Array 1 901681-901478 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JH791774.1 Helicobacter pylori HLJHP193 Scaffold1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence           	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	==========================	==================================	==================
    901680	    26	  88.5	    34	......CA....A.............	GTGTCGTTATTAAAGTTTAAACCTGTATTGTCAG	
    901620	    26	  96.2	    31	.............G............	TTGCTGTTTTCAAAAACAGATTGAGTGCTAT   	
    901563	    26	 100.0	    34	..........................	GCGCTGTTGTTGAAGTTTAAGTTAGCGCTGTTAG	
    901503	    26	  84.6	     0	.G..T..A.................G	|                                 	
==========	======	======	======	==========================	==================================	==================
         4	    26	  92.3	    33	TAAAGTTGTAAGTCCCTTGATTGAAA	                                  	       

# Left flank :   TAAACTTTGAGCGTCTTTTTTGATAGTGGTGTTTTGATTGTTGGTGTAGCCTGTATCATTGCTTGCGATCTTATTATCACTAGTAGCGTTATTTAAAGCGGTTTGTGAGCCAGTCAAGTCTTGTTGGTAGGTTGCTTGGGCTTTGGCTTGTAAATCGTCCCCTAAAAATTGGGTGGTAATGGACTGATTGTTAAAGGTTTCTTGTAAGGTTTCATCTTGCCCGTTAATGTCAAAGGTTACATCATAAGTGTTACTACCCACTTCAACATGGCTTATAGCTTTATCGCCCTTATAGTTGATCAAATCCCACAAATAGCTTTGATAAACCCCATATTGGATGGTCTTGTTTGTGGTGAGAATGTCATAGGTTTGATTGCTATTAAGGGTTTGATTGAGGTTAAAAATCGCACCAGAACCAAAGGACACGCTACCTTTAAGGCTAGCAAAAGGCGAACTTGAGTTTAAAGTGTTAGCGCCTGAAAAACTCACCTTGCTGGTAT
# Right flank :  TTCGTTTTGTCAAAAGAGAAATTGCTGTTAGTCCCATTCCCGCTGAAACTAAAGCCCCCATCAGTATCATCTGTAAAGCTAGAAGCGCTCACATTGATGTTAGAGCCTTTAAAATTCATGTAAGAGTGCTGTGTTCCTGCATCGCTGTTATCAAAGCTGGCTTGATTGATAGTGATATGGTTAGTTGCATTAAAATTGAGAGTGGCCCCACCGCCAGTAGAAAATGAGTTGCCGGTTGTGATACGGCTAGAATTAAAATTAATCGTTTGAGNNNNNNNNNNCCTCCATTAACACCTGTGCCTCCAAAGCGGATATTCCCTCCCACATTAAGCGTGCCATTATTGAATTTTTGCGTGAAACTAGCCCCACCAGCACTATAAGTGGTAAGGGTGTTTAAATAGTAAGTCCCAGAGCCTTGAGCGCTATTAAAAAGGCAATAAGAGTTGTGCGTGGGGGAATTAGAACCGCTTTCAATATTGTCATGATAACCCCAAGACGAC

# Questionable array : NO	 Score: 3.66
# 	Score Detail : 1:0, 2:0, 3:3, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TAAAGTTGTAAGTCCCTTGATTGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.23%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [4-4] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.5   Confidence: HIGH] 

# Array family : NA
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