Array 1 4583175-4587151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036255.1 Xanthomonas oryzae strain BB151-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4583175 31 100.0 35 ............................... CTTAAGATGCGTGTCAAGCGGGTGGGAAGCCCCGT 4583241 31 100.0 33 ............................... AACTTTTCGTCCTTGGCTAGCATCCAGGCAGAC 4583305 31 100.0 34 ............................... CTCAATTAGCTTGTGAATGTCTTCCAGGGCGTAT 4583370 31 100.0 36 ............................... GTGGATCAACGCAGCCAGGTAGCTTGGACTGCATGT 4583437 31 100.0 34 ............................... ACCATGAAGCACCCAAGAACGGGGCAGCAGATCA 4583502 31 100.0 36 ............................... TCCGCCAGCACCACGCAGCAGCTACAGACGCTTACC 4583569 31 100.0 33 ............................... GCCCAATCGGCCCAGATGGCCTGCCTGGTGTTG 4583633 31 100.0 33 ............................... GAGTTGACCGCAACGGTTAATTCACAGGGAGGC 4583697 31 100.0 34 ............................... AGCATGCTCATGTCCGGATAGGCCACACCCTCAC 4583762 31 100.0 36 ............................... ATGCTCATGTACCCAAGCAATGCGACTAGCTAGGTC 4583829 31 100.0 35 ............................... TTGCCAAGAGTACGGGTAATGGTGAGGGCACTGTC 4583895 31 100.0 34 ............................... AATGCACTGACCGGACATGCACTGTCCGAACGCG 4583960 31 100.0 33 ............................... TCTGGTTCCCCGGTCTCCTTATGAACAGCCAAC 4584024 31 100.0 35 ............................... ATCAGGTCCGCCACAAGGGTTCACGGGGACAAGTA 4584090 31 100.0 36 ............................... AACGCAGAAGAGGCCGTGGCCCTTGGCCTTGCTGAC 4584157 31 100.0 35 ............................... TCGCATGCTCGCATGCATCGCTCTACCGCGTTCCG 4584223 31 100.0 34 ............................... TGGATATGCATGCATGCATTCTCGCATGCTCGCA 4584288 31 100.0 34 ............................... TCACACCGCGCGAGACGTGTCAAGCGGTCGTTAC 4584353 31 100.0 35 ............................... TTGCAGGACATTTTTGGACTTGGCGGCGGCAGTGA 4584419 31 100.0 35 ............................... TGGGCATACAGCAGCTTACCTGTCTCATCTGTGCT 4584485 31 100.0 34 ............................... TGGTACAACCCCAGCGTCCCGCCAGATCCTGACC 4584550 31 100.0 35 ............................... ATTAGGGGTTACGTCCTCTATGCTGCGTTCGTCTA 4584616 31 100.0 35 ............................... GTATCGTCATACGGCGGGGCAATAATCACCACCCT 4584682 31 100.0 35 ............................... CAATACAGTCACAGGCACGTCGTACTATCTGTATG 4584748 31 100.0 33 ............................... TCGTTCACTGAACCATAGCGACGCGACGCTTGG 4584812 31 100.0 34 ............................... CTTTAGGAAGGGCTCTAATGGCTAATGAAACAAT 4584877 31 100.0 34 ............................... TGCTTAGCAAGCGCATCTTTGGCCTTAGCCTCTG 4584942 31 100.0 36 ............................... GCAAGCGCAGCCGACTCTCTTTCAGTCGCTGAAGCT 4585009 31 100.0 34 ............................... TAATACTGCCGTGCCTAATGCACGGTTCGACACA 4585074 31 100.0 35 ............................... TTGCCATCAGCCTTGAGAATGCCGGCATCCAGCCA 4585140 31 100.0 35 ............................... AGCGCACTCGAAGTGTATGTACAGGCGAACCTATC 4585206 31 100.0 35 ............................... ATGTCCATGAGGGCATGTCACGGTGACACTGCCAC 4585272 31 100.0 35 ............................... CGTGCTATTTGGCTATTTCCCCGCAGCTATGAACG 4585338 31 100.0 37 ............................... CTAGCCTGGTGCCTTGAGTATGTGGCATGGAAGCAGG 4585406 31 100.0 35 ............................... AGTGGGAGCATCCTGAGTGCCGCCAAGGTCAATGG 4585472 31 100.0 33 ............................... CTTGAGGCGGTAATCAGAGGTCTGAAACGCCAA 4585536 31 100.0 34 ............................... TTGTCGATGCGGTCGGGCCACTCCTCAATCGTGC 4585601 31 100.0 36 ............................... CCAATGGACCCTGACATATGGCACACCGCCCGCCCT 4585668 31 100.0 33 ............................... TCGTTTATTACCACGTCTTACCATGTAGAAGAT 4585732 31 100.0 33 ............................... TCTAGCTCCAGCTGAAGCAGTGCTGCTGCACGC 4585796 31 100.0 34 ............................... CTTGCCCAGGCTGAGAGCTATATCGCGGGCAACA 4585861 31 100.0 35 ............................... CAGGCATTTATCCTGCACTGTGCAGCAAATAACTA 4585927 31 100.0 36 ............................... TGGACGATGGAAGAAACCTGATGGAGAGTATGGGTG 4585994 31 100.0 35 ............................... TTTCACCGCGTCAAGAAGAACAGACAGGAGCTGGG 4586060 31 100.0 37 ............................... TGATGCCAATCCTTGTAGTCTGCCGGCATGACTGCCG 4586128 31 100.0 36 ............................... AAGGTGAAAGCCTGACGGTACCGCAGATCGCCCAAG 4586195 31 96.8 35 ..........T.................... TTATCCAGGGCGGCGAGCTTGCCGCTAAGTCCGCG 4586261 31 100.0 36 ............................... ATTAAAGATGGCTCGATAACCAATGCTAAAATTGGC 4586328 31 100.0 37 ............................... CCGCGCGCTTGGTCGATGTTGAGCCCGCAGATGACGG 4586396 31 100.0 34 ............................... GAGTGCACCCAGAACTGGGCGGGCAGCATAGTGC 4586461 31 100.0 35 ............................... TTTCGTGTTGCGTGCTGGCGGACAGCTAGATCGAT 4586527 31 100.0 35 ............................... TGTATCTTGGGCCGATTCGGATTCAATACAAAAAG 4586593 31 100.0 35 ............................... AGCTTTCAGCGGGCATATGGGGCCGGGGCAGCAGC 4586659 31 100.0 34 ............................... TGGCAGCAGCCACGGAGAAATACAAGGATCATCT 4586724 31 100.0 35 ............................... ATGGCCATGCGGGCATGTCATGGTGACACTGCCAG 4586790 31 100.0 35 ............................... AACTGGGGCAGTGCGCCGCAGAAGTCCGCCCTGCG 4586856 31 100.0 35 ............................... TAACATGCTGTACCTGGAATTGCAGCTGACCGAAG 4586922 31 100.0 37 ............................... TACAAGTACGCGCCTGCACGCGCAGCGGCGCCGGCGG 4586990 31 100.0 35 ............................... TGCACAGGCTTACCCACCGCAGCGGTGGATTTATC 4587056 31 100.0 34 ............................... TTAAAACTCTCTAGGGCGCGGGCGTACAATTTTC 4587121 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 61 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCAAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTCGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATCGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCTTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACCTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGATTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CTGCCCAAGGTGCCATGCGGTCTATTGCCCTAGGGAACCTCTGAACAACGCACCACAAATGCGAGACACTATTTGTTCGGAATGAGGAGGCATCCATGCAACTGACGTTCGGTGACGCCGAGGGCCTGGGCAAGCGCAAGCAGACCCGGCGCGAGATATTCCTTGTGGAGATGGAGCGCATCGTGCCGTGGAAGCAACTGCTTGCCCTGATCGCGCCGCACTATCCGGTGTCAGGACGACCGGGTCGTCAGCCGTACGCGCTGGCGACGATGTTGCGGATTCATCTGTTGCAGCAGTGGTATGCGTCGAGCGATCCGGCGATGGAAGAGGCATTGCACGAGATCCCGACCCTGCGGCGTTTTGCCCAGCTCGGTGGCTTGGATAACGTTCCAGACGAGACCACGATTCTCAACTTTCGCCGTTTGCTGGAAACCCACGGCATTGCCGCTCGGATGCTGGAAGCGGTCAACGCCCATTTGTCGCGCAAGGGGCAGAGCCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4588347-4588838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036255.1 Xanthomonas oryzae strain BB151-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 4588347 31 100.0 35 ............................... GTGACATGACCGACGCGTTCGCCGCCGCTCGCCGC 4588413 31 100.0 35 ............................... ACCGGGTATAAATATGCAATTGGATAACCAGCCGC 4588479 31 100.0 34 ............................... TGGGTTCAGCGGCAAGCCCTTTCAATGGACAAGG 4588544 31 100.0 35 ............................... TCTGACCGGACCATAGGACCGAAATGATGCAACTC 4588610 31 100.0 34 ............................... TCCGAGTGGGGCTAGTCATTACTTGCTGCCGTAC 4588675 31 100.0 35 ............................... GGGCTACCTTAACCCCGGTGAGGTGTATGCCACCG 4588741 31 100.0 36 ............................... TCCATCGCGCGAATCAGCGTGCCCTCGGTGAAGCGG 4588808 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGTCACGGTGACGCACGCATTGCTGCACGGCAAGGAAGACAGCGTGTTCGGCGACAGCGGCTACACCGGTGCGGAAAAACGCGACGAGTTGCAGAGCTGCGAGGCTGCATTTTTCATTGCCGCCAAGCGCTCCACGATTCAAGCCATTGGCAACAAGCGCGCGCGTGCTAGGGCAGAACGTTGGGAACACTTCAAGGCCAGCGTGCGCGCGAAGGTGGAGCACCCATTCCGGGTGATCAAGCGGCAGTTCGGCTACACCAAGGTGCGCTATCGCGGCCTGGCCAAGAACACCGCACAGGTGCAGACGTTATTTGCGCTGTCGAATCTGTGGAGGGTGCGCCGGCACTTGCTGCCGGCCAGGGGATAATGCTGCCTGGCGGCAGCCAAAACCGCCAGAACGTTGCAAAAATCGCACCCGACTCAGCATTTTTCCAGTCATTGACATGCAAGAAGCTGGAATTTTAGAGGTTTGATGGGTTGTTCAGACCTTCCTTAGCGC # Right flank : CCGTAAATACGGAGTGCGGGCTCATAATCATCTAGGTCATGTTAACACATCCGAAGCCCATCAACGGTGAGCACAAAGCTGAGGAATCCAAGGAACATGACGTCCAGCTTCTCGAAGCGTGTGAAAATCCGGCGGTAGCCCTTCAGGCGACGGAACAGTCGCTCCACGTCGTTGCGTCGCTTGTACATTTCCCGGTCGTACTCCCAAGGGTCGACCCGATTGGACTTGGGTGGGACCACCGGCACGAAGCCAAGATCGAGCGCCAACTGGCGGGTTTCATTGCCTTCGTAAGCCCGATCCATCAGCAAATGAATCGGGCGCTCCACCGGCCCCAGGTGTTCAAGCAACGTGCGGCCTGCCGGTGTGTCATGTGCGTTGCCGGGCGTCAATCCGAACGTGATGGCTGTTCGAGCATCTGCGGCAACCAGATGAATCTTGGTGTTCCATCCACCGCGGGACTTGCCAATCGCTTGTGGGCCGTTTTTTTTAATGCGCCAGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //