Array 1 18599-19421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBB01000022.1 Hydrogenibacillus schlegelii strain MA 48 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18599 30 100.0 31 .............................. GGAGATCAGCCGGGACAGACATCTCCCGGCG 18660 30 96.7 31 ............................T. CTGCGCTCCAGTTCCGCCTCGACGAAACCGC 18721 30 93.3 31 ............................TG TAAAGCAGCGTTGGAGCCAACCGCCGACGGA 18782 30 96.7 31 ............................G. GCCTTGTTCAGCACGTAGATCAGCTTGTCGC 18843 30 96.7 31 ............................T. CGTCGGGGGTGATGCCGAGCCGCTGGAAGAG 18904 30 100.0 31 .............................. TTAGCCTCACTAACTTCTCCACTTACAACGA 18965 30 96.7 31 ............................T. TGTTCGGAGTCAAAGCGGCTGTGTCGCTAAG 19026 30 93.3 31 ............................GG AATCGCCGCCGGAGGGAGTGCCTTCTGAAGA 19087 30 96.7 31 .............................C CGCTTAATCCGGCCAATTCGGATCAGCGGGA 19148 30 100.0 31 .............................. GGCGAGCTGCTGCTATACGGCGAGATCGCTG 19209 30 96.7 31 .............................C CGCTTAATCCGGCCAATTCGGATCAGCGGGA 19270 30 96.7 31 .............................C GGATCACTGGGCGGTACGTCGACATCTTGGA 19331 30 93.3 31 ............................TG GTTGAAAAAGACGATAGTGGAAGCAGTTGGA 19392 30 93.3 0 ..............T.............G. | ========== ====== ====== ====== ============================== =============================== ================== 14 30 96.4 31 GTTTCCCCCGCGCACGCGGGGATGGACCCT # Left flank : TTGATTCCCAGTATGATCGATCAGATTAAGGAGCTCATCCATGTCGGCGACGATTCTCGTGACGCGTAACGTCTCGGACCGGATTCGAGGGTTTCTGGCATCCTCCATGCTTGAGCTTGCCCCTGGCGTGTATGCCGCCGTTCGTTTTTCACCGGCTGTTCGCGAGCGGGTATGGGAAGTTCTCGAAGAATGGTTTGTAAGAGAGGTCGAGGCGAGTATCGTGATGGTATGGCGCGATCCCGCTCAGCCGGGCGAAATGGCCGTCAGGGTCCTCGGGCTTCCACCGATCGATGTTGTCCAACAAGATGGCATGCTGCTTGCCAGACGCCCCGGAATGTGGGAAGATGAAATAGGGAAGGAAAAGGGCTAAACAAGTCTTTTTGCTCAAGGCCTTTCTAACTCAAGGCCCCTGCGGACAGTAACCGCTGGGTTTGTGTTAAGAGTATATGTTCGTGGTTTCAAAAGTCCTATCTTAATCACAAGAAATAGGTATGTCAAGA # Right flank : TCCTGACCATAGCCCTGCAGTGGCTGTTCGACAACCCGATGAAGGCTATGTTGCTGGACCCTGAGAACATGGCCCTGGCGCTGGGACTTGTGAAAGGAGTTGGGTCGCGGTGAGCGTGACGTGGCGCCTGATCAAGTCCGGCCGCGAGGTCGGCCGCATCGAGCTGGGCGACGACGGCCAGGTCCGGGCCCGCTGGCCGGACGACATGCCGCGCGACAGGCAGCGGTTCATCGAGGAAGGCCGCGAGGCGGTCTGGAACCTGGGCTACTCGGATCACCCTCGGCCCGAGATGTCCGCCTGGCCGATCTACTGGCATGAGGTCTTGACCCTGCTGACGTCTTCCGGCTGGTGGGATCAGGTCGAAACGGACTACAAGCCGCCGGACTTCCCGATCTACGACGAGCAAGATAATCCGATCTACTACTGACGAGGCGTGCCGAGGCGGTTTCCCCCGCGCATGCGGGGATGCACCGTGGATACCCCACGGGGCGCAGCCGATC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19867-20136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBB01000022.1 Hydrogenibacillus schlegelii strain MA 48 contig_29, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 19867 26 100.0 35 .......................... GTGGATACCCCACGGGGCGCAGCCGATCCCGGCGT 19928 26 100.0 35 .......................... GTGGATACCCCACGGGGCGCAGCCGATCCCGGCGT 19989 26 100.0 35 .......................... TTAACAGTACTGGCATGGACGACGGCTGCCATGGT 20050 26 100.0 35 .......................... GCACGCCATTCTCGGCTTCTCGCACCTGCCTGAGT 20111 26 92.3 0 .........T............G... | ========== ====== ====== ====== ========================== =================================== ================== 5 26 98.5 35 TTCCCCCGCGCATGCGGGGATGCACC # Left flank : AAAGACGATAGTGGAAGCAGTTGGAGTTTCCCCCGCGCATGCGGGGATGGACCGTCCTGACCATAGCCCTGCAGTGGCTGTTCGACAACCCGATGAAGGCTATGTTGCTGGACCCTGAGAACATGGCCCTGGCGCTGGGACTTGTGAAAGGAGTTGGGTCGCGGTGAGCGTGACGTGGCGCCTGATCAAGTCCGGCCGCGAGGTCGGCCGCATCGAGCTGGGCGACGACGGCCAGGTCCGGGCCCGCTGGCCGGACGACATGCCGCGCGACAGGCAGCGGTTCATCGAGGAAGGCCGCGAGGCGGTCTGGAACCTGGGCTACTCGGATCACCCTCGGCCCGAGATGTCCGCCTGGCCGATCTACTGGCATGAGGTCTTGACCCTGCTGACGTCTTCCGGCTGGTGGGATCAGGTCGAAACGGACTACAAGCCGCCGGACTTCCCGATCTACGACGAGCAAGATAATCCGATCTACTACTGACGAGGCGTGCCGAGGCGGT # Right flank : CCGAAAAGGCAAGGCTGGTGACCACCTATGTCGATGAATGAAATTGGCGAGCTTGATGTCGTGAGGTTAAAAGATGGGCGGGAGGGAACGGTTGTTGAAGTGTACAATGTTCCCAACTGCCCGCTGGCATATGAGGTTGAATTTGACGATGGCAGATTGGAGACTGTACAGCTCTCACAGATTGACAAAGTGATTTGGAAAAGACGAAGCCTGTGAGATGGAACAACGATAGAAATTAACAAGAAGTTCTAACGCACGGAGGCGTGACGCAGTACTGTGACACCTGCTTCATCTTCAGGTTCAAAGAGAGATTTGGGATTAGCTTCGTGTCGCTAGCAAAGGAGGTTTTTTTACCGTTGATAGACAAAGATCGAAATGAGAGTTTACCGGATAAAATTGTCGCTCGGATCAACTTAAATATGATTCCTCAATTCATCCCACGCATTGAAGGCGAACCTTTGCCCAATCAGTTCCTTGCGCTTATTCTTGACATTGAAACG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCCCCGCGCATGCGGGGATGCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 67913-70224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBB01000004.1 Hydrogenibacillus schlegelii strain MA 48 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 67913 31 100.0 35 ............................... TGGTGCTTTTCTCCCTTCTGAGTCGATGTCGATGA 67979 31 100.0 36 ............................... GGTCGTTCGTGAGCCAGAGATGCGTTAGCCACGTTG 68046 31 100.0 35 ............................... ACGTTTTGCGGCGAAATATAGAAGGCTGGCTATCA 68112 31 100.0 35 ............................... GACGGCGCGGATGCGGGAACGTATCCCGGTCGCTG 68178 31 100.0 35 ............................... TGGGGGGGGCCCGACGCCGCCGGCGCCGGCGGCTG 68244 31 100.0 36 ............................... CCTTCCGCAGTTGGGACAAAATAGTTCCCAACAGTA 68311 31 100.0 34 ............................... TGTTTCTGCTGCCCTTTCCCTCAATTCGGCTGAA 68376 31 100.0 35 ............................... GGCAACGCACGTTATACCCGGCGCGGCCTCATAGA 68442 31 100.0 36 ............................... GGAGCTGCCATCTTCCAGATCGACGTTGGACGGATT 68509 31 100.0 35 ............................... GGCTTGCGGAAAATCAAGATGTAGTCTGCAAGGGC 68575 31 100.0 37 ............................... CTTCAACGGCGGTTCGGTATACGACACGCAAATTTTC 68643 31 100.0 35 ............................... GTGCGTCTAGGGCAGCGCCTAGGGCGTCTGTGAGC 68709 31 100.0 36 ............................... GAGTTACTACTGAAGCAAAATGCCCTGTTTGTGGCG 68776 31 100.0 36 ............................... TCAACGAGGACGAAGCGGTACCCTTCCGGCCGGGCA 68843 31 100.0 37 ............................... CGGCAAATCGCTCTGGCGTGATCGCGATCCCTGGGTG 68911 31 100.0 37 ............................... TCTGATTGCGAGGTCCTCAAAGTAGACGGGAGCTATG 68979 31 100.0 36 ............................... GGTGGAGTACGGCATCAACACGCTTATTTCGCCGTC 69046 31 100.0 37 ............................... CATTTTCGCTGCCGCGTCTATGCTTACGGCGACGGCA 69114 31 100.0 36 ............................... GGCCCGGCAATCTGGCTCCGTACGTGTTATGTACGA 69181 31 100.0 35 ............................... CTCTTATGTGTACATGGGCAAATATTACTTTTTGG 69247 31 96.8 39 ..............A................ ACGTTGTACGCCGTGCTGTCGTACGACTCGGAGTCTCGA 69317 31 100.0 37 ............................... ATCTCCCCGCATAATCATCCCAATCATGGATAAGCAA 69385 31 100.0 35 ............................... CCGTATCGTCTGGACACGGCCGCCGAAGCGGCGCA 69451 31 100.0 37 ............................... TTTTCACTTCTGGGCAATTCTTCTTTGCCCAGCGGTG 69519 31 96.8 36 .....A......................... TACGAACTCGATCTCCTCGTCCAATATTTTTTGTGC 69586 31 100.0 36 ............................... ACGATCCTCCAGAACAGCGCGGTCAGTTCTTTCCTG 69653 31 100.0 36 ............................... TTCATTGCTAAGACCAACTTTCCTACCTTGAACGGG 69720 31 100.0 37 ............................... TCGTAGACGGCGGCGAGGCGCTGATCCACCGGCTATC 69788 31 96.8 36 ..............................A GTGGTGAGGGGATGTACTGCCCTCACTGCGGTGCGT 69855 31 100.0 37 ............................... TCGTAGACGGCGGCGAGGCGCTGATCCACCGGCTATC 69923 31 96.8 36 ..............................A GTGGTGAGGGGATGTACTGCCCTCACTGCGGTGCGT 69990 31 100.0 36 ............................... GCGTAAGTGAGCTTAGGGATCAGCTGATGCAATCGT 70057 31 96.8 36 .........T..................... ACGAAGAGCTCATCGGCGTCCGTCCAGGCGTGGCAC 70124 31 100.0 37 ............................... TTGATCTCCTTCGCGAGAAAGCGGTCCTCATATGTCA 70192 31 83.9 0 ..........C......AA.......A..G. | AA [70207] ========== ====== ====== ====== =============================== ======================================= ================== 35 31 99.1 36 GTTTTGAGCCTACCTTATGAGGGATTGAAAC # Left flank : TCACGTTTTACGATGCGCTGCCCATACCGGAGTCTGTTCAGATCCATTCGGATGTTATGAACGTCCACCATTCGGAATACTATCGCGACGGCAAAACTCCGCCCGCCGATTGGGATAGCCCTACGCCAATTCCGTTCATATCGGTGACGGGTCGATTCTTGATCGCGCTGGAAGGACAACCCAAATGGGTCAGAACGGCCTTCCAGATCTTGCGGCTGGCGTTTTGTTATGTCGGAGTCGGTGCGAAGTCATCGAGCGGTTACGGTCGACTTCGTCTGATCCTTGAGAAAGACGATGCTTAAGGATGACAGACATTCAAGCAATTATTGAGCTCATGTCGTCGATCTACGATCGTGCCAAAACCCCCGGGGATCGACGACAACTTGCTGTCTTTTGTATCCTGTGCTATACTTAGCCTAGCGCATTTTTCCAAAGCCTGCGATTGAGGGTCATTAATTCGGTAAAAGGGAAAAGCAAATTGATTATGCGGTGCTTAGTTA # Right flank : CTATAAACAAAAATCAAAGTGGAGGGCAAGAAATGATTAATTCTCGGGAATTTATTAATAAAATTTTGCGTTACTGGCTTACTCTGGAAGCGTTGACGCCTCAAACAGCCGACAAAGCTCATCCCGATGACAAATTAGAACCGAGTTATGAAATTAATAAAGAAAAAGGCGCAATGCCTTGGATGGAAGGCCATGAACATCGTCGAAAACAACCGCGCGATCAACATCAATGGCATTACATCGTACAAGCCGGCTTGTATGATATTAGAATATTTTATGAAAAGATTTTATATGAAATTAAAAGCTTAATAGCGGATAATGAACGTGAAGACGACGAGTACGATCGAGCCAGCGGCACCGGCCGGCTGTATGACGTTGAGGTAGACGCCGAAGGACGTCCGATTGCGGAAACGTTCGCATTATCGATGGCCGGCTGGGCTGCCGGCGTCATTCTTCATCAAGGAGTCGGCGCGTTGCAACAGGGAACATGGTGCAACCTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 48898-58834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXBB01000006.1 Hydrogenibacillus schlegelii strain MA 48 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================== ================== 48898 30 100.0 36 .............................. GCGGAAGCTTTCGCAGTTCCGCCGCGATGGCCTCAG 48964 30 100.0 35 .............................. TCGCCGACGCACTCCTTTCCTCCGCAAAAGACCCG 49029 30 100.0 36 .............................. GCGCAGGTGGTCGGCTACTTTGATGGCAATCGCTAG 49095 30 100.0 36 .............................. GTGATTGGCAGGATCCCAAGACTGACTGGAAAGCTG 49161 30 100.0 38 .............................. GTTGATAGAGACGACAGAGAACCATATCCACGATACCA 49229 30 100.0 35 .............................. CCTGCATCGCCGTCGCCGAGGCCGCCACCGCCTGC 49294 30 100.0 37 .............................. TTTAGGCGCTGTCGTCGCGGTTGGCGCTTGTGCTGGG 49361 30 100.0 37 .............................. TAATGCCCACGATTTCCTTGTTGCTCGGGCTTTGCTG 49428 30 100.0 36 .............................. TCTGCTCGGTCCTCGGGTCAGTATAGTTGATGCCTC 49494 30 100.0 36 .............................. AGTTAAACGACAGGGCCGGAATCTGGGATGACAAAC 49560 30 100.0 36 .............................. GACGTCTACGTCCGCGAAGCGGATTCGCTTCGACAT 49626 30 100.0 37 .............................. AAAAACTGCAATTAAACTGAAACGCGGTAGGATGTCA 49693 30 100.0 37 .............................. TTCGCTGATGAAGTCTTTTAGGAATATGCGATCAGGG 49760 30 100.0 37 .............................. ATCGTAGGCCTTGGCTGGTTGTACTCACATTGGATCG 49827 30 100.0 34 .............................. GCAAGAGAAGGACCTGTACCCAACCGCGCGCCTC 49891 30 100.0 36 .............................. CTCATCATGCGACATCCCTTTAGTCCGCGCTAAGAT 49957 30 100.0 37 .............................. AGGCGGTGTGGGTGCCGCCGCTAGCAAATGAGAGAAG 50024 30 100.0 37 .............................. GCAGCTTCCAGCAGATCTTCATAGGACACTCTGCCAT 50091 30 100.0 37 .............................. GTGGTCCGGCTTTAGCACCCAGTCGAAGTCTGCGCGC 50158 30 100.0 36 .............................. CAGGCAACAAAGGCGTCGGGTGCGCCCTGCAGGCGG 50224 30 100.0 36 .............................. AAATCTACGCGCCGCTAAACAGTACATCGACCTCGG 50290 30 100.0 36 .............................. GTATAAAGTAATTAATATAACCCAAATATTGACCGG 50356 30 100.0 36 .............................. GCGTTTGGTTTTTTGTTTCCACTAGCGCCGGCGCTT 50422 30 100.0 38 .............................. ATCTCTACTATTAAAAAACACGCCCGCTTCATCGACAA 50490 30 100.0 37 .............................. CTCGGCTCGGTCATCTCGGATCTCTGAGTAGGATCGG 50557 30 100.0 36 .............................. GTGGAGGACGGCGAATCCGCGAATTGTGGAATTCTG 50623 30 100.0 35 .............................. AGCGGGCGCTCGCGATGAACACATGGCGGCTTATC 50688 30 100.0 37 .............................. GAATGGAGCGGCCACTCAGATGAGGCGGCGCTTTCTC 50755 30 100.0 37 .............................. CCGGTGTTCCGGTGCGTGTCGTTTCCGATCGCTTGGG 50822 30 100.0 38 .............................. GCTGTATTCGTTACCCCAACAACGTCTGGGTTCCCGAG 50890 30 100.0 37 .............................. TGGTTTGTCGCCAAGGATGTGTGCGAGATATTGGAAA 50957 30 100.0 36 .............................. GCGCAGCATCAGAACGATCAGAAACGCAACAATTGC 51023 30 100.0 37 .............................. TCCCCTCAATCTTCATCACATTTCCTCCCATCATATG 51090 30 100.0 37 .............................. TCGGACGAGTCGGTTGCTGAGGTTATTTGCAAAAAGG 51157 30 100.0 35 .............................. TGGTTTTTTTCGATGCCATGGCGAGCATTTCGTAA 51222 30 100.0 37 .............................. TCGACGCTTAAGATGCAACCCGCTCCGATCGCGCCGG 51289 30 100.0 36 .............................. GGGCGTTTAGTGGAGCGGATTTCCACGACGCCGTAT 51355 30 100.0 36 .............................. AGCGAACCGCGCGCTGGATCACCGCCGCGGTTTGTA 51421 30 100.0 36 .............................. CGGGAACGCGATCGTTGCGGTTGAGACTGACGGCGC 51487 30 100.0 37 .............................. TCGGCGGTGCCGACCATACGCGAATCAACATCAAAAA 51554 30 100.0 38 .............................. ACGGTCGTCGCTGACGAAATCGTCGAGACGCTGCAAAG 51622 30 100.0 37 .............................. TCCAGCATTGACGTGCAAAGGAGAAGGGTCGTGATCG 51689 30 100.0 36 .............................. CTCCGAGTTTCTTGCCTTCCTCCCATTCGACGATTC 51755 30 100.0 37 .............................. TTTGGATTGGCGACGATGCGATTTAGCTTGTCCAGGA 51822 30 100.0 38 .............................. CAGGTGTTGAGAACCCGCGATCCGTCGCCCAGCTTAAA 51890 30 100.0 36 .............................. GAATTCTCGTAAGCCTTGTCTTCATTGGCTTTTTCG 51956 30 100.0 36 .............................. CCATATTGCGCATGCGCGCTAGTGGGTATAAACTAA 52022 30 100.0 37 .............................. TGTACTCTTTGTCGACTTTTGCTCTTTCTATATTTTC 52089 30 100.0 38 .............................. TCATCTCCGCGTAGGCGCCCTCGATCGCCCTGACGATC 52157 30 100.0 34 .............................. ATGAAGCGATGCGATCGATCAGGGCAGTTTTTGA 52221 30 100.0 35 .............................. ATCGAACATTACAGAATCGTTCAGTTTGACTATCC 52286 30 100.0 37 .............................. TTGACGACTGAGGTTGCAAAACATAATCTCCACCAAC 52353 30 100.0 38 .............................. TCAGGAAGATTCCCCCTAGCTTCACGCCACGGTTTTTC 52421 30 100.0 37 .............................. CTGCGTGACGAAACGCGATGGCCTGTCCATCAAAATA 52488 30 100.0 36 .............................. GCACCTCGGCCAGGTCGTCGGCCGGCGTTTCGCCCA 52554 30 100.0 36 .............................. GACGAACGAAGTGGCGGATTCCTGCACACATGGGCA 52620 30 100.0 37 .............................. CCGTTGTGCTAAACTTACAACGGACCACTAGGTTCCG 52687 30 100.0 39 .............................. GGGGGTGTTTCCCTGGGTTGCGGCAGTCGGGGTTGCCGC 52756 30 100.0 37 .............................. AAGCGCTTATGTATCGAAGACGGATTATTCGTGAGGC 52823 30 100.0 36 .............................. TCACCTTACCGCGCCGCGGCGATTCGGGACGCGGAG 52889 30 100.0 36 .............................. GTGGGAACCTATTAGAAATCTGGGTGTTGTTATCAC 52955 30 100.0 37 .............................. AGTCAGTCTAAGAACCCAGCGGACGGCGTACCAGATG 53022 30 100.0 37 .............................. TTTTATCCCCTCCATGCTTCTTATTATACATCAAAAA 53089 30 100.0 36 .............................. ATCGCCGCCTTGAGAAGGCGATTGCACCTGTGCGAC 53155 30 100.0 36 .............................. GCTGTGTTTCTGCTAATAGGTCAGCACGAGGATAAG 53221 30 100.0 35 .............................. GAGAAAATCGGCGCATCTGCCGCAAGCCGCCCTGA 53286 30 100.0 37 .............................. TGCGGTACATCTCAATGAGCTGCTGTATGTGCTTTTC 53353 30 100.0 35 .............................. TCTGGCCGCGGTTCAAAAGTTCCTGAATCACCTTC 53418 30 100.0 35 .............................. ACGTCCTCATCGGCCTGGCGCGCCGGGTCGCCGCG 53483 30 100.0 36 .............................. CACGAATTACTGAAGGCGTTCGAAGAAGTAACGAAA 53549 30 100.0 36 .............................. CTGCGGCCAATGCTTGCGGATCGGAAAAATCATTCC 53615 30 100.0 36 .............................. GATTCCCGGAAAACCTTGATACACAAGGCTTTCCGG 53681 30 100.0 35 .............................. ACTTTGAATAGACAATTTTAAAATTATCTTTGGAA 53746 30 100.0 35 .............................. TTTGCTGTTTTTTAGGCGGACGCCCGCGCCGTTTA 53811 30 100.0 37 .............................. CTGTCGCTTGTGCCGTCGCGACCGCGACCGGCGCTTG 53878 30 100.0 37 .............................. TAGATAAGCGGTAGTCTTTCATCGTCTGCTTAAACAT 53945 30 100.0 36 .............................. TTCTGCCCGACCACAAAACTATCGTCCTTTGTGATA 54011 30 100.0 37 .............................. TTCGTAAAGTTAGGGAACGTTATGGTCGTGACTGGCA 54078 30 100.0 35 .............................. CTCGCAAACGATCGCCCCCTTTTCGGCGTCTGGTA 54143 30 100.0 37 .............................. GGCAAAGCTCCCGATACTCACAGCTTCGGCAGACCCG 54210 30 100.0 34 .............................. TTTGCAGAAGCTCCCGCAGCCGCATGACCTTATC 54274 30 100.0 36 .............................. CTCTTCGGCCGCGGCGGCCTTAGCCTGAGCCTCAGC 54340 30 100.0 39 .............................. TCCGCATGGCGAACCCCGCCGGCGGTCTTCCGTGGAACG 54409 30 100.0 36 .............................. GTGTTGTCTATGTCCAGAAGCTTCGCCACCTCCTCC 54475 30 100.0 37 .............................. TTGCAGGGGCGGTGTTTGTCCCCACATAAAAATACCC 54542 30 100.0 38 .............................. ACTTCCTTTAGTTCCCTCCTTTTAAGTTCTTTAAGATC 54610 30 100.0 36 .............................. GAGATAACGACTTCCGACCTTGGGCGCCCTTGACAG 54676 30 100.0 35 .............................. ACGATACAGCTCCTTAAATCCGTCAGCCCGCCGCT 54741 30 100.0 36 .............................. GCGCCGACCTTGGATGGCTGGGCGCATGGGTGCGGA 54807 30 100.0 37 .............................. ATTGGATAGCCTGTCCCTAACGTGGTCCGAATTGGAG 54874 30 100.0 36 .............................. AGTACATCAATCTCCGATGGTTCGGGCGCATCCTCG 54940 30 100.0 35 .............................. CAGTAACACAGGATCTAACAACTCCTTCGCCTTAT 55005 30 100.0 35 .............................. TTTCACGGGCGGAGGGCATTGCTGTGTCGGCCGGG 55070 30 100.0 39 .............................. CCCGACGGGCGGTTTCGATTTGCCGGGTGAGCTTTTCCA 55139 30 100.0 36 .............................. CAAATCTAAAAAGCTATCTACTGATTCGATCTTGCC 55205 30 100.0 37 .............................. ACCGCAAGCGCAAGCACAAGCGCCGAAACGGCGCAGT 55272 30 100.0 36 .............................. AATAGCTCTGGGACGCTTTTCTGTACCGGGAAATAC 55338 30 100.0 36 .............................. AGTGGTACTAAATATTATGTGCTAACGGAGGACGCC 55404 30 100.0 36 .............................. TTTATTCACCCCCGCTGTTTGGTCGCCCCGGCGGGA 55470 30 100.0 36 .............................. GAATAACGCTGTACGCCCCTTTGTCCTCAGCCCGCG 55536 30 100.0 36 .............................. CCCGTGGCAGGTGGTATTGACATGATCTTAAAAGGG 55602 30 100.0 37 .............................. TTACGAAGACGTAATCGATATTTTAATTTCTTCTAGC 55669 30 100.0 36 .............................. TCTTTGACCCGCACGATCGATAAGCTCGTCTCCCGA 55735 30 100.0 36 .............................. AAAGCGCGAGAGGAACGACAGCCGTTACACCAGACA 55801 30 100.0 36 .............................. AAGGAAGCAAAGAAAGGAATTCCTGATCGGTGGATT 55867 30 100.0 35 .............................. CACATATTTTCCCTCCCCTACCAACGGCGCAGGCG 55932 30 100.0 35 .............................. TCCATCATTTGATGATTAAACAGGCGCAGTCGACC 55997 30 100.0 36 .............................. TTGTCTAACCCCTCCGCATGATTTTGTGTGAACCGG 56063 30 100.0 36 .............................. AGATGCAGTTCTGAGAAAGGAGCGACGGAGATGCTT 56129 30 100.0 36 .............................. TTTTATCCCCTCCATATCTTTATTACATACCAAAAG 56195 30 100.0 37 .............................. ACGTGCTGGAGTCCATCCAGGCGTAGGCGGTAAGTAC 56262 30 100.0 37 .............................. CGATGAGTTTGAGTTCCGCTTCGCTTAAGGGTTTGCG 56329 30 100.0 36 .............................. CCGCCGCGGCTGGACCGTTCCGCGGCAGGGACGGCC 56395 30 100.0 35 .............................. ACTGTGCAGGTGACGACAGGGCCGATCCAACACGG 56460 30 100.0 35 .............................. ATATGGACAAGGAGCTCTTGACGGCAAAGCAACAA 56525 30 100.0 37 .............................. AACGAGCCGTTACGTCTTCGGCCGTAATGACAGCCGA 56592 30 100.0 35 .............................. ACGCTGAGGCGGCGTTTCGGACGCTCGCCGCGATC 56657 30 100.0 36 .............................. CTCCATCGCTTACGTCCGGGCCGCAGCCGACGCAGT 56723 30 100.0 35 .............................. ACAGTTCGATTGCGTTTTTCAGGGCAGCCGGGACA 56788 30 100.0 36 .............................. GTGACGATCAGTTCGAGGCCGTCGGCGCGTAAGACG 56854 30 100.0 35 .............................. TCGTCGGGACCGGCCGGCGGCGCGAGCTGACCGGG 56919 30 100.0 36 .............................. TTCTTGCCGATCTCGGCATGGCCACAATCGAGCAAC 56985 30 100.0 37 .............................. GTCGCGGCGATCGGCCCTTATTGCGAGCGCGTCCGCT 57052 30 100.0 36 .............................. AATCCCAACGGCCACAAGATAGGCGCCAAGAATCGA 57118 30 100.0 37 .............................. CGTTCTTGCGGATTTACGATAAGGCGCTTGAGCAGGG 57185 30 100.0 36 .............................. GAAATGCGATCAAATAGCGATACAACGTACAACCCC 57251 30 100.0 35 .............................. AGCGCAAAACCGCTAACAACGCCAACAATGACTCC 57316 30 100.0 36 .............................. TCCGAATCGAGGCCGACTTCTGGCGCCTGGTCGAAA 57382 30 100.0 37 .............................. CGGAACGTTCAACCAGGCCACCCTGCCGGTTCCTACG 57449 30 100.0 36 .............................. GGATCACCCGGACATGCGAGACGTGTTGTTTCTGGA 57515 30 100.0 37 .............................. TGATCCGACGCAAGATCATGGCCGCGAAACTCGATCA 57582 30 100.0 36 .............................. TGTACACATAAGAGCACTTATGCGCACATGGGCAGT 57648 30 100.0 35 .............................. TGGTGGCGGATTGATGGGTTGGGTGTTCCAGGACC 57713 30 100.0 36 .............................. CGGCCGTCGTTCCTCTCGCGCTTCTTGTCGGCGGCG 57779 30 100.0 37 .............................. TGGCAATCAAGACAGTCCTCAGGGAACTGCTCGGGCG 57846 30 100.0 35 .............................. AGGATGAGGAAAATCGTAAAGTCGAGCAGAATAAA 57911 30 100.0 34 .............................. GTCCAAATACCATCAAAAAGATATATCCTATTCC 57975 30 100.0 37 .............................. AGCGCCACCAGAACGGTCCCCGCCGCATGTAAAACCT 58042 30 100.0 36 .............................. GATCGAAAATCTAAGCATCTTAATTTTGCAGTCTAA 58108 30 100.0 36 .............................. CGATGCCCACCTCGCAAACGATTCAATGCTTTAGAA 58174 30 100.0 36 .............................. AGAATTGGTAAATAAGGGGGTCGAGATACTATGCGC 58240 30 100.0 34 .............................. ATGGGAGCGCGGTTGGGTCGTGACGCGCTGGCGC 58304 30 100.0 35 .............................. GGTCGTCATACACCAAGCACCACCTTCGTGGCGTA 58369 30 100.0 37 .............................. CGAGACTTGCTCAAGTATTTAGCGAGATAAAGGCCGA 58436 30 96.7 35 ................C............. GCACGGCAAAGGCGTCGACACCGGTTTCCGCCGGC 58501 30 100.0 40 .............................. TTGCGGCGATGGCTTTTTCCGGCGGGTTAACTTCTCCGAC 58571 30 100.0 37 .............................. TCAACGCTGTTCACCTGTTCACGCGAGTCCTGAAACC 58638 30 100.0 36 .............................. GTTTTCGCCCGCCTTGAGGCCCGCGTCGATCAGCAC 58704 30 96.7 69 .............................T CCAGCATGTTCCCATTTGTCTCGATGTTGACGTCCTATGCTCAAGAGTTCGTTCGCCAGGTAAAAAAGC 58803 30 86.7 0 .........T..........T....T...A | A,T [58823,58827] ========== ====== ====== ====== ============================== ===================================================================== ================== 150 30 99.9 36 GTTTGCAGCCTACCTATGAGGGATTGAAAC # Left flank : GTCGGTCGATGTCATTCCGCTTCGTTTCGTCGATGAGGCGCTTCGGTTGATCGAGCAAGGAGACCGGTGGAGGATGGTCGAATTTCAGGTACCGGTGCGGATTCAGTGGTTGCACGCGTATCGCGAAGCGTTTGAACATTATGCCAGTCTCGATACGCTTGTAACGCAGCTTCCCTATGACGATGAACTTGGCCTCTTGAGCCGTTCGCTGGCCGATGAGTGGGGGATCGGCGCTTCTTCCGGTCCGTTGATCCTCTCGTAGGAATGATGTTTGACAGTTTTTGCTTTGTTGCTTTGATTCTTTTGTATGGGCTTTGACGTGGAAGGAATACTGTCGTCGATCCCCAATCGAGCGAAAATCCCGGGGGATCGACGACATCTTGATATTTGGCGAAAATCCTGTTATGATGATGCCAGAGCGGCGAATGTTCCAGGGTAGCGCAGCGGATCTTTTTTGCGGTAAAGGATTAGCGTGCTTTATGATTAACGTTATTTTTGGG # Right flank : ATCTGAATATATTTCAATTTTAGTTTTAGCAAGCGCGGTTATAATAACGACATGAGTTTGTGCTTTAAGAAAATATAAAGCATAAAATGCGTGACCGTATTGACAAATTTAGATCGTTGTCGGCAGGATTTTTCTTGCTTGCGAAGAACTACTATGATCAGACGGATATCTTCAATCAGACGGATATCTGCATCGAACTCAATCCAGCTTTATCTTCAGCTTCATCTTTTGGAGGTGTTTATGACAGGCGGAAATTAGAGCTACACGTTGAGTTCGATTGCCGATGAAAGGATGCTGAAGATGCAATTGAAGTTGACGTTAACGGCACCGGAGCCGATTCAACTGCCTTTTGAACATAACCATATCCTTCAAGCCATCATCTATCGTTGGATCGATCATCCCGGTTTGCGAGCCTATTTGCATGATCATGGATTCATTTTCGAAAAGCGGCCGTTTAAGCTGTTTGTTTTTTCCAGATTGATGGGAAAGATATCCGTCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //