGTGANNNNNNNN 3296 29 93.1 32 NN........................... CGGGGCGCTTCGCCCGTGCCTGTATCGCTATA 3235 29 96.6 37 ............................T CGCTGCATCACCAGACAGAGCAACCTCGANNNNNNNN 3169 29 93.1 32 NN........................... GGTCACCGACCATGCGCGCGTATCTAAGTGGG 3108 29 96.6 32 ............................T CCAGCCAATTAACCCGGAAAAGGCAATCTTCC 3047 29 100.0 32 ............................. GGCGCGAAGGGAGAAACCGGAGCGACCGGCCC 2986 29 100.0 35 ............................. GTGGTGACCAAATGGGGCGCTTACCTTANNNNNNN 2922 29 89.7 33 NNN.......................... CTTCCGGCGAGTTCGGAAGCCTGCGAGANNNNN 2860 29 82.8 32 NNNNN........................ GAGGTTAACGGCTTTTACGCCGACGACATTGA 2799 29 96.6 32 .....................G....... CGACGGATTGAGTCTACACATTTCCTACACAT 2738 29 100.0 37 ............................. TGAGGTTCAGGCCGTCGAGCGTGTCATAGNNNNNNNN 2672 29 93.1 32 NN........................... CGCATTCTCACAAAGCACTTCACGCCCGGGCG 2611 29 93.1 32 .........................C..T TCTCTCTTGACGCAACGCAAATCACGTGGATA 2550 29 100.0 32 ............................. ACGACCGAGCCGGGCGTCTTCGGCTCAGAGAG 2489 29 96.6 32 ............................T CGCCAAGACCTCAACGAGCGGGCTTGTGGATA 2428 29 100.0 47 ............................. GTCGGGGATTTTCAATTGAATCGAGGTTNNNNNNNNNNNNNNNNNNN 2352 29 93.1 32 NN........................... ATCTGGTGGGGCAAGCTCACCGAAGCCGATGA 2291 29 100.0 37 ............................. GGGACTGAGCATCTACAACGACACGAAGGNNNNNNNN 2225 29 93.1 38 NN........................... CAGCAGGCGGGCGAGTGGGAAGACGTGCNNNNNNNNNN 2158 29 96.6 32 ............................T AGGTAACGTACCCCAGCAGAGAGTCATCGCCA 2097 29 96.6 32 ............................T CAGCCGTTGCGGTCATAGTCGCGGCGGCGTTG 2036 29 100.0 37 ............................. GACCTCATCCGAGTACAAGCAGCAGGCGNNNNNNNNN 1970 29 93.1 32 N...........................T CCCTCCGCGTCGTGCCCCACCTTCGGCTTGAC 1909 29 96.6 38 ............................T ACCACGCGAAGTTGATGGTCGGGTCGTAATNNNNNNNN 1842 29 93.1 32 NN........................... GGTAATGCTGTTCCTGGTGCGCATGCCCTTGA 1781 29 100.0 32 ............................. GGCCTTCTAGGATGCCGTTTAAGGCTCCTAAA 1720 29 100.0 38 ............................. CCGGCACAGGTAGACGCGCTCTTTAGGNNNNNNNNNNG 1653 29 96.6 32 ............................T GATTAACTACGTCGAATTGAACGGCGAGAAGA 1592 29 100.0 34 ............................. TGGAATGCGTGCACCCCCAAGATTCTTAGCGACA 1529 29 100.0 33 ............................. GGGGAAGAGCAGAAGTTCTACGTCCANNNNNNN 1467 29 89.7 37 NNN.......................... CGGCCATGCTACTCGCCGCCCTGCGACTTNNNNNNNN 1401 29 93.1 34 NN........................... GTCAAGGCCAACGTCCCGCAGAGCTTCANNNNNN 1338 29 86.2 32 NNNN......................... CTCGGGTCGCTCCCCATGAGCGCCCCGAACAC 1277 29 100.0 32 ............................. TTTGACTGGAGCGCGGAGAAGTCGATACCGTG 1216 29 96.6 32 ............................T CGAAAGATAGGAGTACAAATGTTCTACGGACA 1155 29 100.0 32 ............................. AAGGAGAAGCACGAGCAGCTAGTCGCTTCGTA 1094 29 96.6 45 ............................T CGCACGCCAGACCGACGACGGCATCTGCAANNNNNNNNNNNNNNN 1020 29 82.8 32 NNNNN........................ TTCGCGGCATACGAGGTCGAGCGGGGCACGGC 959 29 100.0 32 ............................. TGTGAGTTGTTGATAAGCGAGTTGCTGACCTT 898 29 100.0 32 ............................. TGGAACCAGCTCGCGGACGCGATTCCCGGTGC 837 29 96.6 32 ......................C...... ATCAACAGCGACCAAATTTACAAATCGTATGA 776 29 100.0 32 ............................. CCGTGGCCGCATGAAGTCCCGCCAGCGACTGA 715 29 100.0 32 ............................. TTCGCCTTGCATTGGCCACCACGAGACGCACG 654 29 100.0 35 ............................. GCCCATGCTAGCCCTCCTTCTTCTCGGCNNNNNNN 590 29 89.7 36 NNN.......................... GGCCACGCGCGCCGAGAGGTGAGGGCGTNNNNNNNN 525 29 93.1 32 NN........................... CGCTACCAGGTCTCGACCGACGTGCCGAACGG 464 29 100.0 32 ............................. CAGTGCTGCGACTCCGCGTCGACGCTCACGCT 403 29 100.0 35 ............................. ATCGCGCAGGACAAGAGCGTCGCCGCGANNNNNNN 339 29 89.7 32 NNN.......................... CGAGACGTAGCGAGGAGCTTCGGCATCGACGC 278 29 100.0 32 ............................. AGCCTCGACACCGACAAGCCCGTTGTCGAGCT 217 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================== ================== 64 29 96.4 34 GTGCTCCCCGCGCATGCGGGGATGATCCC # Left flank : TGTGTCTGCGAGGGTGAGGGAGCGACTTTGGGCGAGGGTCCTCGACTTGGCTCGCGAGGGGCGGGCAATCATGGTGTATTCGGCTCGCAACGAGCAGCATTTGGCGTTTGAGGTGTTTCAGCCAGACTGGAAGCACGTCGATGCCGAGGGTGTTGGCCTCATCAAGAGGCCGATGGGCACGGATGACGCGACGCTTGTCGGCACGAAGAAAAAGGGCTGGAGCACGGCAAGCAAGTACAGGAGGGCCAAGAAGTACGGGGCGTGAGACAGTGGATGGGCCCACATCCCGCTCGGCAATGCCGCCGTGAGGGCCGGAAAGCGCGGGGCATGAGCTGGTGATTGGGGTGTTTTTCTGTCCGCTTGTCCGCCTCTGATGTGATTGGTAAAGTGAGTGTGATTCGCTTGAGTCCTGGGCAAAGCCGCAGGTATTCANNNNNNNNNNCTCCCCGCGCATGCGGGGATGATCCTCGCTTCGTACGACCGCGAGAAGTCCGAGCTTG # Right flank : CCCGGAAAGTACTTCTACGACTTCGAAATNNNNNNNNNNGCTCCCCGCGCATGCGGGGATGATCCCAACAAGCTGCTCGAAATCAACTTCCAGAACGCAGTGCTCCCCGCGCATGCGGGGATGATCCCGGGCTTGGCATAGCGGACACCGCTTTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1482-1207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKON010000047.1 Olsenella uli isolate Olsenella_uli_MC2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1481 29 100.0 32 ............................. GATTGAGACGTTTGCGAAACGCATCTTGCCAA 1420 29 100.0 32 ............................. GCCTTGGCAACGCCCATCAACAAGGCGACGTT 1359 29 100.0 33 ............................. TGACGTCTGCTGCCGAAGGCGGAAGGCGCGTTG 1297 29 96.6 33 .....................T....... CCAGGCCGTCGCTCGGTGCCTTCGCGTGGGCGC 1235 29 96.6 0 .........A................... | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.6 33 GTGCTCCCCGCGCATGCGGGGATGATCCC # Left flank : TCCCCGCGCATGCGGGGATGATCCCCGGCTTACCAGAGCGGGCGCCCCGTCTACNNNNNNNNNNGCTCCCCGCGCATGCGGGGATGATCCCCACTTTTTTACGACGGCAAAGTCATTTGGGCGGTGCTCCCCGCGCATGCGGGGATGATCCTCCTTGCCAAGCGAGCAAGCCAGACAGACNNNNNNNNNNGGATCATCCCCGCATGCGCGGGGAGCACAAAGGCCACCCGTGCGGATGGCCTGGTTCAACGGGATCATCCCCGCATGCGCGGGGAGCACCTTTGAATGAGCAGGCAGTCGAGATTCTGCGCAGGATCATCCCCGCATGCGCGGGGAGCACGATTCGCTGATTCCGTATGCCAACAACCCGCGAGGATCATCCCCGCATGCGCGGGGAGCACTCACCTTTTGCCCCTTGTACATGCCAGCCCNNNNNNNNNNGCTCCCCGCGCATGCGGGGATGATCCCCGCGCCGAGGATGCGCAGCTCGAAGCCCTCGG # Right flank : GGCAGCGCCAGGCGTGATGGGACCGGTCNNNNNNNNNNTGCTCCCCGCGCATGCGGGGATGATCCCGCGGACAGCGGCGGGCGTAGGGCCCGCCTGACGGTGCTCCCCGCGCATGCGGGGATGACCCCTCGGCGGTGAGACGCCTCGTAGACGCCTGCCGCCACTGGCCGACACCTCTTGGGGATCGCTCTCGCGGGTTGGTAATCTTGCGTTCTGGATCATTGCGAGCCGCCTCGATTGGGAGGGTCCATGGCTAGAAGGAGGAGGGCGACGGGTCCCGGAGCCCTGTGGCGCGCTCTCGTGTGGGCGGCGGGCGTCTGGTTGCGGGTTGGCCTGTGGTTTGTGGGCTGGTTCGTGGCACTCTGGCTCATCGCTATGTTCTCGCGCCACGTTCTCGGTATCGGGTAGTCGTAACGCTCCTCTATCGTGCTTCCTGCTCATGCGGGGATGGCCCCACGATGGTCTCGGAGAACGGGCCTCCTCGACGCGCTCCTCGCGTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1581-1792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKON010000047.1 Olsenella uli isolate Olsenella_uli_MC2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1581 29 100.0 32 ............................. CGCGGGTTGTTGGCATACGGAATCAGCGAATC 1642 29 100.0 32 ............................. GCGCAGAATCTCGACTGCCTGCTCATTCAAAG 1703 29 96.6 32 ............................C GTTGAACCAGGCCATCCGCACGGGTGGCCTTT 1764 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCCCCGCGCATGCGGGGATGATCCT # Left flank : GGTCATCCCCGCATGCGCGGGGAGCACCGTCAGGCGGGCCCTACGCCCGCCGCTGTCCGCGGGATCATCCCCGCATGCGCGGGGAGCANNNNNNNNNNGACCGGTCCCATCACGCCTGGCGCTGCCGGGATCATCCCCGCATGCGTGGGGAGCACGCGCCCACGCGAAGGCACCGAGCGACGGCCTGGGGGATCAACCCCGCATGCGCGGGGAGCACCAACGCGCCTTCCGCCTTCGGCAGCAGACGTCAGGGATCATCCCCGCATGCGCGGGGAGCACAACGTCGCCTTGTTGATGGGCGTTGCCAAGGCGGGATCATCCCCGCATGCGCGGGGAGCACTTGGCAAGATGCGTTTCGCAAACGTCTCAATCGGGATCATCCCCGCATGCGCGGGGAGCACCCGAGGGCTTCGAGCTGCGCATCCTCGGCGCGGGGATCATCCCCGCATGCGCGGGGAGCNNNNNNNNNNGGGCTGGCATGTACAAGGGGCAAAAGGTGA # Right flank : NNNNNNNNNNGTCTGTCTGGCTTGCTCGCTTGGCAAGGAGGATCATCCCCGCATGCGCGGGGAGCACCGCCCAAATGACTTTGCCGTCGTAAAAAAGTGGGGATCATCCCCGCATGCGCGGGGAGCNNNNNNNNNNGTAGACGGGGCGCCCGCTCTGGTAAGCCGGGGATCATCCCCGCATGCGCGGGGAGCACCAGCGAACGCCTGGGCCGCCCTCTCCAACCTCGGGATCATCCCCGCATGCGCGGGGNNNNNNNNNNACGATGTCCGACTTCACGTAAGGCACGGGATCATCCCCGCATGCGCGGGGAGCACTACACCAAGCAGAACACTGATTAAAGGAGGCAGGGATCATCCCCGCATGCGCGGGGAGCNNNNNNNNNNATGCGCGACATCGCATCCCGCATCCGCAAGGGATCATCCCCGCATGCGCGGGGAGCACGTGATTGCTGGGCTTACGGCGAGGACGCTGGGGGGATCATCCCCGCATGCGCGGGGAG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2295-1830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKON010000047.1 Olsenella uli isolate Olsenella_uli_MC2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2294 29 96.6 32 N............................ CCCAGCGTCCTCGCCGTAAGCCCAGCAATCAC 2233 29 100.0 37 ............................. TTGCGGATGCGGGATGCGATGTCGCGCATNNNNNNNN 2167 29 93.1 32 NN........................... TGCCTCCTTTAATCAGTGTTCTGCTTGGTGTA 2106 29 100.0 31 ............................. GTGCCTTACGTGAAGTCGGACATCGTNNNNN 2046 29 82.8 32 NNNNN........................ GAGGTTGGAGAGGGCGGCCCAGGCGTTCGCTG 1985 29 100.0 37 ............................. CGGCTTACCAGAGCGGGCGCCCCGTCTACNNNNNNNN 1919 29 93.1 32 NN........................... CACTTTTTTACGACGGCAAAGTCATTTGGGCG 1858 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 95.3 33 GTGCTCCCCGCGCATGCGGGGATGATCCC # Left flank : GCTCCCCGCGCATGCGGGGATGATCCCCGAGGCGTTACCGCCTACGCGATCGGCATNNNNNNNNNNGCTCCCCGCGCATGCGGGGATGATCCCTCAGCCGCCACGTCGTCGTAGCCCTGCACGATGTGCTCCCCGCGCATGCGGGGATGATCCCTCGGATTCGGCTGGCGTGGATGTTTCACATGAGTGCTCCCCGCGCATGCGGGGATGATCCCTCCGAGTACTCCGCCACTGAGGCCAAGCGCGTGTGCTCCCCGCGCATGCGGGGATGATCCCTGCTCGCGCGGAATCACTGCCGCACCTCATCCGTGCTCCCCGCGCATGCGGGGATGATCCGCCCTGGGCGTGCTGGATAGCTAACCTGGGGCTGTGCTCCCCGCGCATGCGGGGATGATCCCTTCGCGTGGTACTACTTCATCGGTCGGNNNNNNNNNNGATCATCCCCGCATGCGCGGGGAGCACTTTTGTTGGCAGTCTTTGGCAATCTCTGGNNNNNNNNN # Right flank : CCTTGCCAAGCGAGCAAGCCAGACAGACNNNNNNNNNNGGATCATCCCCGCATGCGCGGGGAGCACAAAGGCCACCCGTGCGGATGGCCTGGTTCAACGGGATCATCCCCGCATGCGCGGGGAGCACCTTTGAATGAGCAGGCAGTCGAGATTCTGCGCAGGATCATCCCCGCATGCGCGGGGAGCACGATTCGCTGATTCCGTATGCCAACAACCCGCGAGGATCATCCCCGCATGCGCGGGGAGCACTCACCTTTTGCCCCTTGTACATGCCAGCCCNNNNNNNNNNGCTCCCCGCGCATGCGGGGATGATCCCCGCGCCGAGGATGCGCAGCTCGAAGCCCTCGGGTGCTCCCCGCGCATGCGGGGATGATCCCGATTGAGACGTTTGCGAAACGCATCTTGCCAAGTGCTCCCCGCGCATGCGGGGATGATCCCGCCTTGGCAACGCCCATCAACAAGGCGACGTTGTGCTCCCCGCGCATGCGGGGATGATCCCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3796-2397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKON010000047.1 Olsenella uli isolate Olsenella_uli_MC2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3795 28 93.1 32 -...........................T ACACGGCCCACTTCTCGATGGCCGCGCAGGAC 3735 29 96.6 32 ............................T CCTGGTGTACTTTGCCATGAGACCCCCCTAGA 3674 29 100.0 32 ............................. TTCATCGACCCGGGGGGAGAAAACGATGATTA 3613 29 100.0 36 ............................. TGGGAAAGGACATCAAAATGTGGTGGAANNNNNNNN 3548 29 93.1 36 NN........................... CTGGGGGACGTCACGAGGGTGAATTGGANNNNNNNN 3483 29 93.1 32 NN........................... TTGGCGCTGTTCATTGTCGCCATCGCTTTGAT 3422 29 100.0 36 ............................. TTGCGCTGCGACTTCAGGAACCCGCGCTNNNNNNNN 3357 29 93.1 38 NN........................... CTGAACGCCGTCGCTGGCGGCAACTCCGATNNNNNNNN 3290 29 93.1 32 NN........................... CTTGCGGTGGGTCAGCGGCTTCTCGTCGGTGC 3229 29 100.0 32 ............................. AACGTCATCGCGACGGTCACGGGGTGGGTTTC 3168 29 100.0 34 ............................. CTCGGCTACGAGAACGCCCGCCTCGCNNNNNNNN 3105 29 93.1 32 NN........................... CGCCGCCACGGCCGCGACACCGACCTTGGCAG 3044 29 100.0 36 ............................. AAGACCACGGACTCGGCAAACCGCACGNNNNNNNNN 2979 29 96.6 32 N............................ CTACCCATACCGCGACCGCGAGACGCTCGCGG 2918 29 100.0 32 ............................. GGTGGGCGCATCGAGCAGGTCTGGAGCGTTGA 2857 29 100.0 32 ............................. AGATACAGGGACGAGCGGCCGACGATCGTGAC 2796 29 100.0 37 ............................. CGAGGCGTTACCGCCTACGCGATCGGCATNNNNNNNN 2730 29 93.1 32 NN........................... TCAGCCGCCACGTCGTCGTAGCCCTGCACGAT 2669 29 100.0 32 ............................. TCGGATTCGGCTGGCGTGGATGTTTCACATGA 2608 29 100.0 32 ............................. TCCGAGTACTCCGCCACTGAGGCCAAGCGCGT 2547 29 100.0 32 ............................. TGCTCGCGCGGAATCACTGCCGCACCTCATCC 2486 29 96.6 32 ............................G CCCTGGGCGTGCTGGATAGCTAACCTGGGGCT 2425 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 97.5 33 GTGCTCCCCGCGCATGCGGGGATGATCCC # Left flank : | # Right flank : TTCGCGTGGTACTACTTCATCGGTCGGNNNNNNNNNNGATCATCCCCGCATGCGCGGGGAGCACTTTTGTTGGCAGTCTTTGGCAATCTCTGGNNNNNNNNNNTGCTCCCCGCGCATGCGGGGATGATCCCCCCAGCGTCCTCGCCGTAAGCCCAGCAATCACGTGCTCCCCGCGCATGCGGGGATGATCCCTTGCGGATGCGGGATGCGATGTCGCGCATNNNNNNNNNNGCTCCCCGCGCATGCGGGGATGATCCCTGCCTCCTTTAATCAGTGTTCTGCTTGGTGTAGTGCTCCCCGCGCATGCGGGGATGATCCCGTGCCTTACGTGAAGTCGGACATCGTNNNNNNNNNNCCCCGCGCATGCGGGGATGATCCCGAGGTTGGAGAGGGCGGCCCAGGCGTTCGCTGGTGCTCCCCGCGCATGCGGGGATGATCCCCGGCTTACCAGAGCGGGCGCCCCGTCTACNNNNNNNNNNGCTCCCCGCGCATGCGGGGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NNGCTCCCCGCGCATGCGGGGATGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //