Array 1 35663-33301 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXP01000007.1 Klebsiella pneumoniae strain KCJ3K84 NODE_7_length_124936_cov_7.370807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 35662 29 100.0 32 ............................. ACAGAAACCAGCAGCGCTATAACCTTGAGGGG 35601 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 35540 29 100.0 32 ............................. ACCCAGCAGCGTCTGCAGGACTTCGCGGGGAT 35479 29 100.0 32 ............................. CTCATAGGTATAGGCTGAGTTAACTGAACCGG 35418 29 100.0 32 ............................. GCTCGCAAGTTACATCGCTGCTGTGAGTGTCA 35357 29 100.0 32 ............................. GTTTCGCACTCGCCGTTCTGACTGCTGCGCCA 35296 29 100.0 32 ............................. GATCTCGATGAGGAGATTCAGATTCAGTGTAT 35235 29 100.0 32 ............................. TCATAGCCGCCGCCCATGCAACGCGCTATCAG 35174 29 100.0 32 ............................. CTGGCGATCATTAACGAGCCGCTGGGTAAAGA 35113 29 100.0 32 ............................. CCGCTAAAAGTACCTGTTGTCCCACCAATACC 35052 29 100.0 32 ............................. CCCGCGGGGATCTGATGATCCTGGGCGGAAAC 34991 29 100.0 32 ............................. GTGTGAGAGCAACCACAGCAATGACGAAGAGT 34930 29 100.0 50 ............................. CTGAACGGGGATAAACCGTATCGCATCCGTGAACTGCCGGTGCTCCAGAA 34851 29 100.0 32 ............................. AGCGCCGCTGGTGATTCTGGCGAAGAGGACTT 34790 29 100.0 32 ............................. GGTTTAACCGACATTCTCTCGCCCGCAGTAAT 34729 29 100.0 32 ............................. AAACGATAAGGCGTCGGTTACGTGAGTTTTGA 34668 29 100.0 32 ............................. CGCCGATCGTGTTCAGTAGCAACGGGTATGCC 34607 29 96.6 32 ............................T TCGCTGTATTCACTCACCAGCTGGCTGCGCGG 34546 29 100.0 32 ............................. GATCTCGATGAGGAGATTCAGATTCAGTGTAT 34485 29 100.0 32 ............................. GCTCAAATCACAGACGAACGTTTGGCAAAAAT 34424 29 100.0 32 ............................. CCTACAGTCACAGCAGGCGGCCAGCATGTGGG 34363 29 100.0 32 ............................. CCATCAATTTCCGACGTTTTATAACGTCCCTG 34302 29 100.0 32 ............................. ACCAGATAGAGATCCACATTGAGATTAACCCG 34241 29 96.6 32 ............................A CGCGGAACCGTAATTCATGCATAAAATTTTTC 34180 29 100.0 32 ............................. GGAATGGGAGACTGGCGTTTCATGATTAGTGA 34119 29 100.0 32 ............................. CGCCCACGCTTTCTGGTCCATCACAGCGATAT 34058 29 100.0 32 ............................. TTGCGCTCGGCGGCGCTGTTTCAACCGCCAGA 33997 29 100.0 32 ............................. GCGGCGGGTTTATGGGGAAAGACTGGGACAGT 33936 29 100.0 32 ............................. AACTCTGGCCCCTGGCGCGGCGCCAGGATATC 33875 29 100.0 32 ............................. CAGCCAGCCATCTGCCGTTGAGTCGATGCTGG 33814 29 100.0 32 ............................. GGCAGTCCAGTTATGGTTCGGGTCCGCTGTGG 33753 29 100.0 32 ............................. GGGCTCAAGGCCGTTATTTTCTACGTGTTGAA 33692 29 100.0 32 ............................. GATGCCAAAAAACTGTTTGCGTTTGCGTGGGC 33631 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 33570 29 100.0 32 ............................. CCCCCCACTCGGTACGCATCATGATATTGAGC 33509 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 33448 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 33387 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 33329 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================================== ================== 39 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCTGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1452-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWXP01000141.1 Klebsiella pneumoniae strain KCJ3K84 NODE_141_length_4704_cov_10.460564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1451 29 100.0 32 ............................. GCTATAGAACTGAGCTACACCACGGGCCGCAC 1390 29 100.0 32 ............................. GGAATGTCCTTGATTATATAAAGGCTGTCAGT 1329 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 1268 29 100.0 32 ............................. TGGTGCTCTCAACCGTTACCCGCTGGCTGGAA 1207 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 1146 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1085 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1024 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 963 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 902 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 841 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 780 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 719 28 93.1 32 ..........-..C............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 659 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 598 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 537 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 476 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 95.3 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAAAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAGGGTCCCCGAGTCATGCGTTGTATACCGTGAGGTATGGGGCGAAGCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //