Array 1 997844-1000902 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAALJB010000001.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-CM43 chromosome, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
997844 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA
997905 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC
997966 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC
998027 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA
998088 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT
998149 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT
998210 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC
998271 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA
998332 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA
998393 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA
998454 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC
998515 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG
998576 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT
998637 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG
998698 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC
998759 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG
998820 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC
998881 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC
998942 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC
999003 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC
999064 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG
999125 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC
999186 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [999206] Deletion [999226]
999228 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT
999289 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT
999350 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA
999411 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC
999472 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC
999533 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC
999594 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA
999655 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA
999716 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA
999777 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT
999838 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT
999899 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA
999960 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA
1000021 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT
1000082 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA
1000143 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT
1000204 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT
1000265 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT
1000326 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC
1000387 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT
1000448 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT
1000509 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG
1000570 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT
1000631 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT
1000692 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC
1000753 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC
1000814 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC
1000875 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================ ==================
51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.17
# Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 1017448-1019857 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAALJB010000001.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-CM43 chromosome, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
1017448 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT
1017509 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT
1017570 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT
1017631 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA
1017692 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT
1017753 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC
1017814 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT
1017875 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT
1017936 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC
1017997 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT
1018058 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC
1018119 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC
1018180 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT
1018241 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT
1018302 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG
1018363 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT
1018424 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC
1018485 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA
1018546 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC
1018607 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC
1018668 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG
1018729 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC
1018790 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC
1018851 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC
1018912 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA
1018973 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT
1019035 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA
1019096 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT
1019157 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC
1019218 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA
1019279 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT
1019340 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT
1019401 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC
1019462 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG
1019523 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC
1019584 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC
1019645 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC
1019706 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT
1019767 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG
1019828 29 100.0 0 ............................. | A [1019855]
========== ====== ====== ====== ============================= ================================= ==================
40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA
# Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//