Array 1 21078-20382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJZ01000031.1 Thalassospira sp. MCCC 1A01428 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21077 36 100.0 30 .................................... AATTGAATCAAGAGAAAGAATAAGACCATT 21011 36 100.0 30 .................................... GTCCTCAGGTTGATGCCGAGTAATCTGGCC 20945 36 100.0 29 .................................... GCGTATAGCCGGATAATACCCGATGCCGC 20880 36 100.0 30 .................................... CCACGGCGGCGGCGGGGGTTTCAGCGGGGT 20814 36 100.0 30 .................................... GCATACCGGCGGCCTGTTGCGCAAGGTTCT 20748 36 100.0 30 .................................... TTGTGTGCTGGATTTTAAATTGGAGATACA 20682 36 100.0 31 .................................... CTGAACCTGTACGGTTGATGTTGGACGAACT 20615 36 100.0 30 .................................... CCCGTTGCTGTTATCTGGTCTGGCCGGTTT 20549 36 100.0 30 .................................... CCTGCCACGTGAACGCCTCGGCCCCTTTTC 20483 36 100.0 30 .................................... ACACCGAAGATATTGAGGTGATTAATTCCG 20417 36 75.0 0 .......................G...C.AGGGGTT | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 97.7 30 ATTGTAGCAGGTTCGATTTTGGATGGTAGCTACAAC # Left flank : GTGTGATGGGCGTTGGCATGTCGCACCGTGTGGGAAGTGTGGCATTGGTGCCGTTCATAACCGACCTTTTGGACCGCGAAGGGATGTTTATTCGCAACGGGTCTTGTGCGCTGATGATGGCCTATGCGGCATCGGGCCGGTTGATTGGTTATTTTGAACCGCATATCAACCCGTGGGATTGCATGGCAGGCATTGTTTTGATGCGCGAGGCCGGTGGCTGGTGCAACGCATTTTTGCAGGCACCGGACGTGCTGGAAAAGGGTGCGCCGATTTTGGTGGCGGGCCCGCATGTGGCGGCGGTCCTGTCGGAAATGACCGGGGTTAAATAACGGTTTTTGGCCCTGGTTGAGGGGCAAAGGCGGCATGAAAATTGCCTGCTTGTGCCTGTCAAAAACGCATCATTTTTGCGAAATTTCCGGTCAAAACGGCATTGGGATTTCAGTTTTTGAACCAAAAAAATCCCGCAACATATTGAAGATGTTGCGGGATTCGGTGTTCCT # Right flank : GTTTACTGGCTGCACCACAGGATGCGGGCGATCCAGTCGAGGTCCTGGGCGGTGATATAGCGGTCTTCGTAGTCCGGGTTGAGGGATTTAAGCTCGATCCCCATGGCGCCGCGGCGGACCAGTTCCTTGGCCATGACCTCGCCTTCGCGGGTTTTGACGACCACGCGGTCGCGCGGGCGGATGTTGGAGGCGGGGGAGACGATGATCAGGTCGCCATCGCGAAAAACCGGCGACATCGAATCGCCTGCGATGCGCAACCCATAGGCGGTGGGGTCGTGCAGGGCAGGGAAGGTGATGTCTTCCCACGCCCCGCCAACGGGGTAGCCTGCATCATCAAAAAAGCCGCGATTGCCTGCCTGGGCAAAGCCGATGACTGGCACGCGCCCGGCACCATTGCCATCCATCAATTCAGAAAATTCCCGGAATGTGACATTGGCGGCCGAGAGAACCTTGGCGATGCTTTCGGTGGAGGGCCAGCGGGGTTTGCCCGCATTTGTATT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCAGGTTCGATTTTGGATGGTAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 29428-28599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJZ01000011.1 Thalassospira sp. MCCC 1A01428 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 29427 36 100.0 30 .................................... ATCAGCAAGTTTGGTCGCGCCGCCTTTTAC 29361 36 100.0 31 .................................... GCTGGACCCGCAACCCATGGGTATGGGCCGT 29294 36 100.0 30 .................................... CCAAACAGCTTTTGCAGCAAGATATGATGC 29228 36 100.0 30 .................................... GAGTTTTATGAAAGTTTCGTTATTCTCGGT 29162 36 100.0 30 .................................... AACTCTTGGGTGGAATTGATATCTGCCGCA 29096 36 100.0 30 .................................... AATGGCGCGACCTTTGACGTCGTAATCATG 29030 36 100.0 30 .................................... TTAATCCAATCGACAAGGTTATCGGGTTTT 28964 36 100.0 30 .................................... CTTCGGTTTGTGCGTAGCGTGTCATGCCGC 28898 36 100.0 30 .................................... GAGAATATCTATAATGGCGTTAATCACACA 28832 36 100.0 30 .................................... CATACTTGCTTGGTCTGCCTACGGGGTTTT 28766 36 100.0 31 .................................... GAAACCGCGACAAGTGGCGGGGTGCTGCATT 28699 36 100.0 30 .................................... ATTGTTGATATCGATGATGCAGCTATCGCC 28633 35 88.9 0 .........................C...AA.-... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.1 30 ATTGTAGCAGGTTCGATTTTGGATGGTAGCTACAAC # Left flank : TCTTCCCCCCCAAATCAGAATTGAAAAGCAGATGGAGATGGAGGGGCTGTAACCCGGATCAGACCGATCAGACAGATCAACCGGGGAGCCAGGGCAAAATGGCATTATCGGGGTATCGGATCATGTGGGCTTTTGTGATGTTTGACCTGCCAGTGGTAACCAAGGCGGAAAAGCGCCGGGCGCGCAAATTTCATGATTATTTGCTCGATGAAGGTTTCGATATGAAACAGTTTTCGGTCTATTACCGCTTTTACGAAAGCCGGGCCAAGGCCGATGCCGCCAGCAAGCGCATCTCGGCCAAAATTCCCGAACGCGGCATGGTCTCGATCCTGTCGGTGACCGACAAACAGTTTGGCCAGATGGTCAATTTTATGGGCAAGGTGCCGACAAAAAACGATCAAAAACCGGACCAACTGGCTCTTTTTTGAGGTGAAAATGACGGTTTTTGACTCAAAAAAATCCCGCAACACTTTGAATATGCTGCGGGATTCGATGTTCCT # Right flank : GCCTGCTTAATCCCGTCAATAATGAACTGGATGGCGAGGGCGGCGAGGATCATGCCGAGCAGGCGCGAGATGACGGTGGCGACGGTGGGGCTGAGGCGTTTGGCGACCAGGCCTGACAACAGAAACATCACCAGTGCGCAGACCATCACCAGCCCGACAACGCCAATCACGCCGGTTTGCATGACGATATTGTCCTGATATTTGCCCATCAGGAGCATAACCGTGGCAATAGAACCAGGACCGGCCAGAAACGGGATCGACATGGGGAAGATCGACACGTCTTCGTGGTCGTCTTCATCATGGGGGGCGGTTTGTGCCGGTTTGGATGCCGGGGTTTGCCCGGGCGGGACGGTGGTACTGGTACTGGCAACGGTGCCTGTATGCGGGCTGGTTGCGGCTTGTGGCGGTTTGGCATCAGACGGGATTTTGCTGCCAGCAACGATTTCGTCATCTTCGTGTTCAAGTTCCTGATGAACCTGTTCGGCGCGTTCATTCCGTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCAGGTTCGATTTTGGATGGTAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 34753-35053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFJZ01000011.1 Thalassospira sp. MCCC 1A01428 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34753 36 100.0 30 .................................... TTCTATGTATTGGTTCGGGTGGACCGCGCC 34819 36 100.0 30 .................................... TTACCGCCACCAAGCTGCGAGAAGACCACT 34885 36 100.0 30 .................................... CGGGGAGTACGATATAAGGTCGTCTTATAT 34951 36 100.0 30 .................................... TCAGTTTGGTGGACATGCCAAGTCAATTCT 35017 36 72.2 0 ...T....C...........ACT.CCA...C...G. | A [35041] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 94.4 30 ATTGTAGCAGGTTCGATTTTGGATGGTAGCTACAAC # Left flank : CAGAAACCCGACCGGGCGCCCTGCATCATCAACCTCGACAATACAGGCCCCCAATGATGCCACCCCGACATCAACCCCCAATATGACGTTTCTGTTCATGCCGCCTCTCCGCTGATCCGCAACTATTAAGACATAACCCAACGGCACGAGCAACCAAAAGGCCCGCCCGATAAAACCTCACCGGACGGGCCAAAAATCAAAAAATCTGGGTCAGGAATGGCCGTAGCCAAACAATTGACAGACACCGGAGAAATACGCATACTGAAAACGGTTCGATTTTGGATGGTAGCTGCAACAAGCTATCATGCGAAAGATAAGGGGGGCTCCGGCCTCCCTTTTTTCGTTTCAGGCCATGCCTCCAAAACCTTTTCCCCGTCAAAATTCATTTTAAAAAATGACTCATTTTTAAAAAATCCGACCAAAATCAGCACCGGAATTCCATTTTTTGAACCAAAAAAATCCCGCAACATATTGATAGTGCTGCGGGATTCGGTATTCCT # Right flank : CAATCCCAAACAAAAAGGGAGAGCCAAAGCCCTCCCTTTCGCCGTCCCGTTTTACCGGGTGATCAGTCCCACCGCTTGGCCGCGCGCAGGATGGCTGCGGTGTCGATCTGGTAATGCTTATACAGATCGATGCTGTCGCCGCATTGACCAAACGCATTTATTCCCAGCGGGGCCACAGCATGGCCGCGCACCGCGCCAAGCCACGCCAGCGCCGCCGGGTGGCCGTCAATCACCGTGACCATGCGGGCATCTGATGCAAGTGGCTTCAGCAGGTTTTCAATGTGGGCCATGTCGTCACCTGCCTTGCCTTCCAGCCGGGCGCGTTCCAGGTCTTGCCATTCATTATATAAACGGTCCGTCGAGGTAACGGCCAACAGGCCAAGGCCCGGATGGTCATCTTTAAGCTGTTCCCACGCGGCAATTGCTTCGGGTGCCATTGCCCCGCAATAGGCCAGCACCATTTTGCAATTTTCACCCGGTTCGCGCAGCCAATAGCCCCC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCAGGTTCGATTTTGGATGGTAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //